data_1LDA
#
_model_server_result.job_id            1CheUcG5jLyMOljvYdAZNg 
_model_server_result.datetime_utc      '2024-11-18 00:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":474}' 
#
_entry.id    1LDA 
#
_exptl.entry_id    1LDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LDA 
_cell.length_a            96.23 
_cell.length_b            96.23 
_cell.length_c            184.37 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1,2,3,4 
A,B,C,D 2 5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 96.758587 96.758587 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 96.758587 0 0 
4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 96.758587 0 
5 'crystal symmetry operation' 13_556 -x+1/2,y+1/2,-z+3/2 -1 0 0 0 1 0 0 0 -1 48.379294 48.379294 276.497696 
6 'crystal symmetry operation' 14_466 x-1/2,-y+3/2,-z+3/2 1 0 0 0 -1 0 0 0 -1 -48.379294 145.137881 276.497696 
7 'crystal symmetry operation' 15_456 y-1/2,x+1/2,-z+3/2 0 1 0 1 0 0 0 0 -1 -48.379294 48.379294 276.497696 
8 'crystal symmetry operation' 16_566 -y+1/2,-x+3/2,-z+3/2 0 -1 0 -1 0 0 0 0 -1 48.379294 145.137881 276.497696 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1LDA 
_atom_sites.fract_transf_matrix[1][1]    0.010335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 473 473 BOG BOG . 
C 2 BOG A 1 474 474 BOG BOG . 
D 3 HOH A 1 475 1 HOH WAT . 
D 3 HOH A 2 476 2 HOH WAT . 
D 3 HOH A 3 477 3 HOH WAT . 
D 3 HOH A 4 478 4 HOH WAT . 
D 3 HOH A 5 479 6 HOH WAT . 
D 3 HOH A 6 480 7 HOH WAT . 
D 3 HOH A 7 481 9 HOH WAT . 
D 3 HOH A 8 482 10 HOH WAT . 
D 3 HOH A 9 483 11 HOH WAT . 
D 3 HOH A 10 484 13 HOH WAT . 
D 3 HOH A 11 485 14 HOH WAT . 
D 3 HOH A 12 486 15 HOH WAT . 
D 3 HOH A 13 487 20 HOH WAT . 
D 3 HOH A 14 488 21 HOH WAT . 
D 3 HOH A 15 489 22 HOH WAT . 
D 3 HOH A 16 490 25 HOH WAT . 
D 3 HOH A 17 491 26 HOH WAT . 
D 3 HOH A 18 492 28 HOH WAT . 
D 3 HOH A 19 493 31 HOH WAT . 
D 3 HOH A 20 494 35 HOH WAT . 
D 3 HOH A 21 495 36 HOH WAT . 
D 3 HOH A 22 496 37 HOH WAT . 
D 3 HOH A 23 497 40 HOH WAT . 
D 3 HOH A 24 498 44 HOH WAT . 
D 3 HOH A 25 499 45 HOH WAT . 
D 3 HOH A 26 500 47 HOH WAT . 
D 3 HOH A 27 501 48 HOH WAT . 
D 3 HOH A 28 502 49 HOH WAT . 
D 3 HOH A 29 503 50 HOH WAT . 
D 3 HOH A 30 504 51 HOH WAT . 
D 3 HOH A 31 505 55 HOH WAT . 
D 3 HOH A 32 506 56 HOH WAT . 
D 3 HOH A 33 507 63 HOH WAT . 
D 3 HOH A 34 508 65 HOH WAT . 
D 3 HOH A 35 509 67 HOH WAT . 
D 3 HOH A 36 510 68 HOH WAT . 
D 3 HOH A 37 511 69 HOH WAT . 
D 3 HOH A 38 512 73 HOH WAT . 
D 3 HOH A 39 513 75 HOH WAT . 
D 3 HOH A 40 514 84 HOH WAT . 
D 3 HOH A 41 515 85 HOH WAT . 
