data_1LDO # _model_server_result.job_id lfQb4yYKSokPXpyOIHDA0g _model_server_result.datetime_utc '2024-10-13 10:21:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ldo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":352}' # _entry.id 1LDO # _exptl.entry_id 1LDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LDO _cell.length_a 71.103 _cell.length_b 79.813 _cell.length_c 43.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 79.813 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? disulf ? disulf2 B SG CYS 4 B CYS 204 1_555 B SG CYS 83 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 B ND2 ASN 17 B ASN 217 1_555 E C1 NAG . B NAG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1LDO _atom_sites.fract_transf_matrix[1][1] 0.014064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 151 401 NAG NAG . D 3 SNR A 1 150 150 SNR SNR . E 2 NAG B 1 352 402 NAG NAG . F 3 SNR B 1 350 350 SNR SNR . G 4 HOH A 1 402 402 HOH WAT . G 4 HOH A 2 404 404 HOH WAT . G 4 HOH A 3 405 405 HOH WAT . G 4 HOH A 4 409 409 HOH WAT . G 4 HOH A 5 410 410 HOH WAT . G 4 HOH A 6 411 411 HOH WAT . G 4 HOH A 7 414 414 HOH WAT . G 4 HOH A 8 416 416 HOH WAT . G 4 HOH A 9 417 417 HOH WAT . G 4 HOH A 10 420 420 HOH WAT . G 4 HOH A 11 424 424 HOH WAT . G 4 HOH A 12 425 425 HOH WAT . G 4 HOH A 13 426 426 HOH WAT . G 4 HOH A 14 430 430 HOH WAT . G 4 HOH A 15 434 434 HOH WAT . G 4 HOH A 16 435 435 HOH WAT . G 4 HOH A 17 436 436 HOH WAT . G 4 HOH A 18 437 437 HOH WAT . G 4 HOH A 19 438 438 HOH WAT . G 4 HOH A 20 440 440 HOH WAT . G 4 HOH A 21 441 441 HOH WAT . G 4 HOH A 22 442 442 HOH WAT . G 4 HOH A 23 445 445 HOH WAT . G 4 HOH A 24 446 446 HOH WAT . G 4 HOH A 25 447 447 HOH WAT . G 4 HOH A 26 457 457 HOH WAT . G 4 HOH A 27 459 459 HOH WAT . G 4 HOH A 28 462 462 HOH WAT . G 4 HOH A 29 464 464 HOH WAT . G 4 HOH A 30 465 465 HOH WAT . G 4 HOH A 31 466 466 HOH WAT . G 4 HOH A 32 467 467 HOH WAT . G 4 HOH A 33 468 468 HOH WAT . G 4 HOH A 34 470 470 HOH WAT . G 4 HOH A 35 472 472 HOH WAT . G 4 HOH A 36 473 473 HOH WAT . G 4 HOH A 37 475 475 HOH WAT . G 4 HOH A 38 476 476 HOH WAT . G 4 HOH A 39 481 481 HOH WAT . G 4 HOH A 40 482 482 HOH WAT . G 4 HOH A 41 484 484 HOH WAT . G 4 HOH A 42 485 485 HOH WAT . G 4 HOH A 43 490 490 HOH WAT . G 4 HOH A 44 492 492 HOH WAT . G 4 HOH A 45 497 497 HOH WAT . G 4 HOH A 46 500 500 HOH WAT . G 4 HOH A 47 505 505 HOH WAT . H 4 HOH B 1 401 401 HOH WAT . H 4 HOH B 2 403 403 HOH WAT . H 4 HOH B 3 406 406 HOH WAT . H 4 HOH B 4 407 407 HOH WAT . H 4 HOH B 5 408 408 HOH WAT . H 4 HOH B 6 412 412 HOH WAT . H 4 HOH B 7 413 413 HOH WAT . H 4 HOH B 8 415 415 HOH WAT . H 4 HOH B 9 418 418 HOH WAT . H 4 HOH B 10 419 419 HOH WAT . H 4 HOH B 11 421 421 HOH WAT . H 4 HOH B 12 422 422 HOH WAT . H 4 HOH B 13 423 423 HOH WAT . H 4 HOH B 14 427 427 HOH WAT . H 4 HOH B 15 428 428 HOH WAT . H 4 HOH B 16 429 429 HOH WAT . H 4 HOH B 17 431 431 HOH WAT . H 4 HOH B 18 432 432 HOH WAT . H 4 HOH B 19 433 433 HOH WAT . H 4 HOH B 20 439 439 HOH WAT . H 4 HOH B 21 443 443 HOH WAT . H 4 HOH B 22 444 444 HOH WAT . H 4 HOH B 23 448 448 HOH WAT . H 4 HOH B 24 449 449 HOH WAT . H 4 HOH B 25 450 450 HOH WAT . H 4 HOH B 26 451 451 HOH WAT . H 4 HOH B 27 452 452 HOH WAT . H 4 HOH B 28 453 453 HOH WAT . H 4 HOH B 29 454 454 HOH WAT . H 4 HOH B 30 455 455 HOH WAT . H 4 HOH B 31 456 456 HOH WAT . H 4 HOH B 32 458 458 HOH WAT . H 4 HOH B 33 460 460 HOH WAT . H 4 HOH B 34 461 461 HOH WAT . H 4 HOH B 35 463 463 HOH WAT . H 4 HOH B 36 469 469 HOH WAT . H 4 HOH B 37 471 471 HOH WAT . H 4 HOH B 38 474 474 HOH WAT . H 4 HOH B 39 477 477 HOH WAT . H 4 HOH B 40 478 478 HOH WAT . H 4 HOH B 41 479 479 HOH WAT . H 4 HOH B 42 480 480 HOH WAT . H 4 HOH B 43 483 483 HOH WAT . H 4 HOH B 44 486 486 HOH WAT . H 4 HOH B 45 487 487 HOH WAT . H 4 HOH B 46 488 488 HOH WAT . H 4 HOH B 47 489 489 HOH WAT . H 4 HOH B 48 491 491 HOH WAT . H 4 HOH B 49 493 493 HOH WAT . H 4 HOH B 50 494 494 HOH WAT . H 4 HOH B 51 495 495 HOH WAT . H 4 HOH B 52 496 496 HOH WAT . H 4 HOH B 53 498 498 HOH WAT . H 4 HOH B 54 499 499 HOH WAT . H 4 HOH B 55 501 501 HOH WAT . H 4 HOH B 56 502 502 HOH WAT . H 4 HOH B 57 503 503 HOH WAT . H 4 HOH B 58 504 504 HOH WAT . H 4 HOH B 59 506 506 HOH WAT . H 4 HOH B 60 507 507 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 24.821 34.981 3.886 1 39.07 ? C1 NAG 352 B 1 HETATM 2 C C2 NAG . . . E 2 24.51 34.333 2.524 1 40 ? C2 NAG 352 B 1 HETATM 3 C C3 NAG . . . E 2 25.019 32.897 2.447 1 42.13 ? C3 NAG 352 B 1 HETATM 4 C C4 NAG . . . E 2 26.479 32.844 2.904 1 43.2 ? C4 NAG 352 B 1 HETATM 5 C C5 NAG . . . E 2 26.644 33.429 4.323 1 43.16 ? C5 NAG 352 B 1 HETATM 6 C C6 NAG . . . E 2 27.713 34.496 4.373 1 44.77 ? C6 NAG 352 B 1 HETATM 7 C C7 NAG . . . E 2 22.529 35.406 1.682 1 38.13 ? C7 NAG 352 B 1 HETATM 8 C C8 NAG . . . E 2 21.03 35.375 1.414 1 37.26 ? C8 NAG 352 B 1 HETATM 9 N N2 NAG . . . E 2 23.079 34.348 2.264 1 38.33 ? N2 NAG 352 B 1 HETATM 10 O O3 NAG . . . E 2 24.907 32.433 1.103 1 43.05 ? O3 NAG 352 B 1 HETATM 11 O O4 NAG . . . E 2 26.933 31.502 2.885 1 44.81 ? O4 NAG 352 B 1 HETATM 12 O O5 NAG . . . E 2 25.408 34.028 4.805 1 40.57 ? O5 NAG 352 B 1 HETATM 13 O O6 NAG . . . E 2 28.935 33.951 4.841 1 46.09 ? O6 NAG 352 B 1 HETATM 14 O O7 NAG . . . E 2 23.185 36.405 1.375 1 38.99 ? O7 NAG 352 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #