data_1LEK # _model_server_result.job_id hd0sXNx_sAWlPZnkUVEuRw _model_server_result.datetime_utc '2024-11-02 05:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 1LEK # _exptl.entry_id 1LEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LEK _cell.length_a 135.894 _cell.length_b 87.123 _cell.length_c 45.231 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG X 951 NAG 4 n D NAG 2 C 2 NAG X 952 NAG 4 n D FUC 3 C 3 FUC X 953 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 86 A ASN 86 1_555 E C1 NAG . A NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.565 ? covale ? covale2 A O GLY 120 A GLY 120 1_555 A N CSO 121 A CSO 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale3 A C GLY 120 A GLY 120 1_555 A N CSO 121 A CSO 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.181 ? covale ? covale4 A C CSO 121 A CSO 121 1_555 A N ASP 122 A ASP 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale5 A ND2 ASN 176 A ASN 176 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? covale ? covale6 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale7 D O6 NAG . C NAG 1 1_555 D C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1LEK _atom_sites.fract_transf_matrix[1][1] 0.007359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 900 900 NAG NAG . F 6 PO4 B 1 990 990 PO4 PO4 . G 7 HOH A 1 954 2 HOH HOH . G 7 HOH A 2 955 3 HOH HOH . G 7 HOH A 3 956 4 HOH HOH . G 7 HOH A 4 957 5 HOH HOH . G 7 HOH A 5 958 6 HOH HOH . G 7 HOH A 6 959 7 HOH HOH . G 7 HOH A 7 960 8 HOH HOH . G 7 HOH A 8 961 9 HOH HOH . G 7 HOH A 9 962 10 HOH HOH . G 7 HOH A 10 963 12 HOH HOH . G 7 HOH A 11 964 13 HOH HOH . G 7 HOH A 12 965 14 HOH HOH . G 7 HOH A 13 966 15 HOH HOH . G 7 HOH A 14 967 19 HOH HOH . G 7 HOH A 15 968 20 HOH HOH . G 7 HOH A 16 969 21 HOH HOH . G 7 HOH A 17 970 22 HOH HOH . G 7 HOH A 18 971 23 HOH HOH . G 7 HOH A 19 972 24 HOH HOH . G 7 HOH A 20 973 25 HOH HOH . G 7 HOH A 21 974 26 HOH HOH . G 7 HOH A 22 975 27 HOH HOH . G 7 HOH A 23 976 29 HOH HOH . G 7 HOH A 24 977 30 HOH HOH . G 7 HOH A 25 978 31 HOH HOH . G 7 HOH A 26 979 33 HOH HOH . G 7 HOH A 27 980 34 HOH HOH . G 7 HOH A 28 981 35 HOH HOH . G 7 HOH A 29 982 37 HOH HOH . G 7 HOH A 30 983 38 HOH HOH . G 7 HOH A 31 984 39 HOH HOH . G 7 HOH A 32 985 41 HOH HOH . G 7 HOH A 33 986 43 HOH HOH . G 7 HOH A 34 987 44 HOH HOH . G 7 HOH A 35 988 46 HOH HOH . G 7 HOH A 36 989 47 HOH HOH . G 7 HOH A 37 990 48 HOH HOH . G 7 HOH A 38 991 49 HOH HOH . G 7 HOH A 39 992 51 HOH HOH . G 7 HOH A 40 993 54 HOH HOH . G 7 HOH A 41 994 55 HOH HOH . G 7 HOH A 42 995 56 HOH HOH . G 7 HOH A 43 996 57 HOH HOH . G 7 HOH A 44 997 58 HOH HOH . G 7 HOH A 45 998 59 HOH HOH . G 7 HOH A 46 999 60 HOH HOH . G 7 HOH A 47 1000 61 HOH HOH . G 7 HOH A 48 1001 62 HOH HOH . G 7 HOH A 49 1002 63 HOH HOH . G 7 HOH A 50 1003 65 HOH HOH . G 7 HOH A 51 1004 67 HOH HOH . G 7 HOH A 52 1005 69 HOH HOH . G 7 HOH A 53 1006 70 HOH HOH . G 7 HOH A 54 1007 71 HOH HOH . G 7 HOH A 55 1008 73 HOH