data_1LEC # _model_server_result.job_id FGHrLiTz4vhHg_i-5pte1A _model_server_result.datetime_utc '2024-11-30 23:22:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":250}' # _entry.id 1LEC # _exptl.entry_id 1LEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LEC _cell.length_a 78.9 _cell.length_b 78.9 _cell.length_c 89.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 257 NAG 2 n B FUC 2 B 2 FUC ? 262 FUC 2 n B NAG 3 B 3 NAG ? 256 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A ND2 ASN 18 A ASN 18 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 B O3 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? metalc ? metalc1 A OE2 GLU 129 A GLU 129 1_555 C MN MN . A MN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 A OD2 ASP 131 A ASP 131 1_555 C MN MN . A MN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 A OD2 ASP 131 A ASP 131 1_555 D CA CA . A CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc4 A OD1 ASP 131 A ASP 131 1_555 D CA CA . A CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc5 A O TRP 133 A TRP 133 1_555 D CA CA . A CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 A OD1 ASN 135 A ASN 135 1_555 D CA CA . A CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 A OD1 ASP 140 A ASP 140 1_555 C MN MN . A MN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc8 A OD2 ASP 140 A ASP 140 1_555 D CA CA . A CA 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc9 A NE2 HIS 145 A HIS 145 1_555 C MN MN . A MN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc10 C MN MN . A MN 250 1_555 F O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc11 C MN MN . A MN 250 1_555 F O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc12 D CA CA . A CA 251 1_555 F O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc13 D CA CA . A CA 251 1_555 F O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LEC _atom_sites.fract_transf_matrix[1][1] 0.012674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 250 250 MN MN . D 4 CA A 1 251 251 CA CA . E 5 SO4 A 1 500 500 SO4 SO4 . F 6 HOH A 1 301 301 HOH HOH . F 6 HOH A 2 302 302 HOH HOH . F 6 HOH A 3 303 303 HOH HOH . F 6 HOH A 4 304 304 HOH HOH . F 6 HOH A 5 305 305 HOH HOH . F 6 HOH A 6 306 306 HOH HOH . F 6 HOH A 7 307 307 HOH HOH . F 6 HOH A 8 308 308 HOH HOH . F 6 HOH A 9 309 309 HOH HOH . F 6 HOH A 10 310 310 HOH HOH . F 6 HOH A 11 311 311 HOH HOH . F 6 HOH A 12 312 312 HOH HOH . F 6 HOH A 13 313 313 HOH HOH . F 6 HOH A 14 314 314 HOH HOH . F 6 HOH A 15 315 315 HOH HOH . F 6 HOH A 16 316 316 HOH HOH . F 6 HOH A 17 317 317 HOH HOH . F 6 HOH A 18 318 318 HOH HOH . F 6 HOH A 19 319 319 HOH HOH . F 6 HOH A 20 320 320 HOH HOH . F 6 HOH A 21 321 321 HOH HOH . F 6 HOH A 22 322 322 HOH HOH . F 6 HOH A 23 323 323 HOH HOH . F 6 HOH A 24 324 324 HOH HOH . F 6 HOH A 25 325 325 HOH HOH . F 6 HOH A 26 326 326 HOH HOH . F 6 HOH A 27 327 327 HOH HOH . F 6 HOH A 28 328 328 HOH HOH . F 6 HOH A 29 329 329 HOH HOH . F 6 HOH A 30 330 330 HOH HOH . F 6 HOH A 31 331 331 HOH HOH . F 6 HOH A 32 332 332 HOH HOH . F 6 HOH A 33 333 333 HOH HOH . F 6 HOH A 34 334 334 HOH HOH . F 6 HOH A 35 335 335 HOH HOH . F 6 HOH A 36 336 336 HOH HOH . F 6 HOH A 37 337 337 HOH HOH . F 6 HOH A 38 338 338 HOH HOH . F 6 HOH A 39 339 339 HOH HOH . F 6 HOH A 40 340 340 HOH HOH . F 6 HOH A 41 341 341 HOH HOH . F 6 HOH A 42 342 342 HOH HOH . F 6 HOH A 43 343 343 HOH HOH . F 6 HOH A 44 344 344 HOH HOH . F 6 HOH A 45 345 345 HOH HOH . F 6 HOH A 46 346 346 HOH HOH . F 6 HOH A 47 347 347 HOH HOH . F 6 HOH A 48 348 348 HOH HOH . F 6 HOH A 49 349 349 HOH HOH . F 6 HOH A 50 350 350 HOH HOH . F 6 HOH A 51 351 351 HOH HOH . F 6 HOH A 52 352 352 HOH HOH . F 6 HOH A 53 353 353 HOH HOH . F 6 HOH A 54 354 354 HOH HOH . F 6 HOH A 55 355 355 HOH HOH . F 6 HOH A 56 356 356 HOH HOH . F 6 HOH A 57 357 357 HOH HOH . F 6 HOH A 58 358 358 HOH HOH . F 6 HOH A 59 359 359 HOH HOH . F 6 HOH A 60 360 360 HOH HOH . F 6 HOH A 61 361 361 HOH HOH . F 6 HOH A 62 362 362 HOH HOH . F 6 HOH A 63 363 363 HOH HOH . F 6 HOH A 64 364 364 HOH HOH . F 6 HOH A 65 365 365 HOH HOH . F 6 HOH A 66 366 366 HOH HOH . F 6 HOH A 67 367 367 HOH HOH . F 6 HOH A 68 368 368 HOH HOH . F 6 HOH A 69 369 369 HOH HOH . F 6 HOH A 70 370 370 HOH HOH . F 6 HOH A 71 371 371 HOH HOH . F 6 HOH A 72 372 372 HOH HOH . F 6 HOH A 73 373 373 HOH HOH . F 6 HOH A 74 374 374 HOH HOH . F 6 HOH A 75 375 375 HOH HOH . F 6 HOH A 76 376 376 HOH HOH . F 6 HOH A 77 377 377 HOH HOH . F 6 HOH A 78 378 378 HOH HOH . F 6 HOH A 79 379 379 HOH HOH . F 6 HOH A 80 380 380 HOH HOH . F 6 HOH A 81 381 381 HOH HOH . F 6 HOH A 82 382 382 HOH HOH . F 6 HOH A 83 383 383 HOH HOH . F 6 HOH A 84 384 384 HOH HOH . F 6 HOH A 85 385 385 HOH HOH . F 6 HOH A 86 386 386 HOH HOH . F 6 HOH A 87 387 387 HOH HOH . F 6 HOH A 88 388 388 HOH HOH . F 6 HOH A 89 389 389 HOH HOH . F 6 HOH A 90 390 390 HOH HOH . F 6 HOH A 91 391 391 HOH HOH . F 6 HOH A 92 392 392 HOH HOH . F 6 HOH A 93 393 393 HOH HOH . F 6 HOH A 94 394 394 HOH HOH . F 6 HOH A 95 395 395 HOH HOH . F 6 HOH A 96 396 396 HOH HOH . F 6 HOH A 97 397 397 HOH HOH . F 6 HOH A 98 398 398 HOH HOH . F 6 HOH A 99 399 399 HOH HOH . F 6 HOH A 100 400 400 HOH HOH . F 6 HOH A 101 401 401 HOH HOH . F 6 HOH A 102 402 402 HOH HOH . F 6 HOH A 103 403 403 HOH HOH . F 6 HOH A 104 404 404 HOH HOH . F 6 HOH A 105 405 405 HOH HOH . F 6 HOH A 106 406 406 HOH HOH . F 6 HOH A 107 407 407 HOH HOH . F 6 HOH A 108 408 408 HOH HOH . F 6 HOH A 109 409 409 HOH HOH . F 6 HOH A 110 410 410 HOH HOH . F 6 HOH A 111 411 411 HOH HOH . F 6 HOH A 112 412 412 HOH HOH . F 6 HOH A 113 413 413 HOH HOH . F 6 HOH A 114 414 414 HOH HOH . F 6 HOH A 115 415 415 HOH HOH . F 6 HOH A 116 416 416 HOH HOH . F 6 HOH A 117 417 417 HOH HOH . F 6 HOH A 118 418 418 HOH HOH . F 6 HOH A 119 419 419 HOH HOH . F 6 HOH A 120 420 420 HOH HOH . F 6 HOH A 121 421 421 HOH HOH . F 6 HOH A 122 422 422 HOH HOH . F 6 HOH A 123 423 423 HOH HOH . F 6 HOH A 124 424 424 HOH HOH . F 6 HOH A 125 425 425 HOH HOH . F 6 HOH A 126 426 426 HOH HOH . F 6 HOH A 127 427 427 HOH HOH . F 6 HOH A 128 428 428 HOH HOH . F 6 HOH A 129 429 429 HOH HOH . F 6 HOH A 130 430 430 HOH HOH . F 6 HOH A 131 431 431 HOH HOH . F 6 HOH A 132 432 432 HOH HOH . F 6 HOH A 133 433 433 HOH HOH . F 6 HOH A 134 434 434 HOH HOH . F 6 HOH A 135 435 435 HOH HOH . F 6 HOH A 136 436 436 HOH HOH . F 6 HOH A 137 437 437 HOH HOH . F 6 HOH A 138 438 438 HOH HOH . F 6 HOH A 139 439 439 HOH HOH . F 6 HOH A 140 440 440 HOH HOH . F 6 HOH A 141 441 441 HOH HOH . F 6 HOH A 142 442 442 HOH HOH . F 6 HOH A 143 443 443 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.972 _atom_site.Cartn_y 13.987 _atom_site.Cartn_z 17.676 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 250 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #