data_1LEL # _model_server_result.job_id eAzfsX6-8jWit0pM4xmcVQ _model_server_result.datetime_utc '2024-10-13 10:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 1LEL # _exptl.entry_id 1LEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.468 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'E-AMINO BIOTINYL CAPROIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LEL _cell.length_a 70.963 _cell.length_b 80.692 _cell.length_c 43.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 70.963 80.692 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? disulf ? disulf2 B SG CYS 4 B CYS 204 1_555 B SG CYS 83 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B ND2 ASN 17 B ASN 217 1_555 E C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C16 H27 N3 O4 S' _chem_comp.formula_weight 357.468 _chem_comp.id BH7 _chem_comp.mon_nstd_flag . _chem_comp.name 'E-AMINO BIOTINYL CAPROIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '6-[5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-PENTANOYLAMINO]-HEXANOIC ACID' # _atom_sites.entry_id 1LEL _atom_sites.fract_transf_matrix[1][1] 0.014092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 401 401 NAG NAG . D 3 BH7 A 1 402 1 BH7 BH8 . E 2 NAG B 1 402 402 NAG NAG . F 3 BH7 B 1 2 2 BH7 BH8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BH7 . . . D 3 23.512 42.81 7.38 1 61.33 ? N1 BH7 402 A 1 HETATM 2 C C2 BH7 . . . D 3 24.712 42.606 6.543 1 59.89 ? C2 BH7 402 A 1 HETATM 3 C C3 BH7 . . . D 3 24.129 42.506 5.028 1 59.53 ? C3 BH7 402 A 1 HETATM 4 N N4 BH7 . . . D 3 22.648 42.662 5.184 1 60.97 ? N4 BH7 402 A 1 HETATM 5 C C5 BH7 . . . D 3 22.272 42.842 6.53 1 61.16 ? C5 BH7 402 A 1 HETATM 6 C C6 BH7 . . . D 3 25.499 41.248 6.807 1 57.48 ? C6 BH7 402 A 1 HETATM 7 S S7 BH7 . . . D 3 24.499 40.007 5.854 1 54.24 ? S7 BH7 402 A 1 HETATM 8 C C8 BH7 . . . D 3 24.54 41.13 4.405 1 57.29 ? C8 BH7 402 A 1 HETATM 9 O O9 BH7 . . . D 3 21.104 42.995 6.888 1 58.76 ? O9 BH7 402 A 1 HETATM 10 C C10 BH7 . . . D 3 23.773 40.702 3.118 1 54.35 ? C10 BH7 402 A 1 HETATM 11 C C11 BH7 . . . D 3 24.184 39.286 2.643 1 51.75 ? C11 BH7 402 A 1 HETATM 12 C C12 BH7 . . . D 3 24.039 38.954 1.123 1 51.35 ? C12 BH7 402 A 1 HETATM 13 C C13 BH7 . . . D 3 24.82 37.65 0.727 1 52.02 ? C13 BH7 402 A 1 HETATM 14 C C14 BH7 . . . D 3 26.044 37.762 -0.266 1 50.96 ? C14 BH7 402 A 1 HETATM 15 O O15 BH7 . . . D 3 26.695 36.777 -0.651 1 50.69 ? O15 BH7 402 A 1 HETATM 16 N N16 BH7 . . . D 3 26.352 39.096 -0.702 1 48.79 ? N16 BH7 402 A 1 HETATM 17 C C17 BH7 . . . D 3 27.489 39.556 -1.654 1 44.68 ? C17 BH7 402 A 1 HETATM 18 C C18 BH7 . . . D 3 27.028 40.612 -2.732 1 43.88 ? C18 BH7 402 A 1 HETATM 19 C C19 BH7 . . . D 3 27.856 40.544 -4.083 1 41.56 ? C19 BH7 402 A 1 HETATM 20 C C20 BH7 . . . D 3 29.391 40.407 -3.76 1 41.84 ? C20 BH7 402 A 1 HETATM 21 C C21 BH7 . . . D 3 30.217 41.736 -3.439 1 41.86 ? C21 BH7 402 A 1 HETATM 22 C C22 BH7 . . . D 3 31.786 41.615 -3.345 1 41.96 ? C22 BH7 402 A 1 HETATM 23 O O23 BH7 . . . D 3 32.643 42.496 -3.75 1 42.06 ? O23 BH7 402 A 1 HETATM 24 O O24 BH7 . . . D 3 32.202 40.386 -2.742 1 39.77 ? O24 BH7 402 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #