data_1LDA # _model_server_result.job_id o5Eyg56YQt_1u3L5buvrLw _model_server_result.datetime_utc '2024-11-18 00:37:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":473}' # _entry.id 1LDA # _exptl.entry_id 1LDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LDA _cell.length_a 96.23 _cell.length_b 96.23 _cell.length_c 184.37 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4 A,B,C,D 2 5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 96.758587 96.758587 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 96.758587 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 96.758587 0 5 'crystal symmetry operation' 13_556 -x+1/2,y+1/2,-z+3/2 -1 0 0 0 1 0 0 0 -1 48.379294 48.379294 276.497696 6 'crystal symmetry operation' 14_466 x-1/2,-y+3/2,-z+3/2 1 0 0 0 -1 0 0 0 -1 -48.379294 145.137881 276.497696 7 'crystal symmetry operation' 15_456 y-1/2,x+1/2,-z+3/2 0 1 0 1 0 0 0 0 -1 -48.379294 48.379294 276.497696 8 'crystal symmetry operation' 16_566 -y+1/2,-x+3/2,-z+3/2 0 -1 0 -1 0 0 0 0 -1 48.379294 145.137881 276.497696 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1LDA _atom_sites.fract_transf_matrix[1][1] 0.010335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 473 473 BOG BOG . C 2 BOG A 1 474 474 BOG BOG . D 3 HOH A 1 475 1 HOH WAT . D 3 HOH A 2 476 2 HOH WAT . D 3 HOH A 3 477 3 HOH WAT . D 3 HOH A 4 478 4 HOH WAT . D 3 HOH A 5 479 6 HOH WAT . D 3 HOH A 6 480 7 HOH WAT . D 3 HOH A 7 481 9 HOH WAT . D 3 HOH A 8 482 10 HOH WAT . D 3 HOH A 9 483 11 HOH WAT . D 3 HOH A 10 484 13 HOH WAT . D 3 HOH A 11 485 14 HOH WAT . D 3 HOH A 12 486 15 HOH WAT . D 3 HOH A 13 487 20 HOH WAT . D 3 HOH A 14 488 21 HOH WAT . D 3 HOH A 15 489 22 HOH WAT . D 3 HOH A 16 490 25 HOH WAT . D 3 HOH A 17 491 26 HOH WAT . D 3 HOH A 18 492 28 HOH WAT . D 3 HOH A 19 493 31 HOH WAT . D 3 HOH A 20 494 35 HOH WAT . D 3 HOH A 21 495 36 HOH WAT . D 3 HOH A 22 496 37 HOH WAT . D 3 HOH A 23 497 40 HOH WAT . D 3 HOH A 24 498 44 HOH WAT . D 3 HOH A 25 499 45 HOH WAT . D 3 HOH A 26 500 47 HOH WAT . D 3 HOH A 27 501 48 HOH WAT . D 3 HOH A 28 502 49 HOH WAT . D 3 HOH A 29 503 50 HOH WAT . D 3 HOH A 30 504 51 HOH WAT . D 3 HOH A 31 505 55 HOH WAT . D 3 HOH A 32 506 56 HOH WAT . D 3 HOH A 33 507 63 HOH WAT . D 3 HOH A 34 508 65 HOH WAT . D 3 HOH A 35 509 67 HOH WAT . D 3 HOH A 36 510 68 HOH WAT . D 3 HOH A 37 511 69 HOH WAT . D 3 HOH A 38 512 73 HOH WAT . D 3 HOH A 39 513 75 HOH WAT . D 3 HOH A 40 514 84 HOH WAT . D 3 HOH A 41 515 85 HOH WAT . D 3 HOH A 42 516 86 HOH WAT . D 3 HOH A 43 517 90 HOH WAT . D 3 HOH A 44 518 522 HOH WAT . D 3 HOH A 45 519 441 HOH WAT . D 3 HOH A 46 520 349 HOH WAT . D 3 HOH A 47 521 191 HOH WAT . D 3 HOH A 48 522 348 HOH WAT . D 3 HOH A 49 523 347 HOH WAT . D 3 HOH A 50 524 367 HOH WAT . D 3 HOH A 51 525 359 HOH WAT . D 3 HOH A 52 526 405 HOH WAT . D 3 HOH A 53 527 423 HOH WAT . D 3 HOH A 54 528 361 HOH WAT . D 3 HOH A 55 529 382 HOH WAT . D 3 HOH A 56 530 354 HOH WAT . D 3 HOH A 57 531 442 HOH WAT . D 3 HOH A 58 532 365 HOH WAT . D 3 HOH A 59 533 351 HOH WAT . D 3 HOH A 60 534 366 HOH WAT . D 3 HOH A 61 535 370 HOH WAT . D 3 HOH A 62 536 381 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 31.483 77.735 144.103 1 62.77 ? C1 BOG 473 A 1 HETATM 2 O O1 BOG . . . B 2 31.792 77.052 145.266 1 63.01 ? O1 BOG 473 A 1 HETATM 3 C C2 BOG . . . B 2 32.176 77.067 142.919 1 63.02 ? C2 BOG 473 A 1 HETATM 4 O O2 BOG . . . B 2 33.582 77.161 143.088 1 61.87 ? O2 BOG 473 A 1 HETATM 5 C C3 BOG . . . B 2 31.762 77.744 141.608 1 65.25 ? C3 BOG 473 A 1 HETATM 6 O O3 BOG . . . B 2 32.285 77.024 140.498 1 65.18 ? O3 BOG 473 A 1 HETATM 7 C C4 BOG . . . B 2 30.236 77.832 141.493 1 65.58 ? C4 BOG 473 A 1 HETATM 8 O O4 BOG . . . B 2 29.879 78.629 140.367 1 68.53 ? O4 BOG 473 A 1 HETATM 9 C C5 BOG . . . B 2 29.636 78.445 142.761 1 65.13 ? C5 BOG 473 A 1 HETATM 10 O O5 BOG . . . B 2 30.061 77.705 143.93 1 64.66 ? O5 BOG 473 A 1 HETATM 11 C C6 BOG . . . B 2 28.116 78.435 142.738 1 64.68 ? C6 BOG 473 A 1 HETATM 12 O O6 BOG . . . B 2 27.617 77.214 142.212 1 63.44 ? O6 BOG 473 A 1 HETATM 13 C C1' BOG . . . B 2 31.894 77.831 146.473 1 62.61 ? C1' BOG 473 A 1 HETATM 14 C C2' BOG . . . B 2 30.819 77.377 147.444 1 63.38 ? C2' BOG 473 A 1 HETATM 15 C C3' BOG . . . B 2 30.902 78.13 148.767 1 64.48 ? C3' BOG 473 A 1 HETATM 16 C C4' BOG . . . B 2 29.73 77.78 149.676 1 64 ? C4' BOG 473 A 1 HETATM 17 C C5' BOG . . . B 2 29.832 78.469 151.028 1 63.84 ? C5' BOG 473 A 1 HETATM 18 C C6' BOG . . . B 2 31.028 77.97 151.832 1 63.38 ? C6' BOG 473 A 1 HETATM 19 C C7' BOG . . . B 2 30.99 78.504 153.266 1 63.35 ? C7' BOG 473 A 1 HETATM 20 C C8' BOG . . . B 2 32.053 77.81 154.098 1 61.76 ? C8' BOG 473 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #