data_1LDI
#
_model_server_result.job_id            A8J7ZTp4OaSjEMN13UTFUg 
_model_server_result.datetime_utc      '2025-07-01 15:58:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ldi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":473}' 
#
_entry.id    1LDI 
#
_exptl.entry_id    1LDI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LDI 
_cell.length_a            96.053 
_cell.length_b            96.053 
_cell.length_c            184.195 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LDI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 96.758587 96.758587 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 96.758587 0 0 
4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 96.758587 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1LDI 
_atom_sites.fract_transf_matrix[1][1]    0.010335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 473 473 BOG BOG . 
C 2 BOG A 1 474 474 BOG BOG . 
D 3 HOH A 1 475 1 HOH HOH . 
D 3 HOH A 2 476 2 HOH HOH . 
D 3 HOH A 3 477 3 HOH HOH . 
D 3 HOH A 4 478 4 HOH HOH . 
D 3 HOH A 5 479 6 HOH HOH . 
D 3 HOH A 6 480 7 HOH HOH . 
D 3 HOH A 7 481 9 HOH HOH . 
D 3 HOH A 8 482 10 HOH HOH . 
D 3 HOH A 9 483 11 HOH HOH . 
D 3 HOH A 10 484 13 HOH HOH . 
D 3 HOH A 11 485 14 HOH HOH . 
D 3 HOH A 12 486 15 HOH HOH . 
D 3 HOH A 13 487 20 HOH HOH . 
D 3 HOH A 14 488 21 HOH HOH . 
D 3 HOH A 15 489 22 HOH HOH . 
D 3 HOH A 16 490 25 HOH HOH . 
D 3 HOH A 17 491 26 HOH HOH . 
D 3 HOH A 18 492 28 HOH HOH . 
D 3 HOH A 19 493 31 HOH HOH . 
D 3 HOH A 20 494 35 HOH HOH . 
D 3 HOH A 21 495 36 HOH HOH . 
D 3 HOH A 22 496 37 HOH HOH . 
D 3 HOH A 23 497 40 HOH HOH . 
D 3 HOH A 24 498 44 HOH HOH . 
D 3 HOH A 25 499 45 HOH HOH . 
D 3 HOH A 26 500 47 HOH HOH . 
D 3 HOH A 27 501 48 HOH HOH . 
D 3 HOH A 28 502 49 HOH HOH . 
D 3 HOH A 29 503 50 HOH HOH . 
D 3 HOH A 30 504 51 HOH HOH . 
D 3 HOH A 31 505 55 HOH HOH . 
D 3 HOH A 32 506 56 HOH HOH . 
D 3 HOH A 33 507 63 HOH HOH . 
D 3 HOH A 34 508 65 HOH HOH . 
D 3 HOH A 35 509 67 HOH HOH . 
D 3 HOH A 36 510 68 HOH HOH . 
D 3 HOH A 37 511 69 HOH HOH . 
D 3 HOH A 38 512 73 HOH HOH . 
D 3 HOH A 39 513 75 HOH HOH . 
D 3 HOH A 40 514 84 HOH HOH . 
D 3 HOH A 41 515 85 HOH HOH . 
D 3 HOH A 42 516 86 HOH HOH . 
D 3 HOH A 43 517 90 HOH HOH . 
D 3 HOH A 44 518 522 HOH HOH . 
D 3 HOH A 45 519 441 HOH HOH . 
D 3 HOH A 46 520 349 HOH HOH . 
D 3 HOH A 47 521 191 HOH HOH . 
D 3 HOH A 48 522 348 HOH HOH . 
D 3 HOH A 49 523 347 HOH HOH . 
D 3 HOH A 50 524 367 HOH HOH . 
D 3 HOH A 51 525 359 HOH HOH . 
D 3 HOH A 52 526 405 HOH HOH . 
D 3 HOH A 53 527 423 HOH HOH . 
D 3 HOH A 54 528 361 HOH HOH . 
D 3 HOH A 55 529 382 HOH HOH . 
D 3 HOH A 56 530 354 HOH HOH . 
D 3 HOH A 57 531 442 HOH HOH . 
D 3 HOH A 58 532 365 HOH HOH . 
D 3 HOH A 59 533 351 HOH HOH . 
D 3 HOH A 60 534 366 HOH HOH . 
D 3 HOH A 61 535 370 HOH HOH . 
D 3 HOH A 62 536 381 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . B 2 31.418 77.63 143.991 1 68.24 ? C1 BOG 473 A 1 
HETATM 2 O O1 BOG . . . B 2 31.727 76.947 145.153 1 68.48 ? O1 BOG 473 A 1 
HETATM 3 C C2 BOG . . . B 2 32.111 76.962 142.806 1 68.49 ? C2 BOG 473 A 1 
HETATM 4 O O2 BOG . . . B 2 33.517 77.057 142.975 1 67.34 ? O2 BOG 473 A 1 
HETATM 5 C C3 BOG . . . B 2 31.696 77.64 141.496 1 70.72 ? C3 BOG 473 A 1 
HETATM 6 O O3 BOG . . . B 2 32.219 76.92 140.385 1 70.65 ? O3 BOG 473 A 1 
HETATM 7 C C4 BOG . . . B 2 30.17 77.727 141.381 1 71.05 ? C4 BOG 473 A 1 
HETATM 8 O O4 BOG . . . B 2 29.812 78.525 140.256 1 74 ? O4 BOG 473 A 1 
HETATM 9 C C5 BOG . . . B 2 29.57 78.34 142.65 1 70.6 ? C5 BOG 473 A 1 
HETATM 10 O O5 BOG . . . B 2 29.996 77.6 143.818 1 70.13 ? O5 BOG 473 A 1 
HETATM 11 C C6 BOG . . . B 2 28.05 78.329 142.627 1 70.15 ? C6 BOG 473 A 1 
HETATM 12 O O6 BOG . . . B 2 27.551 77.108 142.101 1 68.91 ? O6 BOG 473 A 1 
HETATM 13 C C1' BOG . . . B 2 31.83 77.725 146.361 1 68.08 ? C1' BOG 473 A 1 
HETATM 14 C C2' BOG . . . B 2 30.755 77.271 147.332 1 68.85 ? C2' BOG 473 A 1 
HETATM 15 C C3' BOG . . . B 2 30.839 78.023 148.655 1 69.95 ? C3' BOG 473 A 1 
HETATM 16 C C4' BOG . . . B 2 29.667 77.673 149.564 1 69.47 ? C4' BOG 473 A 1 
HETATM 17 C C5' BOG . . . B 2 29.769 78.361 150.917 1 69.31 ? C5' BOG 473 A 1 
HETATM 18 C C6' BOG . . . B 2 30.966 77.863 151.72 1 68.85 ? C6' BOG 473 A 1 
HETATM 19 C C7' BOG . . . B 2 30.928 78.396 153.154 1 68.82 ? C7' BOG 473 A 1 
HETATM 20 C C8' BOG . . . B 2 31.992 77.702 153.986 1 67.23 ? C8' BOG 473 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#