data_1LEL # _model_server_result.job_id PosqAkhmxNCqVjch8eJa2w _model_server_result.datetime_utc '2024-11-29 08:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 1LEL # _exptl.entry_id 1LEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.468 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'E-AMINO BIOTINYL CAPROIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LEL _cell.length_a 70.963 _cell.length_b 80.692 _cell.length_c 43.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 70.963 80.692 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? disulf ? disulf2 B SG CYS 4 B CYS 204 1_555 B SG CYS 83 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B ND2 ASN 17 B ASN 217 1_555 E C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C16 H27 N3 O4 S' _chem_comp.formula_weight 357.468 _chem_comp.id BH7 _chem_comp.mon_nstd_flag . _chem_comp.name 'E-AMINO BIOTINYL CAPROIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '6-[5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-PENTANOYLAMINO]-HEXANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BH7 sing 70 n n N1 C5 BH7 sing 71 n n N1 HN1 BH7 sing 72 n n C2 C3 BH7 sing 73 n n C2 C6 BH7 sing 74 n n C2 H21A BH7 sing 75 n n C3 N4 BH7 sing 76 n n C3 C8 BH7 sing 77 n n C3 H31 BH7 sing 78 n n N4 C5 BH7 sing 79 n n N4 HN4 BH7 sing 80 n n C5 O9 BH7 doub 81 n n C6 S7 BH7 sing 82 n n C6 H61 BH7 sing 83 n n C6 H62 BH7 sing 84 n n S7 C8 BH7 sing 85 n n C8 C10 BH7 sing 86 n n C8 H81 BH7 sing 87 n n C10 C11 BH7 sing 88 n n C10 H10 BH7 sing 89 n n C10 H11 BH7 sing 90 n n C11 C12 BH7 sing 91 n n C11 H12 BH7 sing 92 n n C11 H13 BH7 sing 93 n n C12 C13 BH7 sing 94 n n C12 H14 BH7 sing 95 n n C12 H15 BH7 sing 96 n n C13 C14 BH7 sing 97 n n C13 H16 BH7 sing 98 n n C13 H17 BH7 sing 99 n n C14 O15 BH7 doub 100 n n C14 N16 BH7 sing 101 n n N16 C17 BH7 sing 102 n n N16 H18 BH7 sing 103 n n C17 C18 BH7 sing 104 n n C17 H19 BH7 sing 105 n n C17 H20 BH7 sing 106 n n C18 C19 BH7 sing 107 n n C18 H21 BH7 sing 108 n n C18 H22 BH7 sing 109 n n C19 C20 BH7 sing 110 n n C19 H23 BH7 sing 111 n n C19 H24 BH7 sing 112 n n C20 C21 BH7 sing 113 n n C20 H25 BH7 sing 114 n n C20 H26 BH7 sing 115 n n C21 C22 BH7 sing 116 n n C21 H27 BH7 sing 117 n n C21 H28 BH7 sing 118 n n C22 O23 BH7 sing 119 n n C22 O24 BH7 doub 120 n n O23 H29 BH7 sing 121 n n # _atom_sites.entry_id 1LEL _atom_sites.fract_transf_matrix[1][1] 0.014092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 401 401 NAG NAG . D 3 BH7 A 1 402 1 BH7 BH8 . E 2 NAG B 1 402 402 NAG NAG . F 3 BH7 B 1 2 2 BH7 BH8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BH7 . . . F 3 35.695 28.338 21.266 1 45.46 ? N1 BH7 2 B 1 HETATM 2 C C2 BH7 . . . F 3 35.572 29.559 22.09 1 45.47 ? C2 BH7 2 B 1 HETATM 3 C C3 BH7 . . . F 3 35.378 28.999 23.604 1 46.11 ? C3 BH7 2 B 1 HETATM 4 N N4 BH7 . . . F 3 35.409 27.509 23.462 1 45.6 ? N4 BH7 2 B 1 HETATM 5 C C5 BH7 . . . F 3 35.594 27.107 22.125 1 47.5 ? C5 BH7 2 B 1 HETATM 6 C C6 BH7 . . . F 3 34.296 30.458 21.782 1 43.47 ? C6 BH7 2 B 1 HETATM 7 S S7 BH7 . . . F 3 32.946 29.577 22.703 1 41.22 ? S7 BH7 2 B 1 HETATM 8 C C8 BH7 . . . F 3 34.025 29.533 24.185 1 44.8 ? C8 BH7 2 B 1 HETATM 9 O O9 BH7 . . . F 3 35.656 25.927 21.778 1 47.23 ? O9 BH7 2 B 1 HETATM 10 C C10 BH7 . . . F 3 33.496 28.817 25.463 1 41.8 ? C10 BH7 2 B 1 HETATM 11 C C11 BH7 . . . F 3 32.108 29.353 25.893 1 41.82 ? C11 BH7 2 B 1 HETATM 12 C C12 BH7 . . . F 3 31.72 29.251 27.403 1 41.2 ? C12 BH7 2 B 1 HETATM 13 C C13 BH7 . . . F 3 30.479 30.145 27.756 1 40.86 ? C13 BH7 2 B 1 HETATM 14 C C14 BH7 . . . F 3 30.667 31.363 28.746 1 42.19 ? C14 BH7 2 B 1 HETATM 15 O O15 BH7 . . . F 3 29.732 32.1 29.097 1 39.52 ? O15 BH7 2 B 1 HETATM 16 N N16 BH7 . . . F 3 32.011 31.557 29.219 1 45.01 ? N16 BH7 2 B 1 HETATM 17 C C17 BH7 . . . F 3 32.54 32.659 30.177 1 45.69 ? C17 BH7 2 B 1 HETATM 18 C C18 BH7 . . . F 3 33.52 32.117 31.288 1 43.13 ? C18 BH7 2 B 1 HETATM 19 C C19 BH7 . . . F 3 33.486 32.958 32.631 1 41.39 ? C19 BH7 2 B 1 HETATM 20 C C20 BH7 . . . F 3 33.492 34.497 32.296 1 38.93 ? C20 BH7 2 B 1 HETATM 21 C C21 BH7 . . . F 3 34.896 35.202 32.009 1 38.28 ? C21 BH7 2 B 1 HETATM 22 C C22 BH7 . . . F 3 34.915 36.774 31.903 1 38.28 ? C22 BH7 2 B 1 HETATM 23 O O23 BH7 . . . F 3 35.855 37.555 32.328 1 35.77 ? O23 BH7 2 B 1 HETATM 24 O O24 BH7 . . . F 3 33.745 37.291 31.262 1 38.23 ? O24 BH7 2 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #