data_1LDM
#
_model_server_result.job_id            mglVkDD84fAaSdmpMOzAbQ 
_model_server_result.datetime_utc      '2025-04-22 12:21:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ldm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":332}' 
#
_entry.id    1LDM 
#
_exptl.entry_id    1LDM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              89.05 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OXAMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LDM 
_cell.length_a            134.5 
_cell.length_b            134.5 
_cell.length_c            85.9 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LDM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? 4-MERIC 4 'complete point assembly' 1 
? monomeric 1 'point asymmetric unit' 2 
? monomeric 1 'point asymmetric unit, std point frame' 3 
? monomeric 1 'crystal asymmetric unit, crystal frame' 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 (1-4) 
A,B,C,D,E 2 1 
A,B,C,D,E 3 P 
A,B,C,D,E 4 (X0)(1) 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? 1 0 0 0 0 -1 0 1 0 0 0 0 
X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 
4 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H3 N O3' 
_chem_comp.formula_weight    89.05 
_chem_comp.id                OXM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OXAMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 OXM sing 312 n n 
C1 O1 OXM doub 313 n n 
C1 C2 OXM sing 314 n n 
N1 HN1 OXM sing 315 n n 
N1 HN2 OXM sing 316 n n 
C2 O2 OXM doub 317 n n 
C2 O3 OXM sing 318 n n 
O3 HO3 OXM sing 319 n n 
#
_atom_sites.entry_id                     1LDM 
_atom_sites.fract_transf_matrix[1][1]    0.007435 
_atom_sites.fract_transf_matrix[1][2]    0.010515 
_atom_sites.fract_transf_matrix[1][3]    0.010515 
_atom_sites.fract_transf_matrix[2][1]    0.007435 
_atom_sites.fract_transf_matrix[2][2]    0 
_atom_sites.fract_transf_matrix[2][3]    0.010515 
_atom_sites.fract_transf_matrix[3][1]    -0.011641 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 330 1 NAD NAD . 
C 3 OXM A 1 331 2 OXM OXM . 
D 3 OXM A 1 332 3 OXM OXM . 
E 4 HOH A 1 333 331 HOH HOH . 
E 4 HOH A 2 334 332 HOH HOH . 
E 4 HOH A 3 335 333 HOH HOH . 
E 4 HOH A 4 336 334 HOH HOH . 
E 4 HOH A 5 337 335 HOH HOH . 
E 4 HOH A 6 338 336 HOH HOH . 
E 4 HOH A 7 339 337 HOH HOH . 
E 4 HOH A 8 340 338 HOH HOH . 
E 4 HOH A 9 341 339 HOH HOH . 
E 4 HOH A 10 342 340 HOH HOH . 
E 4 HOH A 11 343 341 HOH HOH . 
E 4 HOH A 12 344 342 HOH HOH . 
E 4 HOH A 13 345 343 HOH HOH . 
E 4 HOH A 14 346 344 HOH HOH . 
E 4 HOH A 15 347 345 HOH HOH . 
E 4 HOH A 16 348 346 HOH HOH . 
E 4 HOH A 17 349 347 HOH HOH . 
E 4 HOH A 18 350 348 HOH HOH . 
E 4 HOH A 19 351 349 HOH HOH . 
E 4 HOH A 20 352 350 HOH HOH . 
E 4 HOH A 21 353 351 HOH HOH . 
E 4 HOH A 22 354 352 HOH HOH . 
E 4 HOH A 23 355 353 HOH HOH . 
E 4 HOH A 24 356 354 HOH HOH . 
E 4 HOH A 25 357 355 HOH HOH . 
E 4 HOH A 26 358 356 HOH HOH . 
E 4 HOH A 27 359 357 HOH HOH . 
E 4 HOH A 28 360 358 HOH HOH . 
E 4 HOH A 29 361 359 HOH HOH . 
E 4 HOH A 30 362 360 HOH HOH . 
E 4 HOH A 31 363 361 HOH HOH . 
E 4 HOH A 32 364 362 HOH HOH . 
E 4 HOH A 33 365 363 HOH HOH . 
E 4 HOH A 34 366 364 HOH HOH . 
E 4 HOH A 35 367 365 HOH HOH . 
E 4 HOH A 36 368 366 HOH HOH . 
E 4 HOH A 37 369 367 HOH HOH . 
E 4 HOH A 38 370 368 HOH HOH . 
E 4 HOH A 39 371 369 HOH HOH . 
E 4 HOH A 40 372 370 HOH HOH . 
E 4 HOH A 41 373 371 HOH HOH . 
E 4 HOH A 42 374 372 HOH HOH . 
E 4 HOH A 43 375 373 HOH HOH . 
E 4 HOH A 44 376 374 HOH HOH . 
E 4 HOH A 45 377 375 HOH HOH . 
E 4 HOH A 46 378 376 HOH HOH . 
E 4 HOH A 47 379 377 HOH HOH . 
E 4 HOH A 48 380 378 HOH HOH . 
E 4 HOH A 49 381 379 HOH HOH . 
E 4 HOH A 50 382 380 HOH HOH . 
E 4 HOH A 51 383 381 HOH HOH . 
E 4 HOH A 52 384 382 HOH HOH . 
E 4 HOH A 53 385 383 HOH HOH . 
E 4 HOH A 54 386 384 HOH HOH . 
E 4 HOH A 55 387 385 HOH HOH . 
E 4 HOH A 56 388 386 HOH HOH . 
E 4 HOH A 57 389 387 HOH HOH . 
E 4 HOH A 58 390 388 HOH HOH . 
E 4 HOH A 59 391 389 HOH HOH . 
E 4 HOH A 60 392 390 HOH HOH . 
E 4 HOH A 61 393 391 HOH HOH . 
E 4 HOH A 62 394 392 HOH HOH . 
E 4 HOH A 63 395 393 HOH HOH . 
E 4 HOH A 64 396 394 HOH HOH . 
E 4 HOH A 65 397 395 HOH HOH . 
E 4 HOH A 66 398 396 HOH HOH . 
E 4 HOH A 67 399 397 HOH HOH . 
E 4 HOH A 68 400 398 HOH HOH . 
E 4 HOH A 69 401 399 HOH HOH . 
E 4 HOH A 70 402 400 HOH HOH . 
E 4 HOH A 71 403 401 HOH HOH . 
E 4 HOH A 72 404 402 HOH HOH . 
E 4 HOH A 73 405 403 HOH HOH . 
E 4 HOH A 74 406 404 HOH HOH . 
E 4 HOH A 75 407 405 HOH HOH . 
E 4 HOH A 76 408 406 HOH HOH . 
E 4 HOH A 77 409 407 HOH HOH . 
E 4 HOH A 78 410 408 HOH HOH . 
E 4 HOH A 79 411 409 HOH HOH . 
E 4 HOH A 80 412 410 HOH HOH . 
E 4 HOH A 81 413 411 HOH HOH . 
E 4 HOH A 82 414 412 HOH HOH . 
E 4 HOH A 83 415 413 HOH HOH . 
E 4 HOH A 84 416 414 HOH HOH . 
E 4 HOH A 85 417 415 HOH HOH . 
E 4 HOH A 86 418 416 HOH HOH . 
E 4 HOH A 87 419 417 HOH HOH . 
E 4 HOH A 88 420 418 HOH HOH . 
E 4 HOH A 89 421 419 HOH HOH . 
E 4 HOH A 90 422 420 HOH HOH . 
E 4 HOH A 91 423 421 HOH HOH . 
E 4 HOH A 92 424 422 HOH HOH . 
E 4 HOH A 93 425 423 HOH HOH . 
E 4 HOH A 94 426 424 HOH HOH . 
E 4 HOH A 95 427 425 HOH HOH . 
E 4 HOH A 96 428 426 HOH HOH . 
E 4 HOH A 97 429 427 HOH HOH . 
E 4 HOH A 98 430 428 HOH HOH . 
E 4 HOH A 99 431 429 HOH HOH . 
E 4 HOH A 100 432 430 HOH HOH . 
E 4 HOH A 101 433 431 HOH HOH . 
E 4 HOH A 102 434 432 HOH HOH . 
E 4 HOH A 103 435 433 HOH HOH . 
E 4 HOH A 104 436 434 HOH HOH . 
E 4 HOH A 105 437 435 HOH HOH . 
E 4 HOH A 106 438 436 HOH HOH . 
E 4 HOH A 107 439 437 HOH HOH . 
E 4 HOH A 108 440 438 HOH HOH . 
E 4 HOH A 109 441 439 HOH HOH . 
E 4 HOH A 110 442 440 HOH HOH . 
E 4 HOH A 111 443 441 HOH HOH . 
E 4 HOH A 112 444 442 HOH HOH . 
E 4 HOH A 113 445 443 HOH HOH . 
E 4 HOH A 114 446 444 HOH HOH . 
E 4 HOH A 115 447 445 HOH HOH . 
E 4 HOH A 116 448 446 HOH HOH . 
E 4 HOH A 117 449 447 HOH HOH . 
E 4 HOH A 118 450 449 HOH HOH . 
E 4 HOH A 119 451 450 HOH HOH . 
E 4 HOH A 120 452 451 HOH HOH . 
E 4 HOH A 121 453 452 HOH HOH . 
E 4 HOH A 122 454 453 HOH HOH . 
E 4 HOH A 123 455 454 HOH HOH . 
E 4 HOH A 124 456 455 HOH HOH . 
E 4 HOH A 125 457 456 HOH HOH . 
E 4 HOH A 126 458 457 HOH HOH . 
E 4 HOH A 127 459 458 HOH HOH . 
E 4 HOH A 128 460 459 HOH HOH . 
E 4 HOH A 129 461 460 HOH HOH . 
E 4 HOH A 130 462 461 HOH HOH . 
E 4 HOH A 131 463 462 HOH HOH . 
E 4 HOH A 132 464 463 HOH HOH . 
E 4 HOH A 133 465 464 HOH HOH . 
E 4 HOH A 134 466 465 HOH HOH . 
E 4 HOH A 135 467 466 HOH HOH . 
E 4 HOH A 136 468 467 HOH HOH . 
E 4 HOH A 137 469 468 HOH HOH . 
E 4 HOH A 138 470 469 HOH HOH . 
E 4 HOH A 139 471 470 HOH HOH . 
E 4 HOH A 140 472 471 HOH HOH . 
E 4 HOH A 141 473 472 HOH HOH . 
E 4 HOH A 142 474 473 HOH HOH . 
E 4 HOH A 143 475 474 HOH HOH . 
E 4 HOH A 144 476 475 HOH HOH . 
E 4 HOH A 145 477 476 HOH HOH . 
E 4 HOH A 146 478 477 HOH HOH . 
E 4 HOH A 147 479 478 HOH HOH . 
E 4 HOH A 148 480 479 HOH HOH . 
E 4 HOH A 149 481 480 HOH HOH . 
E 4 HOH A 150 482 481 HOH HOH . 
E 4 HOH A 151 483 482 HOH HOH . 
E 4 HOH A 152 484 483 HOH HOH . 
E 4 HOH A 153 485 484 HOH HOH . 
E 4 HOH A 154 486 485 HOH HOH . 
E 4 HOH A 155 487 486 HOH HOH . 
E 4 HOH A 156 488 487 HOH HOH . 
E 4 HOH A 157 489 488 HOH HOH . 
E 4 HOH A 158 490 489 HOH HOH . 
E 4 HOH A 159 491 490 HOH HOH . 
E 4 HOH A 160 492 491 HOH HOH . 
E 4 HOH A 161 493 492 HOH HOH . 
E 4 HOH A 162 494 493 HOH HOH . 
E 4 HOH A 163 495 494 HOH HOH . 
E 4 HOH A 164 496 495 HOH HOH . 
E 4 HOH A 165 497 496 HOH HOH . 
E 4 HOH A 166 498 497 HOH HOH . 
E 4 HOH A 167 499 498 HOH HOH . 
E 4 HOH A 168 500 499 HOH HOH . 
E 4 HOH A 169 501 501 HOH HOH . 
E 4 HOH A 170 502 502 HOH HOH . 
E 4 HOH A 171 503 503 HOH HOH . 
E 4 HOH A 172 504 504 HOH HOH . 
E 4 HOH A 173 505 505 HOH HOH . 
E 4 HOH A 174 506 506 HOH HOH . 
E 4 HOH A 175 507 507 HOH HOH . 
E 4 HOH A 176 508 508 HOH HOH . 
E 4 HOH A 177 509 509 HOH HOH . 
E 4 HOH A 178 510 510 HOH HOH . 
E 4 HOH A 179 511 511 HOH HOH . 
E 4 HOH A 180 512 512 HOH HOH . 
E 4 HOH A 181 513 513 HOH HOH . 
E 4 HOH A 182 514 514 HOH HOH . 
E 4 HOH A 183 515 515 HOH HOH . 
E 4 HOH A 184 516 516 HOH HOH . 
E 4 HOH A 185 517 517 HOH HOH . 
E 4 HOH A 186 518 518 HOH HOH . 
E 4 HOH A 187 519 519 HOH HOH . 
E 4 HOH A 188 520 520 HOH HOH . 
E 4 HOH A 189 521 521 HOH HOH . 
E 4 HOH A 190 522 522 HOH HOH . 
E 4 HOH A 191 523 523 HOH HOH . 
E 4 HOH A 192 524 524 HOH HOH . 
E 4 HOH A 193 525 525 HOH HOH . 
E 4 HOH A 194 526 526 HOH HOH . 
E 4 HOH A 195 527 527 HOH HOH . 
E 4 HOH A 196 528 528 HOH HOH . 
E 4 HOH A 197 529 529 HOH HOH . 
E 4 HOH A 198 530 530 HOH HOH . 
E 4 HOH A 199 531 531 HOH HOH . 
E 4 HOH A 200 532 532 HOH HOH . 
E 4 HOH A 201 533 533 HOH HOH . 
E 4 HOH A 202 534 534 HOH HOH . 
E 4 HOH A 203 535 535 HOH HOH . 
E 4 HOH A 204 536 536 HOH HOH . 
E 4 HOH A 205 537 537 HOH HOH . 
E 4 HOH A 206 538 538 HOH HOH . 
E 4 HOH A 207 539 539 HOH HOH . 
E 4 HOH A 208 540 540 HOH HOH . 
E 4 HOH A 209 541 541 HOH HOH . 
E 4 HOH A 210 542 542 HOH HOH . 
E 4 HOH A 211 543 543 HOH HOH . 
E 4 HOH A 212 544 544 HOH HOH . 
E 4 HOH A 213 545 545 HOH HOH . 
E 4 HOH A 214 546 546 HOH HOH . 
E 4 HOH A 215 547 547 HOH HOH . 
E 4 HOH A 216 548 548 HOH HOH . 
E 4 HOH A 217 549 549 HOH HOH . 
E 4 HOH A 218 550 550 HOH HOH . 
E 4 HOH A 219 551 551 HOH HOH . 
E 4 HOH A 220 552 552 HOH HOH . 
E 4 HOH A 221 553 553 HOH HOH . 
E 4 HOH A 222 554 554 HOH HOH . 
E 4 HOH A 223 555 555 HOH HOH . 
E 4 HOH A 224 556 556 HOH HOH . 
E 4 HOH A 225 557 557 HOH HOH . 
E 4 HOH A 226 558 558 HOH HOH . 
E 4 HOH A 227 559 559 HOH HOH . 
E 4 HOH A 228 560 560 HOH HOH . 
E 4 HOH A 229 561 561 HOH HOH . 
E 4 HOH A 230 562 562 HOH HOH . 
E 4 HOH A 231 563 563 HOH HOH . 
E 4 HOH A 232 564 564 HOH HOH . 
E 4 HOH A 233 565 565 HOH HOH . 
E 4 HOH A 234 566 566 HOH HOH . 
E 4 HOH A 235 567 567 HOH HOH . 
E 4 HOH A 236 568 568 HOH HOH . 
E 4 HOH A 237 569 569 HOH HOH . 
E 4 HOH A 238 570 570 HOH HOH . 
E 4 HOH A 239 571 571 HOH HOH . 
E 4 HOH A 240 572 572 HOH HOH . 
E 4 HOH A 241 573 573 HOH HOH . 
E 4 HOH A 242 574 574 HOH HOH . 
E 4 HOH A 243 575 575 HOH HOH . 
E 4 HOH A 244 576 576 HOH HOH . 
E 4 HOH A 245 577 577 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OXM . . . D 3 20.735 2.35 4.575 1 37.9 ? C1 OXM 332 A 1 
HETATM 2 N N1 OXM . . . D 3 21.683 1.406 4.549 1 37.99 ? N1 OXM 332 A 1 
HETATM 3 O O1 OXM . . . D 3 20.19 2.706 5.656 1 37.51 ? O1 OXM 332 A 1 
HETATM 4 C C2 OXM . . . D 3 19.897 2.475 3.246 1 37.42 ? C2 OXM 332 A 1 
HETATM 5 O O2 OXM . . . D 3 20.071 1.531 2.438 1 36.92 ? O2 OXM 332 A 1 
HETATM 6 O O3 OXM . . . D 3 18.905 3.271 3.286 1 36.55 ? O3 OXM 332 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#