data_1LEV # _model_server_result.job_id aRPPZIKwDZAZyyh4iceMjw _model_server_result.datetime_utc '2024-11-04 20:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":338}' # _entry.id 1LEV # _exptl.entry_id 1LEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.3 _cell.angle_gamma 90 _cell.entry_id 1LEV _cell.length_a 118.87 _cell.length_b 73.446 _cell.length_c 78.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 97 A GLU 97 1_555 D MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc2 A OE2 GLU 97 A GLU 97 1_555 E MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 D MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 A OD1 ASP 118 A ASP 118 1_555 E MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc5 A OE2 GLU 280 A GLU 280 1_555 D MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc6 B OE1 GLU 97 F GLU 97 1_555 H MN MN . F MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 B OE2 GLU 97 F GLU 97 1_555 I MN MN . F MN 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc8 B OD2 ASP 118 F ASP 118 1_555 H MN MN . F MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc9 B OD1 ASP 118 F ASP 118 1_555 I MN MN . F MN 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc10 B OD1 ASP 121 F ASP 121 1_555 H MN MN . F MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc11 B OE2 GLU 280 F GLU 280 1_555 H MN MN . F MN 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 112 n n O1 HO1 F6P sing 113 n n C1 C2 F6P sing 114 n n C1 H11 F6P sing 115 n n C1 H12 F6P sing 116 n n C2 O2 F6P sing 117 n n C2 C3 F6P sing 118 n n C2 O5 F6P sing 119 n n O2 HO2 F6P sing 120 n n C3 O3 F6P sing 121 n n C3 C4 F6P sing 122 n n C3 H3 F6P sing 123 n n O3 HO3 F6P sing 124 n n C4 O4 F6P sing 125 n n C4 C5 F6P sing 126 n n C4 H4 F6P sing 127 n n O4 HO4 F6P sing 128 n n C5 O5 F6P sing 129 n n C5 C6 F6P sing 130 n n C5 H5 F6P sing 131 n n C6 O6 F6P sing 132 n n C6 H61 F6P sing 133 n n C6 H62 F6P sing 134 n n O6 P F6P sing 135 n n P O1P F6P doub 136 n n P O2P F6P sing 137 n n P O3P F6P sing 138 n n O2P HOP2 F6P sing 139 n n O3P HOP3 F6P sing 140 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1LEV _atom_sites.fract_transf_matrix[1][1] 0.008413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00246 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F6P A 1 338 336 F6P F6P . D 3 MN A 1 340 340 MN MN . E 3 MN A 1 341 341 MN MN . F 4 CLI A 1 342 338 CLI CLI . G 2 F6P F 1 338 337 F6P F6P . H 3 MN F 1 342 342 MN MN . I 3 MN F 1 343 343 MN MN . J 4 CLI F 1 339 339 CLI CLI . K 5 HOH A 1 343 3 HOH HOH . K 5 HOH A 2 344 4 HOH HOH . K 5 HOH A 3 345 7 HOH HOH . K 5 HOH A 4 346 8 HOH HOH . K 5 HOH A 5 347 9 HOH HOH . K 5 HOH A 6 348 10 HOH HOH . K 5 HOH A 7 349 12 HOH HOH . K 5 HOH A 8 350 15 HOH HOH . K 5 HOH A 9 351 19 HOH HOH . K 5 HOH A 10 352 21 HOH HOH . K 5 HOH A 11 353 24 HOH HOH . K 5 HOH A 12 354 25 HOH HOH . K 5 HOH A 13 355 26 HOH HOH . K 5 HOH A 14 356 29 HOH HOH . K 5 HOH A 15 357 30 HOH HOH . K 5 HOH A 16 358 31 HOH HOH . K 5 HOH A 17 359 32 HOH HOH . K 5 HOH A 18 360 33 HOH HOH . K 5 HOH A 19 361 34 HOH HOH . K 5 HOH A 20 362 37 HOH HOH . K 5 HOH A 21 363 38 HOH HOH . K 5 HOH A 22 364 39 HOH HOH . K 5 HOH A 23 365 40 HOH HOH . K 5 HOH A 24 366 41 HOH HOH . K 5 HOH A 25 367 42 HOH HOH . K 5 HOH A 26 368 45 HOH HOH . K 5 HOH A 27 369 46 HOH HOH . K 5 HOH A 28 370 49 HOH HOH . K 5 HOH A 29 371 50 HOH HOH . K 5 HOH A 30 372 54 HOH HOH . K 5 HOH A 31 373 55 HOH HOH . K 5 HOH A 32 374 56 HOH HOH . K 5 HOH A 33 375 59 HOH HOH . K 5 HOH A 34 376 61 HOH HOH . K 5 HOH A 35 377 62 HOH HOH . K 5 HOH A 36 378 64 HOH HOH . K 5 HOH A 37 379 65 HOH HOH . K 5 HOH A 38 380 66 HOH HOH . K 5 HOH A 39 381 67 HOH HOH . K 5 HOH A 40 382 68 HOH HOH . K 5 HOH A 41 383 72 HOH HOH . K 5 HOH A 42 384 73 HOH HOH . K 5 HOH A 43 385 74 HOH HOH . K 5 HOH A 44 386 75 HOH HOH . K 5 HOH A 45 387 77 HOH HOH . K 5 HOH A 46 388 78 HOH HOH . K 5 HOH A 47 389 79 HOH HOH . K 5 HOH A 48 390 80 HOH HOH . K 5 HOH A 49 391 82 HOH HOH . K 5 HOH A 50 392 85 HOH HOH . K 5 HOH A 51 393 86 HOH HOH . K 5 HOH A 52 394 88 HOH HOH . K 5 HOH A 53 395 92 HOH HOH . K 5 HOH A 54 396 93 HOH HOH . K 5 HOH A 55 397 94 HOH HOH . K 5 HOH A 56 398 95 HOH HOH . K 5 HOH A 57 399 96 HOH HOH . K 5 HOH A 58 400 101 HOH HOH . K 5 HOH A 59 401 102 HOH HOH . K 5 HOH A 60 402 103 HOH HOH . K 5 HOH A 61 403 108 HOH HOH . K 5 HOH A 62 404 109 HOH HOH . K 5 HOH A 63 405 110 HOH HOH . L 5 HOH F 1 344 1 HOH HOH . L 5 HOH F 2 345 5 HOH HOH . L 5 HOH F 3 346 6 HOH HOH . L 5 HOH F 4 347 11 HOH HOH . L 5 HOH F 5 348 14 HOH HOH . L 5 HOH F 6 349 16 HOH HOH . L 5 HOH F 7 350 17 HOH HOH . L 5 HOH F 8 351 18 HOH HOH . L 5 HOH F 9 352 20 HOH HOH . L 5 HOH F 10 353 22 HOH HOH . L 5 HOH F 11 354 23 HOH HOH . L 5 HOH F 12 355 27 HOH HOH . L 5 HOH F 13 356 28 HOH HOH . L 5 HOH F 14 357 35 HOH HOH . L 5 HOH F 15 358 36 HOH HOH . L 5 HOH F 16 359 43 HOH HOH . L 5 HOH F 17 360 47 HOH HOH . L 5 HOH F 18 361 48 HOH HOH . L 5 HOH F 19 362 51 HOH HOH . L 5 HOH F 20 363 52 HOH HOH . L 5 HOH F 21 364 53 HOH HOH . L 5 HOH F 22 365 57 HOH HOH . L 5 HOH F 23 366 58 HOH HOH . L 5 HOH F 24 367 60 HOH HOH . L 5 HOH F 25 368 63 HOH HOH . L 5 HOH F 26 369 70 HOH HOH . L 5 HOH F 27 370 71 HOH HOH . L 5 HOH F 28 371 76 HOH HOH . L 5 HOH F 29 372 81 HOH HOH . L 5 HOH F 30 373 83 HOH HOH . L 5 HOH F 31 374 84 HOH HOH . L 5 HOH F 32 375 87 HOH HOH . L 5 HOH F 33 376 89 HOH HOH . L 5 HOH F 34 377 90 HOH HOH . L 5 HOH F 35 378 91 HOH HOH . L 5 HOH F 36 379 97 HOH HOH . L 5 HOH F 37 380 98 HOH HOH . L 5 HOH F 38 381 100 HOH HOH . L 5 HOH F 39 382 104 HOH HOH . L 5 HOH F 40 383 106 HOH HOH . L 5 HOH F 41 384 111 HOH HOH . L 5 HOH F 42 385 113 HOH HOH . L 5 HOH F 43 386 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . C 2 12.829 -9.987 25.763 1 31.99 ? O1 F6P 338 A 1 HETATM 2 C C1 F6P . . . C 2 12.354 -8.75 25.459 1 31.74 ? C1 F6P 338 A 1 HETATM 3 C C2 F6P . . . C 2 13.55 -7.905 25.172 1 30.3 ? C2 F6P 338 A 1 HETATM 4 O O2 F6P . . . C 2 12.915 -6.727 24.638 1 36.26 ? O2 F6P 338 A 1 HETATM 5 C C3 F6P . . . C 2 14.475 -8.478 24.06 1 25.06 ? C3 F6P 338 A 1 HETATM 6 O O3 F6P . . . C 2 13.979 -8.223 22.764 1 21.94 ? O3 F6P 338 A 1 HETATM 7 C C4 F6P . . . C 2 15.728 -7.759 24.307 1 22.55 ? C4 F6P 338 A 1 HETATM 8 O O4 F6P . . . C 2 16.811 -8.41 23.714 1 19.26 ? O4 F6P 338 A 1 HETATM 9 C C5 F6P . . . C 2 15.754 -7.697 25.857 1 23.77 ? C5 F6P 338 A 1 HETATM 10 O O5 F6P . . . C 2 14.391 -7.796 26.307 1 24.17 ? O5 F6P 338 A 1 HETATM 11 C C6 F6P . . . C 2 16.418 -6.449 26.375 1 23.95 ? C6 F6P 338 A 1 HETATM 12 O O6 F6P . . . C 2 16.379 -6.489 27.831 1 22.69 ? O6 F6P 338 A 1 HETATM 13 P P F6P . . . C 2 17.226 -5.428 28.645 1 22.86 ? P F6P 338 A 1 HETATM 14 O O1P F6P . . . C 2 17.518 -6.21 29.935 1 24.08 ? O1P F6P 338 A 1 HETATM 15 O O2P F6P . . . C 2 18.586 -5.102 27.944 1 25.83 ? O2P F6P 338 A 1 HETATM 16 O O3P F6P . . . C 2 16.49 -4.206 28.744 1 21.08 ? O3P F6P 338 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 16 #