D 3 HOH A 42 516 86 HOH WAT . 
D 3 HOH A 43 517 90 HOH WAT . 
D 3 HOH A 44 518 522 HOH WAT . 
D 3 HOH A 45 519 441 HOH WAT . 
D 3 HOH A 46 520 349 HOH WAT . 
D 3 HOH A 47 521 191 HOH WAT . 
D 3 HOH A 48 522 348 HOH WAT . 
D 3 HOH A 49 523 347 HOH WAT . 
D 3 HOH A 50 524 367 HOH WAT . 
D 3 HOH A 51 525 359 HOH WAT . 
D 3 HOH A 52 526 405 HOH WAT . 
D 3 HOH A 53 527 423 HOH WAT . 
D 3 HOH A 54 528 361 HOH WAT . 
D 3 HOH A 55 529 382 HOH WAT . 
D 3 HOH A 56 530 354 HOH WAT . 
D 3 HOH A 57 531 442 HOH WAT . 
D 3 HOH A 58 532 365 HOH WAT . 
D 3 HOH A 59 533 351 HOH WAT . 
D 3 HOH A 60 534 366 HOH WAT . 
D 3 HOH A 61 535 370 HOH WAT . 
D 3 HOH A 62 536 381 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . C 2 15.958 69.376 149.071 1 67.96 ? C1 BOG 474 A 1 
HETATM 2 O O1 BOG . . . C 2 16.619 68.976 150.227 1 68.03 ? O1 BOG 474 A 1 
HETATM 3 C C2 BOG . . . C 2 16.629 70.619 148.446 1 68.12 ? C2 BOG 474 A 1 
HETATM 4 O O2 BOG . . . C 2 16.554 71.728 149.331 1 68.29 ? O2 BOG 474 A 1 
HETATM 5 C C3 BOG . . . C 2 15.94 70.988 147.131 1 67.31 ? C3 BOG 474 A 1 
HETATM 6 O O3 BOG . . . C 2 16.667 72.02 146.484 1 66.42 ? O3 BOG 474 A 1 
HETATM 7 C C4 BOG . . . C 2 15.83 69.781 146.198 1 67.69 ? C4 BOG 474 A 1 
HETATM 8 O O4 BOG . . . C 2 15.015 70.124 145.088 1 69.58 ? O4 BOG 474 A 1 
HETATM 9 C C5 BOG . . . C 2 15.218 68.578 146.938 1 67.13 ? C5 BOG 474 A 1 
HETATM 10 O O5 BOG . . . C 2 15.977 68.282 148.138 1 66.77 ? O5 BOG 474 A 1 
HETATM 11 C C6 BOG . . . C 2 15.148 67.305 146.095 1 64.85 ? C6 BOG 474 A 1 
HETATM 12 O O6 BOG . . . C 2 16.313 67.132 145.304 1 60.57 ? O6 BOG 474 A 1 
HETATM 13 C C1' BOG . . . C 2 15.9 68.025 151.047 1 69.73 ? C1' BOG 474 A 1 
HETATM 14 C C2' BOG . . . C 2 16.176 68.275 152.532 1 70.84 ? C2' BOG 474 A 1 
HETATM 15 C C3' BOG . . . C 2 15.347 67.322 153.413 1 70.92 ? C3' BOG 474 A 1 
HETATM 16 C C4' BOG . . . C 2 15.608 67.514 154.915 1 71.96 ? C4' BOG 474 A 1 
HETATM 17 C C5' BOG . . . C 2 17.03 67.117 155.318 1 72.39 ? C5' BOG 474 A 1 
HETATM 18 C C6' BOG . . . C 2 17.282 67.323 156.815 1 72.88 ? C6' BOG 474 A 1 
HETATM 19 C C7' BOG . . . C 2 18.724 66.975 157.189 1 73.29 ? C7' BOG 474 A 1 
HETATM 20 C C8' BOG . . . C 2 18.955 67.255 158.668 1 73.23 ? C8' BOG 474 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#