data_1LDT # _model_server_result.job_id EyRFIvv8AYZeEw5ftRzBcg _model_server_result.datetime_utc '2024-12-23 17:27:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ldt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1007}' # _entry.id 1LDT # _exptl.entry_id 1LDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LDT _cell.length_a 63.4 _cell.length_b 63.4 _cell.length_c 131.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 C CA CA . T CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc2 A O ASN 54 T ASN 72 1_555 C CA CA . T CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A O VAL 57 T VAL 75 1_555 C CA CA . T CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 A OE1 GLU 59 T GLU 77 1_555 C CA CA . T CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc5 A OE2 GLU 62 T GLU 80 1_555 C CA CA . T CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc6 C CA CA . T CA 1007 1_555 D O HOH . T HOH 2053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LDT _atom_sites.fract_transf_matrix[1][1] 0.015773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA T 1 1007 1007 CA CA . D 4 HOH T 1 1000 1000 HOH HOH . D 4 HOH T 2 1003 1003 HOH HOH . D 4 HOH T 3 1005 1005 HOH HOH . D 4 HOH T 4 1008 1008 HOH HOH . D 4 HOH T 5 1010 1010 HOH HOH . D 4 HOH T 6 1011 1011 HOH HOH . D 4 HOH T 7 1014 1014 HOH HOH . D 4 HOH T 8 1015 1015 HOH HOH . D 4 HOH T 9 1019 1019 HOH HOH . D 4 HOH T 10 1020 1020 HOH HOH . D 4 HOH T 11 1023 1023 HOH HOH . D 4 HOH T 12 1025 1025 HOH HOH . D 4 HOH T 13 1030 1030 HOH HOH . D 4 HOH T 14 1038 1038 HOH HOH . D 4 HOH T 15 1044 1044 HOH HOH . D 4 HOH T 16 1055 1055 HOH HOH . D 4 HOH T 17 1062 1062 HOH HOH . D 4 HOH T 18 1064 1064 HOH HOH . D 4 HOH T 19 1065 1065 HOH HOH . D 4 HOH T 20 1071 1071 HOH HOH . D 4 HOH T 21 1073 1073 HOH HOH . D 4 HOH T 22 1077 1077 HOH HOH . D 4 HOH T 23 1079 1079 HOH HOH . D 4 HOH T 24 1081 1081 HOH HOH . D 4 HOH T 25 1085 1085 HOH HOH . D 4 HOH T 26 1086 1086 HOH HOH . D 4 HOH T 27 1087 1087 HOH HOH . D 4 HOH T 28 1096 1096 HOH HOH . D 4 HOH T 29 1105 1105 HOH HOH . D 4 HOH T 30 1107 1107 HOH HOH . D 4 HOH T 31 1112 1112 HOH HOH . D 4 HOH T 32 1113 1113 HOH HOH . D 4 HOH T 33 1114 1114 HOH HOH . D 4 HOH T 34 1116 1116 HOH HOH . D 4 HOH T 35 2001 2001 HOH HOH . D 4 HOH T 36 2002 2002 HOH HOH . D 4 HOH T 37 2004 2004 HOH HOH . D 4 HOH T 38 2005 2005 HOH HOH . D 4 HOH T 39 2006 2006 HOH HOH . D 4 HOH T 40 2007 2007 HOH HOH . D 4 HOH T 41 2009 2009 HOH HOH . D 4 HOH T 42 2010 2010 HOH HOH . D 4 HOH T 43 2013 2013 HOH HOH . D 4 HOH T 44 2015 2015 HOH HOH . D 4 HOH T 45 2016 2016 HOH HOH . D 4 HOH T 46 2018 2018 HOH HOH . D 4 HOH T 47 2019 2019 HOH HOH . D 4 HOH T 48 2020 2020 HOH HOH . D 4 HOH T 49 2021 2021 HOH HOH . D 4 HOH T 50 2022 2022 HOH HOH . D 4 HOH T 51 2023 2023 HOH HOH . D 4 HOH T 52 2024 2024 HOH HOH . D 4 HOH T 53 2025 2025 HOH HOH . D 4 HOH T 54 2026 2026 HOH HOH . D 4 HOH T 55 2027 2027 HOH HOH . D 4 HOH T 56 2030 2030 HOH HOH . D 4 HOH T 57 2031 2031 HOH HOH . D 4 HOH T 58 2032 2032 HOH HOH . D 4 HOH T 59 2033 2033 HOH HOH . D 4 HOH T 60 2034 2034 HOH HOH . D 4 HOH T 61 2035 2035 HOH HOH . D 4 HOH T 62 2036 2036 HOH HOH . D 4 HOH T 63 2037 2037 HOH HOH . D 4 HOH T 64 2038 2038 HOH HOH . D 4 HOH T 65 2039 2039 HOH HOH . D 4 HOH T 66 2040 2040 HOH HOH . D 4 HOH T 67 2041 2041 HOH HOH . D 4 HOH T 68 2042 2042 HOH HOH . D 4 HOH T 69 2043 2043 HOH HOH . D 4 HOH T 70 2044 2044 HOH HOH . D 4 HOH T 71 2045 2045 HOH HOH . D 4 HOH T 72 2046 2046 HOH HOH . D 4 HOH T 73 2047 2047 HOH HOH . D 4 HOH T 74 2049 2049 HOH HOH . D 4 HOH T 75 2051 2051 HOH HOH . D 4 HOH T 76 2052 2052 HOH HOH . D 4 HOH T 77 2053 2053 HOH HOH . D 4 HOH T 78 2054 2054 HOH HOH . D 4 HOH T 79 2055 2055 HOH HOH . D 4 HOH T 80 2056 2056 HOH HOH . D 4 HOH T 81 2057 2057 HOH HOH . D 4 HOH T 82 2058 2058 HOH HOH . D 4 HOH T 83 2061 2061 HOH HOH . D 4 HOH T 84 2063 2063 HOH HOH . D 4 HOH T 85 2064 2064 HOH HOH . D 4 HOH T 86 2065 2065 HOH HOH . D 4 HOH T 87 2066 2066 HOH HOH . D 4 HOH T 88 2067 2067 HOH HOH . D 4 HOH T 89 2068 2068 HOH HOH . D 4 HOH T 90 2069 2069 HOH HOH . D 4 HOH T 91 2070 2070 HOH HOH . D 4 HOH T 92 2072 2072 HOH HOH . D 4 HOH T 93 2075 2075 HOH HOH . D 4 HOH T 94 2078 2078 HOH HOH . D 4 HOH T 95 2084 2084 HOH HOH . D 4 HOH T 96 2085 2085 HOH HOH . D 4 HOH T 97 2086 2086 HOH HOH . D 4 HOH T 98 2088 2088 HOH HOH . D 4 HOH T 99 2090 2090 HOH HOH . D 4 HOH T 100 2091 2091 HOH HOH . D 4 HOH T 101 2092 2092 HOH HOH . D 4 HOH T 102 2093 2093 HOH HOH . D 4 HOH T 103 2096 2096 HOH HOH . D 4 HOH T 104 2143 2143 HOH HOH . D 4 HOH T 105 2144 2144 HOH HOH . D 4 HOH T 106 2145 2145 HOH HOH . D 4 HOH T 107 2154 2154 HOH HOH . D 4 HOH T 108 2205 2205 HOH HOH . D 4 HOH T 109 2207 2207 HOH HOH . D 4 HOH T 110 3000 3000 HOH HOH . D 4 HOH T 111 3001 3001 HOH HOH . D 4 HOH T 112 3002 3002 HOH HOH . D 4 HOH T 113 3003 3003 HOH HOH . D 4 HOH T 114 3004 3004 HOH HOH . D 4 HOH T 115 3005 3005 HOH HOH . D 4 HOH T 116 3006 3006 HOH HOH . D 4 HOH T 117 3007 3007 HOH HOH . D 4 HOH T 118 3008 3008 HOH HOH . D 4 HOH T 119 3009 3009 HOH HOH . D 4 HOH T 120 3011 3011 HOH HOH . D 4 HOH T 121 3013 3013 HOH HOH . D 4 HOH T 122 3014 3014 HOH HOH . D 4 HOH T 123 3015 3015 HOH HOH . D 4 HOH T 124 3016 3016 HOH HOH . D 4 HOH T 125 3017 3017 HOH HOH . D 4 HOH T 126 3018 3018 HOH HOH . D 4 HOH T 127 3019 3019 HOH HOH . D 4 HOH T 128 3021 3021 HOH HOH . D 4 HOH T 129 3024 3024 HOH HOH . D 4 HOH T 130 3025 3025 HOH HOH . D 4 HOH T 131 3029 3029 HOH HOH . D 4 HOH T 132 3031 3031 HOH HOH . D 4 HOH T 133 3038 3038 HOH HOH . D 4 HOH T 134 3039 3039 HOH HOH . D 4 HOH T 135 3040 3040 HOH HOH . D 4 HOH T 136 3041 3041 HOH HOH . D 4 HOH T 137 3042 3042 HOH HOH . D 4 HOH T 138 3047 3047 HOH HOH . D 4 HOH T 139 3049 3049 HOH HOH . D 4 HOH T 140 3051 3051 HOH HOH . D 4 HOH T 141 3058 3058 HOH HOH . D 4 HOH T 142 3059 3059 HOH HOH . E 4 HOH L 1 1084 1084 HOH HOH . E 4 HOH L 2 2028 2028 HOH HOH . E 4 HOH L 3 2062 2062 HOH HOH . E 4 HOH L 4 3010 3010 HOH HOH . E 4 HOH L 5 3035 3035 HOH HOH . E 4 HOH L 6 3036 3036 HOH HOH . E 4 HOH L 7 3057 3057 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 56.466 _atom_site.Cartn_y 48.067 _atom_site.Cartn_z 9.796 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1007 _atom_site.auth_asym_id T _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #