data_1LCZ # _model_server_result.job_id hfbrQmA63CUXyVpH50hD3g _model_server_result.datetime_utc '2024-10-13 10:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1LCZ # _exptl.entry_id 1LCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'E-AMINO BIOTINYL CAPROIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LCZ _cell.length_a 47.483 _cell.length_b 94.925 _cell.length_c 105.447 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 94.925 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 94.925 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H27 N3 O4 S' _chem_comp.formula_weight 357.468 _chem_comp.id BH7 _chem_comp.mon_nstd_flag . _chem_comp.name 'E-AMINO BIOTINYL CAPROIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '6-[5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-PENTANOYLAMINO]-HEXANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BH7 sing 70 n n N1 C5 BH7 sing 71 n n N1 HN1 BH7 sing 72 n n C2 C3 BH7 sing 73 n n C2 C6 BH7 sing 74 n n C2 H21A BH7 sing 75 n n C3 N4 BH7 sing 76 n n C3 C8 BH7 sing 77 n n C3 H31 BH7 sing 78 n n N4 C5 BH7 sing 79 n n N4 HN4 BH7 sing 80 n n C5 O9 BH7 doub 81 n n C6 S7 BH7 sing 82 n n C6 H61 BH7 sing 83 n n C6 H62 BH7 sing 84 n n S7 C8 BH7 sing 85 n n C8 C10 BH7 sing 86 n n C8 H81 BH7 sing 87 n n C10 C11 BH7 sing 88 n n C10 H10 BH7 sing 89 n n C10 H11 BH7 sing 90 n n C11 C12 BH7 sing 91 n n C11 H12 BH7 sing 92 n n C11 H13 BH7 sing 93 n n C12 C13 BH7 sing 94 n n C12 H14 BH7 sing 95 n n C12 H15 BH7 sing 96 n n C13 C14 BH7 sing 97 n n C13 H16 BH7 sing 98 n n C13 H17 BH7 sing 99 n n C14 O15 BH7 doub 100 n n C14 N16 BH7 sing 101 n n N16 C17 BH7 sing 102 n n N16 H18 BH7 sing 103 n n C17 C18 BH7 sing 104 n n C17 H19 BH7 sing 105 n n C17 H20 BH7 sing 106 n n C18 C19 BH7 sing 107 n n C18 H21 BH7 sing 108 n n C18 H22 BH7 sing 109 n n C19 C20 BH7 sing 110 n n C19 H23 BH7 sing 111 n n C19 H24 BH7 sing 112 n n C20 C21 BH7 sing 113 n n C20 H25 BH7 sing 114 n n C20 H26 BH7 sing 115 n n C21 C22 BH7 sing 116 n n C21 H27 BH7 sing 117 n n C21 H28 BH7 sing 118 n n C22 O23 BH7 sing 119 n n C22 O24 BH7 doub 120 n n O23 H29 BH7 sing 121 n n # _atom_sites.entry_id 1LCZ _atom_sites.fract_transf_matrix[1][1] 0.02106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BH7 A 1 401 1 BH7 BH7 . D 2 BH7 B 1 400 2 BH7 BH8 . E 3 HOH A 1 501 501 HOH WAT . E 3 HOH A 2 503 503 HOH WAT . E 3 HOH A 3 504 504 HOH WAT . E 3 HOH A 4 506 506 HOH WAT . E 3 HOH A 5 507 507 HOH WAT . E 3 HOH A 6 508 508 HOH WAT . E 3 HOH A 7 510 510 HOH WAT . E 3 HOH A 8 512 512 HOH WAT . E 3 HOH A 9 513 513 HOH WAT . E 3 HOH A 10 515 515 HOH WAT . E 3 HOH A 11 516 516 HOH WAT . E 3 HOH A 12 519 519 HOH WAT . E 3 HOH A 13 520 520 HOH WAT . E 3 HOH A 14 521 521 HOH WAT . E 3 HOH A 15 524 524 HOH WAT . E 3 HOH A 16 525 525 HOH WAT . E 3 HOH A 17 526 526 HOH WAT . E 3 HOH A 18 527 527 HOH WAT . E 3 HOH A 19 528 528 HOH WAT . E 3 HOH A 20 529 529 HOH WAT . E 3 HOH A 21 533 533 HOH WAT . E 3 HOH A 22 535 535 HOH WAT . E 3 HOH A 23 536 536 HOH WAT . E 3 HOH A 24 537 537 HOH WAT . E 3 HOH A 25 539 539 HOH WAT . E 3 HOH A 26 540 540 HOH WAT . E 3 HOH A 27 541 541 HOH WAT . E 3 HOH A 28 544 544 HOH WAT . E 3 HOH A 29 545 545 HOH WAT . E 3 HOH A 30 548 548 HOH WAT . E 3 HOH A 31 550 550 HOH WAT . E 3 HOH A 32 554 554 HOH WAT . E 3 HOH A 33 555 555 HOH WAT . E 3 HOH A 34 557 557 HOH WAT . E 3 HOH A 35 561 561 HOH WAT . E 3 HOH A 36 562 562 HOH WAT . E 3 HOH A 37 563 563 HOH WAT . E 3 HOH A 38 564 564 HOH WAT . E 3 HOH A 39 565 565 HOH WAT . E 3 HOH A 40 566 566 HOH WAT . E 3 HOH A 41 567 567 HOH WAT . E 3 HOH A 42 575 575 HOH WAT . E 3 HOH A 43 576 576 HOH WAT . E 3 HOH A 44 581 581 HOH WAT . E 3 HOH A 45 582 582 HOH WAT . E 3 HOH A 46 583 583 HOH WAT . E 3 HOH A 47 585 585 HOH WAT . E 3 HOH A 48 586 586 HOH WAT . E 3 HOH A 49 587 587 HOH WAT . E 3 HOH A 50 589 589 HOH WAT . E 3 HOH A 51 590 590 HOH WAT . E 3 HOH A 52 592 592 HOH WAT . E 3 HOH A 53 595 595 HOH WAT . E 3 HOH A 54 596 596 HOH WAT . E 3 HOH A 55 598 598 HOH WAT . F 3 HOH B 1 502 502 HOH WAT . F 3 HOH B 2 505 505 HOH WAT . F 3 HOH B 3 509 509 HOH WAT . F 3 HOH B 4 511 511 HOH WAT . F 3 HOH B 5 514 514 HOH WAT . F 3 HOH B 6 517 517 HOH WAT . F 3 HOH B 7 518 518 HOH WAT . F 3 HOH B 8 522 522 HOH WAT . F 3 HOH B 9 523 523 HOH WAT . F 3 HOH B 10 530 530 HOH WAT . F 3 HOH B 11 531 531 HOH WAT . F 3 HOH B 12 532 532 HOH WAT . F 3 HOH B 13 534 534 HOH WAT . F 3 HOH B 14 538 538 HOH WAT . F 3 HOH B 15 542 542 HOH WAT . F 3 HOH B 16 543 543 HOH WAT . F 3 HOH B 17 546 546 HOH WAT . F 3 HOH B 18 547 547 HOH WAT . F 3 HOH B 19 549 549 HOH WAT . F 3 HOH B 20 551 551 HOH WAT . F 3 HOH B 21 552 552 HOH WAT . F 3 HOH B 22 553 553 HOH WAT . F 3 HOH B 23 556 556 HOH WAT . F 3 HOH B 24 558 558 HOH WAT . F 3 HOH B 25 559 559 HOH WAT . F 3 HOH B 26 560 560 HOH WAT . F 3 HOH B 27 568 568 HOH WAT . F 3 HOH B 28 569 569 HOH WAT . F 3 HOH B 29 570 570 HOH WAT . F 3 HOH B 30 571 571 HOH WAT . F 3 HOH B 31 572 572 HOH WAT . F 3 HOH B 32 573 573 HOH WAT . F 3 HOH B 33 574 574 HOH WAT . F 3 HOH B 34 577 577 HOH WAT . F 3 HOH B 35 578 578 HOH WAT . F 3 HOH B 36 579 579 HOH WAT . F 3 HOH B 37 580 580 HOH WAT . F 3 HOH B 38 584 584 HOH WAT . F 3 HOH B 39 588 588 HOH WAT . F 3 HOH B 40 591 591 HOH WAT . F 3 HOH B 41 593 593 HOH WAT . F 3 HOH B 42 594 594 HOH WAT . F 3 HOH B 43 597 597 HOH WAT . F 3 HOH B 44 599 599 HOH WAT . F 3 HOH B 45 600 600 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BH7 . . . D 2 10.033 16.603 4.913 1 47.25 ? N1 BH7 400 B 1 HETATM 2 C C2 BH7 . . . D 2 10.304 17.579 3.843 1 47.37 ? C2 BH7 400 B 1 HETATM 3 C C3 BH7 . . . D 2 11.896 17.568 3.681 1 48.51 ? C3 BH7 400 B 1 HETATM 4 N N4 BH7 . . . D 2 12.354 16.58 4.716 1 48.42 ? N4 BH7 400 B 1 HETATM 5 C C5 BH7 . . . D 2 11.287 16.018 5.424 1 48.78 ? C5 BH7 400 B 1 HETATM 6 C C6 BH7 . . . D 2 9.925 19.061 4.19 1 47.55 ? C6 BH7 400 B 1 HETATM 7 S S7 BH7 . . . D 2 11.377 19.643 5.176 1 48.81 ? S7 BH7 400 B 1 HETATM 8 C C8 BH7 . . . D 2 12.445 19.002 3.884 1 48.15 ? C8 BH7 400 B 1 HETATM 9 O O9 BH7 . . . D 2 11.417 15.197 6.303 1 47.57 ? O9 BH7 400 B 1 HETATM 10 C C10 BH7 . . . D 2 13.982 19.115 4.059 1 47.88 ? C10 BH7 400 B 1 HETATM 11 C C11 BH7 . . . D 2 14.413 20.552 4.451 1 46.75 ? C11 BH7 400 B 1 HETATM 12 C C12 BH7 . . . D 2 15.886 20.754 4.939 1 45.4 ? C12 BH7 400 B 1 HETATM 13 C C13 BH7 . . . D 2 16.404 22.19 4.573 1 45.7 ? C13 BH7 400 B 1 HETATM 14 C C14 BH7 . . . D 2 16.625 22.489 3.055 1 46.9 ? C14 BH7 400 B 1 HETATM 15 O O15 BH7 . . . D 2 16.842 21.62 2.212 1 48.41 ? O15 BH7 400 B 1 HETATM 16 N N16 BH7 . . . D 2 16.566 23.846 2.703 1 48.32 ? N16 BH7 400 B 1 HETATM 17 C C17 BH7 . . . D 2 16.766 24.377 1.288 1 50.27 ? C17 BH7 400 B 1 HETATM 18 C C18 BH7 . . . D 2 15.455 24.391 0.446 1 51.93 ? C18 BH7 400 B 1 HETATM 19 C C19 BH7 . . . D 2 15.546 25.365 -0.778 1 53.89 ? C19 BH7 400 B 1 HETATM 20 C C20 BH7 . . . D 2 15.443 24.565 -2.125 1 54.82 ? C20 BH7 400 B 1 HETATM 21 C C21 BH7 . . . D 2 16.799 24.016 -2.676 1 57.07 ? C21 BH7 400 B 1 HETATM 22 C C22 BH7 . . . D 2 17.078 22.542 -2.32 1 58.96 ? C22 BH7 400 B 1 HETATM 23 O O23 BH7 . . . D 2 17.99 22.107 -1.557 1 59.1 ? O23 BH7 400 B 1 HETATM 24 O O24 BH7 . . . D 2 16.151 21.702 -2.932 1 59.81 ? O24 BH7 400 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #