data_1LDO # _model_server_result.job_id 7bxRCEMh3fJE5hV8Sr2JtA _model_server_result.datetime_utc '2024-10-13 10:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ldo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":350}' # _entry.id 1LDO # _exptl.entry_id 1LDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NORBIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LDO _cell.length_a 71.103 _cell.length_b 79.813 _cell.length_c 43.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 79.813 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? disulf ? disulf2 B SG CYS 4 B CYS 204 1_555 B SG CYS 83 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 B ND2 ASN 17 B ASN 217 1_555 E C1 NAG . B NAG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C9 H14 N2 O3 S' _chem_comp.formula_weight 230.284 _chem_comp.id SNR _chem_comp.mon_nstd_flag . _chem_comp.name NORBIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-BUTYRIC ACID' # _atom_sites.entry_id 1LDO _atom_sites.fract_transf_matrix[1][1] 0.014064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 151 401 NAG NAG . D 3 SNR A 1 150 150 SNR SNR . E 2 NAG B 1 352 402 NAG NAG . F 3 SNR B 1 350 350 SNR SNR . G 4 HOH A 1 402 402 HOH WAT . G 4 HOH A 2 404 404 HOH WAT . G 4 HOH A 3 405 405 HOH WAT . G 4 HOH A 4 409 409 HOH WAT . G 4 HOH A 5 410 410 HOH WAT . G 4 HOH A 6 411 411 HOH WAT . G 4 HOH A 7 414 414 HOH WAT . G 4 HOH A 8 416 416 HOH WAT . G 4 HOH A 9 417 417 HOH WAT . G 4 HOH A 10 420 420 HOH WAT . G 4 HOH A 11 424 424 HOH WAT . G 4 HOH A 12 425 425 HOH WAT . G 4 HOH A 13 426 426 HOH WAT . G 4 HOH A 14 430 430 HOH WAT . G 4 HOH A 15 434 434 HOH WAT . G 4 HOH A 16 435 435 HOH WAT . G 4 HOH A 17 436 436 HOH WAT . G 4 HOH A 18 437 437 HOH WAT . G 4 HOH A 19 438 438 HOH WAT . G 4 HOH A 20 440 440 HOH WAT . G 4 HOH A 21 441 441 HOH WAT . G 4 HOH A 22 442 442 HOH WAT . G 4 HOH A 23 445 445 HOH WAT . G 4 HOH A 24 446 446 HOH WAT . G 4 HOH A 25 447 447 HOH WAT . G 4 HOH A 26 457 457 HOH WAT . G 4 HOH A 27 459 459 HOH WAT . G 4 HOH A 28 462 462 HOH WAT . G 4 HOH A 29 464 464 HOH WAT . G 4 HOH A 30 465 465 HOH WAT . G 4 HOH A 31 466 466 HOH WAT . G 4 HOH A 32 467 467 HOH WAT . G 4 HOH A 33 468 468 HOH WAT . G 4 HOH A 34 470 470 HOH WAT . G 4 HOH A 35 472 472 HOH WAT . G 4 HOH A 36 473 473 HOH WAT . G 4 HOH A 37 475 475 HOH WAT . G 4 HOH A 38 476 476 HOH WAT . G 4 HOH A 39 481 481 HOH WAT . G 4 HOH A 40 482 482 HOH WAT . G 4 HOH A 41 484 484 HOH WAT . G 4 HOH A 42 485 485 HOH WAT . G 4 HOH A 43 490 490 HOH WAT . G 4 HOH A 44 492 492 HOH WAT . G 4 HOH A 45 497 497 HOH WAT . G 4 HOH A 46 500 500 HOH WAT . G 4 HOH A 47 505 505 HOH WAT . H 4 HOH B 1 401 401 HOH WAT . H 4 HOH B 2 403 403 HOH WAT . H 4 HOH B 3 406 406 HOH WAT . H 4 HOH B 4 407 407 HOH WAT . H 4 HOH B 5 408 408 HOH WAT . H 4 HOH B 6 412 412 HOH WAT . H 4 HOH B 7 413 413 HOH WAT . H 4 HOH B 8 415 415 HOH WAT . H 4 HOH B 9 418 418 HOH WAT . H 4 HOH B 10 419 419 HOH WAT . H 4 HOH B 11 421 421 HOH WAT . H 4 HOH B 12 422 422 HOH WAT . H 4 HOH B 13 423 423 HOH WAT . H 4 HOH B 14 427 427 HOH WAT . H 4 HOH B 15 428 428 HOH WAT . H 4 HOH B 16 429 429 HOH WAT . H 4 HOH B 17 431 431 HOH WAT . H 4 HOH B 18 432 432 HOH WAT . H 4 HOH B 19 433 433 HOH WAT . H 4 HOH B 20 439 439 HOH WAT . H 4 HOH B 21 443 443 HOH WAT . H 4 HOH B 22 444 444 HOH WAT . H 4 HOH B 23 448 448 HOH WAT . H 4 HOH B 24 449 449 HOH WAT . H 4 HOH B 25 450 450 HOH WAT . H 4 HOH B 26 451 451 HOH WAT . H 4 HOH B 27 452 452 HOH WAT . H 4 HOH B 28 453 453 HOH WAT . H 4 HOH B 29 454 454 HOH WAT . H 4 HOH B 30 455 455 HOH WAT . H 4 HOH B 31 456 456 HOH WAT . H 4 HOH B 32 458 458 HOH WAT . H 4 HOH B 33 460 460 HOH WAT . H 4 HOH B 34 461 461 HOH WAT . H 4 HOH B 35 463 463 HOH WAT . H 4 HOH B 36 469 469 HOH WAT . H 4 HOH B 37 471 471 HOH WAT . H 4 HOH B 38 474 474 HOH WAT . H 4 HOH B 39 477 477 HOH WAT . H 4 HOH B 40 478 478 HOH WAT . H 4 HOH B 41 479 479 HOH WAT . H 4 HOH B 42 480 480 HOH WAT . H 4 HOH B 43 483 483 HOH WAT . H 4 HOH B 44 486 486 HOH WAT . H 4 HOH B 45 487 487 HOH WAT . H 4 HOH B 46 488 488 HOH WAT . H 4 HOH B 47 489 489 HOH WAT . H 4 HOH B 48 491 491 HOH WAT . H 4 HOH B 49 493 493 HOH WAT . H 4 HOH B 50 494 494 HOH WAT . H 4 HOH B 51 495 495 HOH WAT . H 4 HOH B 52 496 496 HOH WAT . H 4 HOH B 53 498 498 HOH WAT . H 4 HOH B 54 499 499 HOH WAT . H 4 HOH B 55 501 501 HOH WAT . H 4 HOH B 56 502 502 HOH WAT . H 4 HOH B 57 503 503 HOH WAT . H 4 HOH B 58 504 504 HOH WAT . H 4 HOH B 59 506 506 HOH WAT . H 4 HOH B 60 507 507 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SNR . . . F 3 13.202 37.784 5.977 1 22.41 ? C1 SNR 350 B 1 HETATM 2 N N2 SNR . . . F 3 12.123 37.698 6.801 1 21.57 ? N2 SNR 350 B 1 HETATM 3 C C3 SNR . . . F 3 10.915 37.993 6.043 1 21.89 ? C3 SNR 350 B 1 HETATM 4 C C4 SNR . . . F 3 11.394 38.291 4.593 1 20.95 ? C4 SNR 350 B 1 HETATM 5 N N5 SNR . . . F 3 12.857 38.123 4.699 1 20.5 ? N5 SNR 350 B 1 HETATM 6 C C6 SNR . . . F 3 10.851 39.745 4.22 1 21.67 ? C6 SNR 350 B 1 HETATM 7 S S7 SNR . . . F 3 10.78 40.657 5.81 1 20.81 ? S7 SNR 350 B 1 HETATM 8 C C8 SNR . . . F 3 10.125 39.192 6.686 1 21.34 ? C8 SNR 350 B 1 HETATM 9 O O11 SNR . . . F 3 14.346 37.582 6.353 1 20.51 ? O11 SNR 350 B 1 HETATM 10 C C12 SNR . . . F 3 11.584 40.472 3.084 1 22.01 ? C12 SNR 350 B 1 HETATM 11 C C13 SNR . . . F 3 10.791 41.675 2.643 1 24.38 ? C13 SNR 350 B 1 HETATM 12 C C14 SNR . . . F 3 11.196 42.23 1.318 1 28.91 ? C14 SNR 350 B 1 HETATM 13 C C15 SNR . . . F 3 10.38 41.594 0.238 1 29.77 ? C15 SNR 350 B 1 HETATM 14 O O16 SNR . . . F 3 9.515 40.758 0.446 1 29.74 ? O16 SNR 350 B 1 HETATM 15 O O17 SNR . . . F 3 10.589 41.878 -0.62 1 32.34 ? O17 SNR 350 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #