data_1LDO
#
_model_server_result.job_id            ZyjRGJaSVRauyZBVVf2MIw 
_model_server_result.datetime_utc      '2024-12-01 06:24:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ldo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":151}' 
#
_entry.id    1LDO 
#
_exptl.entry_id    1LDO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LDO 
_cell.length_a            71.103 
_cell.length_b            79.813 
_cell.length_c            43.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 79.813 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
disulf ? disulf2 B SG CYS 4 B CYS 204 1_555 B SG CYS 83 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale2 B ND2 ASN 17 B ASN 217 1_555 E C1 NAG . B NAG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1LDO 
_atom_sites.fract_transf_matrix[1][1]    0.014064 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02318 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 151 401 NAG NAG . 
D 3 SNR A 1 150 150 SNR SNR . 
E 2 NAG B 1 352 402 NAG NAG . 
F 3 SNR B 1 350 350 SNR SNR . 
G 4 HOH A 1 402 402 HOH WAT . 
G 4 HOH A 2 404 404 HOH WAT . 
G 4 HOH A 3 405 405 HOH WAT . 
G 4 HOH A 4 409 409 HOH WAT . 
G 4 HOH A 5 410 410 HOH WAT . 
G 4 HOH A 6 411 411 HOH WAT . 
G 4 HOH A 7 414 414 HOH WAT . 
G 4 HOH A 8 416 416 HOH WAT . 
G 4 HOH A 9 417 417 HOH WAT . 
G 4 HOH A 10 420 420 HOH WAT . 
G 4 HOH A 11 424 424 HOH WAT . 
G 4 HOH A 12 425 425 HOH WAT . 
G 4 HOH A 13 426 426 HOH WAT . 
G 4 HOH A 14 430 430 HOH WAT . 
G 4 HOH A 15 434 434 HOH WAT . 
G 4 HOH A 16 435 435 HOH WAT . 
G 4 HOH A 17 436 436 HOH WAT . 
G 4 HOH A 18 437 437 HOH WAT . 
G 4 HOH A 19 438 438 HOH WAT . 
G 4 HOH A 20 440 440 HOH WAT . 
G 4 HOH A 21 441 441 HOH WAT . 
G 4 HOH A 22 442 442 HOH WAT . 
G 4 HOH A 23 445 445 HOH WAT . 
G 4 HOH A 24 446 446 HOH WAT . 
G 4 HOH A 25 447 447 HOH WAT . 
G 4 HOH A 26 457 457 HOH WAT . 
G 4 HOH A 27 459 459 HOH WAT . 
G 4 HOH A 28 462 462 HOH WAT . 
G 4 HOH A 29 464 464 HOH WAT . 
G 4 HOH A 30 465 465 HOH WAT . 
G 4 HOH A 31 466 466 HOH WAT . 
G 4 HOH A 32 467 467 HOH WAT . 
G 4 HOH A 33 468 468 HOH WAT . 
G 4 HOH A 34 470 470 HOH WAT . 
G 4 HOH A 35 472 472 HOH WAT . 
G 4 HOH A 36 473 473 HOH WAT . 
G 4 HOH A 37 475 475 HOH WAT . 
G 4 HOH A 38 476 476 HOH WAT . 
G 4 HOH A 39 481 481 HOH WAT . 
G 4 HOH A 40 482 482 HOH WAT . 
G 4 HOH A 41 484 484 HOH WAT . 
G 4 HOH A 42 485 485 HOH WAT . 
G 4 HOH A 43 490 490 HOH WAT . 
G 4 HOH A 44 492 492 HOH WAT . 
G 4 HOH A 45 497 497 HOH WAT . 
G 4 HOH A 46 500 500 HOH WAT . 
G 4 HOH A 47 505 505 HOH WAT . 
H 4 HOH B 1 401 401 HOH WAT . 
H 4 HOH B 2 403 403 HOH WAT . 
H 4 HOH B 3 406 406 HOH WAT . 
H 4 HOH B 4 407 407 HOH WAT . 
H 4 HOH B 5 408 408 HOH WAT . 
H 4 HOH B 6 412 412 HOH WAT . 
H 4 HOH B 7 413 413 HOH WAT . 
H 4 HOH B 8 415 415 HOH WAT . 
H 4 HOH B 9 418 418 HOH WAT . 
H 4 HOH B 10 419 419 HOH WAT . 
H 4 HOH B 11 421 421 HOH WAT . 
H 4 HOH B 12 422 422 HOH WAT . 
H 4 HOH B 13 423 423 HOH WAT . 
H 4 HOH B 14 427 427 HOH WAT . 
H 4 HOH B 15 428 428 HOH WAT . 
H 4 HOH B 16 429 429 HOH WAT . 
H 4 HOH B 17 431 431 HOH WAT . 
H 4 HOH B 18 432 432 HOH WAT . 
H 4 HOH B 19 433 433 HOH WAT . 
H 4 HOH B 20 439 439 HOH WAT . 
H 4 HOH B 21 443 443 HOH WAT . 
H 4 HOH B 22 444 444 HOH WAT . 
H 4 HOH B 23 448 448 HOH WAT . 
H 4 HOH B 24 449 449 HOH WAT . 
H 4 HOH B 25 450 450 HOH WAT . 
H 4 HOH B 26 451 451 HOH WAT . 
H 4 HOH B 27 452 452 HOH WAT . 
H 4 HOH B 28 453 453 HOH WAT . 
H 4 HOH B 29 454 454 HOH WAT . 
H 4 HOH B 30 455 455 HOH WAT . 
H 4 HOH B 31 456 456 HOH WAT . 
H 4 HOH B 32 458 458 HOH WAT . 
H 4 HOH B 33 460 460 HOH WAT . 
H 4 HOH B 34 461 461 HOH WAT . 
H 4 HOH B 35 463 463 HOH WAT . 
H 4 HOH B 36 469 469 HOH WAT . 
H 4 HOH B 37 471 471 HOH WAT . 
H 4 HOH B 38 474 474 HOH WAT . 
H 4 HOH B 39 477 477 HOH WAT . 
H 4 HOH B 40 478 478 HOH WAT . 
H 4 HOH B 41 479 479 HOH WAT . 
H 4 HOH B 42 480 480 HOH WAT . 
H 4 HOH B 43 483 483 HOH WAT . 
H 4 HOH B 44 486 486 HOH WAT . 
H 4 HOH B 45 487 487 HOH WAT . 
H 4 HOH B 46 488 488 HOH WAT . 
H 4 HOH B 47 489 489 HOH WAT . 
H 4 HOH B 48 491 491 HOH WAT . 
H 4 HOH B 49 493 493 HOH WAT . 
H 4 HOH B 50 494 494 HOH WAT . 
H 4 HOH B 51 495 495 HOH WAT . 
H 4 HOH B 52 496 496 HOH WAT . 
H 4 HOH B 53 498 498 HOH WAT . 
H 4 HOH B 54 499 499 HOH WAT . 
H 4 HOH B 55 501 501 HOH WAT . 
H 4 HOH B 56 502 502 HOH WAT . 
H 4 HOH B 57 503 503 HOH WAT . 
H 4 HOH B 58 504 504 HOH WAT . 
H 4 HOH B 59 506 506 HOH WAT . 
H 4 HOH B 60 507 507 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 0.975 14.527 24.465 1 35.84 ? C1 NAG 151 A 1 
HETATM 2 C C2 NAG . . . C 2 1.517 14.864 25.859 1 37.5 ? C2 NAG 151 A 1 
HETATM 3 C C3 NAG . . . C 2 2.851 14.21 26.173 1 39.1 ? C3 NAG 151 A 1 
HETATM 4 C C4 NAG . . . C 2 2.922 12.843 25.515 1 39.9 ? C4 NAG 151 A 1 
HETATM 5 C C5 NAG . . . C 2 2.702 12.927 23.988 1 39.86 ? C5 NAG 151 A 1 
HETATM 6 C C6 NAG . . . C 2 1.852 11.787 23.518 1 40.89 ? C6 NAG 151 A 1 
HETATM 7 C C7 NAG . . . C 2 0.616 16.948 26.521 1 37.07 ? C7 NAG 151 A 1 
HETATM 8 C C8 NAG . . . C 2 0.764 18.454 26.694 1 35.69 ? C8 NAG 151 A 1 
HETATM 9 N N2 NAG . . . C 2 1.647 16.29 26.019 1 36.73 ? N2 NAG 151 A 1 
HETATM 10 O O3 NAG . . . C 2 2.955 14.059 27.582 1 39.4 ? O3 NAG 151 A 1 
HETATM 11 O O4 NAG . . . C 2 4.193 12.267 25.775 1 41.58 ? O4 NAG 151 A 1 
HETATM 12 O O5 NAG . . . C 2 2.036 14.156 23.592 1 37.78 ? O5 NAG 151 A 1 
HETATM 13 O O6 NAG . . . C 2 1.961 10.696 24.417 1 43.1 ? O6 NAG 151 A 1 
HETATM 14 O O7 NAG . . . C 2 -0.437 16.376 26.828 1 36.43 ? O7 NAG 151 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#