HOH . G 7 HOH A 56 1009 74 HOH HOH . G 7 HOH A 57 1010 75 HOH HOH . G 7 HOH A 58 1011 77 HOH HOH . G 7 HOH A 59 1012 78 HOH HOH . G 7 HOH A 60 1013 79 HOH HOH . G 7 HOH A 61 1014 80 HOH HOH . G 7 HOH A 62 1015 81 HOH HOH . G 7 HOH A 63 1016 82 HOH HOH . G 7 HOH A 64 1017 83 HOH HOH . G 7 HOH A 65 1018 84 HOH HOH . G 7 HOH A 66 1019 85 HOH HOH . G 7 HOH A 67 1020 86 HOH HOH . G 7 HOH A 68 1021 88 HOH HOH . G 7 HOH A 69 1022 89 HOH HOH . G 7 HOH A 70 1023 91 HOH HOH . G 7 HOH A 71 1024 93 HOH HOH . G 7 HOH A 72 1025 94 HOH HOH . G 7 HOH A 73 1026 95 HOH HOH . G 7 HOH A 74 1027 96 HOH HOH . G 7 HOH A 75 1028 97 HOH HOH . G 7 HOH A 76 1029 98 HOH HOH . G 7 HOH A 77 1030 99 HOH HOH . G 7 HOH A 78 1031 100 HOH HOH . G 7 HOH A 79 1032 102 HOH HOH . G 7 HOH A 80 1033 105 HOH HOH . G 7 HOH A 81 1034 106 HOH HOH . G 7 HOH A 82 1035 107 HOH HOH . G 7 HOH A 83 1036 108 HOH HOH . G 7 HOH A 84 1037 110 HOH HOH . G 7 HOH A 85 1038 111 HOH HOH . G 7 HOH A 86 1039 112 HOH HOH . G 7 HOH A 87 1040 113 HOH HOH . G 7 HOH A 88 1041 114 HOH HOH . G 7 HOH A 89 1042 115 HOH HOH . G 7 HOH A 90 1043 116 HOH HOH . G 7 HOH A 91 1044 117 HOH HOH . G 7 HOH A 92 1045 118 HOH HOH . G 7 HOH A 93 1046 119 HOH HOH . G 7 HOH A 94 1047 120 HOH HOH . G 7 HOH A 95 1048 121 HOH HOH . G 7 HOH A 96 1049 123 HOH HOH . G 7 HOH A 97 1050 124 HOH HOH . G 7 HOH A 98 1051 126 HOH HOH . G 7 HOH A 99 1052 127 HOH HOH . G 7 HOH A 100 1053 128 HOH HOH . G 7 HOH A 101 1054 130 HOH HOH . G 7 HOH A 102 1055 132 HOH HOH . G 7 HOH A 103 1056 134 HOH HOH . G 7 HOH A 104 1057 139 HOH HOH . G 7 HOH A 105 1058 140 HOH HOH . G 7 HOH A 106 1059 142 HOH HOH . G 7 HOH A 107 1060 145 HOH HOH . G 7 HOH A 108 1061 146 HOH HOH . G 7 HOH A 109 1062 147 HOH HOH . G 7 HOH A 110 1063 150 HOH HOH . G 7 HOH A 111 1064 152 HOH HOH . G 7 HOH A 112 1065 153 HOH HOH . G 7 HOH A 113 1066 156 HOH HOH . G 7 HOH A 114 1067 159 HOH HOH . G 7 HOH A 115 1068 161 HOH HOH . G 7 HOH A 116 1069 162 HOH HOH . G 7 HOH A 117 1070 164 HOH HOH . G 7 HOH A 118 1071 165 HOH HOH . G 7 HOH A 119 1072 166 HOH HOH . G 7 HOH A 120 1073 168 HOH HOH . G 7 HOH A 121 1074 169 HOH HOH . G 7 HOH A 122 1075 172 HOH HOH . G 7 HOH A 123 1076 173 HOH HOH . G 7 HOH A 124 1077 174 HOH HOH . G 7 HOH A 125 1078 175 HOH HOH . G 7 HOH A 126 1079 177 HOH HOH . G 7 HOH A 127 1080 179 HOH HOH . G 7 HOH A 128 1081 181 HOH HOH . G 7 HOH A 129 1082 182 HOH HOH . G 7 HOH A 130 1083 183 HOH HOH . G 7 HOH A 131 1084 184 HOH HOH . G 7 HOH A 132 1085 185 HOH HOH . G 7 HOH A 133 1086 188 HOH HOH . G 7 HOH A 134 1087 190 HOH HOH . G 7 HOH A 135 1088 192 HOH HOH . G 7 HOH A 136 1089 193 HOH HOH . G 7 HOH A 137 1090 195 HOH HOH . G 7 HOH A 138 1091 196 HOH HOH . G 7 HOH A 139 1092 197 HOH HOH . G 7 HOH A 140 1093 198 HOH HOH . G 7 HOH A 141 1094 199 HOH HOH . G 7 HOH A 142 1095 201 HOH HOH . G 7 HOH A 143 1096 202 HOH HOH . G 7 HOH A 144 1097 203 HOH HOH . G 7 HOH A 145 1098 204 HOH HOH . G 7 HOH A 146 1099 205 HOH HOH . G 7 HOH A 147 1100 206 HOH HOH . G 7 HOH A 148 1101 207 HOH HOH . H 7 HOH B 1 991 1 HOH HOH . H 7 HOH B 2 992 18 HOH HOH . H 7 HOH B 3 993 28 HOH HOH . H 7 HOH B 4 994 32 HOH HOH . H 7 HOH B 5 995 36 HOH HOH . H 7 HOH B 6 996 40 HOH HOH . H 7 HOH B 7 997 42 HOH HOH . H 7 HOH B 8 998 50 HOH HOH . H 7 HOH B 9 999 52 HOH HOH . H 7 HOH B 10 1000 53 HOH HOH . H 7 HOH B 11 1001 64 HOH HOH . H 7 HOH B 12 1002 66 HOH HOH . H 7 HOH B 13 1003 68 HOH HOH . H 7 HOH B 14 1004 72 HOH HOH . H 7 HOH B 15 1005 76 HOH HOH . H 7 HOH B 16 1006 87 HOH HOH . H 7 HOH B 17 1007 92 HOH HOH . H 7 HOH B 18 1008 101 HOH HOH . H 7 HOH B 19 1009 103 HOH HOH . H 7 HOH B 20 1010 104 HOH HOH . H 7 HOH B 21 1011 109 HOH HOH . H 7 HOH B 22 1012 122 HOH HOH . H 7 HOH B 23 1013 125 HOH HOH . H 7 HOH B 24 1014 129 HOH HOH . H 7 HOH B 25 1015 131 HOH HOH . H 7 HOH B 26 1016 133 HOH HOH . H 7 HOH B 27 1017 135 HOH HOH . H 7 HOH B 28 1018 136 HOH HOH . H 7 HOH B 29 1019 138 HOH HOH . H 7 HOH B 30 1020 141 HOH HOH . H 7 HOH B 31 1021 144 HOH HOH . H 7 HOH B 32 1022 148 HOH HOH . H 7 HOH B 33 1023 149 HOH HOH . H 7 HOH B 34 1024 151 HOH HOH . H 7 HOH B 35 1025 154 HOH HOH . H 7 HOH B 36 1026 155 HOH HOH . H 7 HOH B 37 1027 157 HOH HOH . H 7 HOH B 38 1028 158 HOH HOH . H 7 HOH B 39 1029 160 HOH HOH . H 7 HOH B 40 1030 163 HOH HOH . H 7 HOH B 41 1031 167 HOH HOH . H 7 HOH B 42 1032 170 HOH HOH . H 7 HOH B 43 1033 171 HOH HOH . H 7 HOH B 44 1034 176 HOH HOH . H 7 HOH B 45 1035 178 HOH HOH . H 7 HOH B 46 1036 180 HOH HOH . H 7 HOH B 47 1037 186 HOH HOH . H 7 HOH B 48 1038 187 HOH HOH . H 7 HOH B 49 1039 189 HOH HOH . H 7 HOH B 50 1040 191 HOH HOH . H 7 HOH B 51 1041 194 HOH HOH . H 7 HOH B 52 1042 200 HOH HOH . I 7 HOH P 1 11 11 HOH HOH . I 7 HOH P 2 16 16 HOH HOH . I 7 HOH P 3 17 17 HOH HOH . I 7 HOH P 4 45 45 HOH HOH . I 7 HOH P 5 90 90 HOH HOH . I 7 HOH P 6 137 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 25.226 47.554 -26.913 1 71.1 ? C1 NAG 900 A 1 HETATM 2 C C2 NAG . . . E 5 25.312 47.849 -28.426 1 76.98 ? C2 NAG 900 A 1 HETATM 3 C C3 NAG . . . E 5 23.894 47.757 -29.012 1 79.19 ? C3 NAG 900 A 1 HETATM 4 C C4 NAG . . . E 5 23.263 46.385 -28.7 1 81.38 ? C4 NAG 900 A 1 HETATM 5 C C5 NAG . . . E 5 23.366 46.043 -27.187 1 81.59 ? C5 NAG 900 A 1 HETATM 6 C C6 NAG . . . E 5 22.974 44.591 -26.897 1 83.54 ? C6 NAG 900 A 1 HETATM 7 C C7 NAG . . . E 5 27.1 49.268 -29.271 1 78.41 ? C7 NAG 900 A 1 HETATM 8 C C8 NAG . . . E 5 27.616 50.678 -29.532 1 77.33 ? C8 NAG 900 A 1 HETATM 9 N N2 NAG . . . E 5 25.895 49.158 -28.7 1 79.36 ? N2 NAG 900 A 1 HETATM 10 O O3 NAG . . . E 5 23.943 47.95 -30.42 1 81.81 ? O3 NAG 900 A 1 HETATM 11 O O4 NAG . . . E 5 21.896 46.378 -29.113 1 81.97 ? O4 NAG 900 A 1 HETATM 12 O O5 NAG . . . E 5 24.733 46.217 -26.713 1 77.08 ? O5 NAG 900 A 1 HETATM 13 O O6 NAG . . . E 5 22.791 44.355 -25.504 1 85.69 ? O6 NAG 900 A 1 HETATM 14 O O7 NAG . . . E 5 27.804 48.293 -29.573 1 78.13 ? O7 NAG 900 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #