data_1LFZ # _model_server_result.job_id 8khJsvY6YBMpGY7hvNli0Q _model_server_result.datetime_utc '2024-11-04 23:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":142}' # _entry.id 1LFZ # _exptl.entry_id 1LFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LFZ _cell.length_a 52.8 _cell.length_b 52.8 _cell.length_c 192.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LFZ _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 52.8 52.8 96.05 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1LFZ _atom_sites.fract_transf_matrix[1][1] 0.018939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 3 HEM B 1 147 147 HEM HEM . E 4 HOH A 1 148 148 HOH HOH . E 4 HOH A 2 150 150 HOH HOH . E 4 HOH A 3 156 156 HOH HOH . E 4 HOH A 4 159 159 HOH HOH . E 4 HOH A 5 160 160 HOH HOH . E 4 HOH A 6 161 161 HOH HOH . E 4 HOH A 7 162 162 HOH HOH . E 4 HOH A 8 163 163 HOH HOH . E 4 HOH A 9 164 164 HOH HOH . E 4 HOH A 10 165 165 HOH HOH . E 4 HOH A 11 173 173 HOH HOH . F 4 HOH B 1 149 149 HOH HOH . F 4 HOH B 2 153 153 HOH HOH . F 4 HOH B 3 157 157 HOH HOH . F 4 HOH B 4 158 158 HOH HOH . F 4 HOH B 5 166 166 HOH HOH . F 4 HOH B 6 167 167 HOH HOH . F 4 HOH B 7 168 168 HOH HOH . F 4 HOH B 8 169 169 HOH HOH . F 4 HOH B 9 170 170 HOH HOH . F 4 HOH B 10 171 171 HOH HOH . F 4 HOH B 11 172 172 HOH HOH . F 4 HOH B 12 174 174 HOH HOH . F 4 HOH B 13 175 175 HOH HOH . F 4 HOH B 14 176 176 HOH HOH . F 4 HOH B 15 177 177 HOH HOH . F 4 HOH B 16 179 179 HOH HOH . F 4 HOH B 17 181 181 HOH HOH . F 4 HOH B 18 183 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 28.564 10.326 65.112 1 19.04 ? CHA HEM 142 A 1 HETATM 2 C CHB HEM . . . C 3 32.934 12.371 64.362 1 19.04 ? CHB HEM 142 A 1 HETATM 3 C CHC HEM . . . C 3 30.718 15.658 61.494 1 19.04 ? CHC HEM 142 A 1 HETATM 4 C CHD HEM . . . C 3 26.371 13.714 62.41 1 19.04 ? CHD HEM 142 A 1 HETATM 5 C C1A HEM . . . C 3 29.94 10.684 65.271 1 19.04 ? C1A HEM 142 A 1 HETATM 6 C C2A HEM . . . C 3 30.9 10.018 66.18 1 19.04 ? C2A HEM 142 A 1 HETATM 7 C C3A HEM . . . C 3 32.101 10.492 65.805 1 19.04 ? C3A HEM 142 A 1 HETATM 8 C C4A HEM . . . C 3 31.922 11.576 64.85 1 19.04 ? C4A HEM 142 A 1 HETATM 9 C CMA HEM . . . C 3 33.402 9.816 66.209 1 19.04 ? CMA HEM 142 A 1 HETATM 10 C CAA HEM . . . C 3 30.66 9.003 67.304 1 19.04 ? CAA HEM 142 A 1 HETATM 11 C CBA HEM . . . C 3 30.615 7.617 66.661 1 19.04 ? CBA HEM 142 A 1 HETATM 12 C CGA HEM . . . C 3 30.377 6.47 67.655 1 19.04 ? CGA HEM 142 A 1 HETATM 13 O O1A HEM . . . C 3 30.27 5.306 67.189 1 19.04 ? O1A HEM 142 A 1 HETATM 14 O O2A HEM . . . C 3 30.301 6.723 68.887 1 19.04 ? O2A HEM 142 A 1 HETATM 15 C C1B HEM . . . C 3 32.713 13.432 63.521 1 19.04 ? C1B HEM 142 A 1 HETATM 16 C C2B HEM . . . C 3 33.77 14.223 62.94 1 19.04 ? C2B HEM 142 A 1 HETATM 17 C C3B HEM . . . C 3 33.181 15.162 62.123 1 19.04 ? C3B HEM 142 A 1 HETATM 18 C C4B HEM . . . C 3 31.718 14.908 62.175 1 19.04 ? C4B HEM 142 A 1 HETATM 19 C CMB HEM . . . C 3 35.251 13.977 63.074 1 19.04 ? CMB HEM 142 A 1 HETATM 20 C CAB HEM . . . C 3 33.833 16.114 61.31 1 19.04 ? CAB HEM 142 A 1 HETATM 21 C CBB HEM . . . C 3 34.118 17.43 61.655 1 19.04 ? CBB HEM 142 A 1 HETATM 22 C C1C HEM . . . C 3 29.313 15.455 61.601 1 19.04 ? C1C HEM 142 A 1 HETATM 23 C C2C HEM . . . C 3 28.267 16.28 60.98 1 19.04 ? C2C HEM 142 A 1 HETATM 24 C C3C HEM . . . C 3 27.019 15.78 61.37 1 19.04 ? C3C HEM 142 A 1 HETATM 25 C C4C HEM . . . C 3 27.324 14.609 62.092 1 19.04 ? C4C HEM 142 A 1 HETATM 26 C CMC HEM . . . C 3 28.595 17.461 60.047 1 19.04 ? CMC HEM 142 A 1 HETATM 27 C CAC HEM . . . C 3 25.738 16.301 61.306 1 19.04 ? CAC HEM 142 A 1 HETATM 28 C CBC HEM . . . C 3 25.302 17.366 60.541 1 19.04 ? CBC HEM 142 A 1 HETATM 29 C C1D HEM . . . C 3 26.647 12.597 63.149 1 19.04 ? C1D HEM 142 A 1 HETATM 30 C C2D HEM . . . C 3 25.602 11.892 63.803 1 19.04 ? C2D HEM 142 A 1 HETATM 31 C C3D HEM . . . C 3 26.168 10.974 64.506 1 19.04 ? C3D HEM 142 A 1 HETATM 32 C C4D HEM . . . C 3 27.608 11.085 64.373 1 19.04 ? C4D HEM 142 A 1 HETATM 33 C CMD HEM . . . C 3 24.125 12.195 63.799 1 19.04 ? CMD HEM 142 A 1 HETATM 34 C CAD HEM . . . C 3 25.398 9.957 65.252 1 19.04 ? CAD HEM 142 A 1 HETATM 35 C CBD HEM . . . C 3 24.773 10.57 66.474 1 19.04 ? CBD HEM 142 A 1 HETATM 36 C CGD HEM . . . C 3 24.388 9.53 67.491 1 19.04 ? CGD HEM 142 A 1 HETATM 37 O O1D HEM . . . C 3 23.534 8.665 67.172 1 19.04 ? O1D HEM 142 A 1 HETATM 38 O O2D HEM . . . C 3 24.953 9.58 68.607 1 19.04 ? O2D HEM 142 A 1 HETATM 39 N NA HEM . . . C 3 30.565 11.721 64.535 1 19.04 ? NA HEM 142 A 1 HETATM 40 N NB HEM . . . C 3 31.44 13.837 63.044 1 19.04 ? NB HEM 142 A 1 HETATM 41 N NC HEM . . . C 3 28.708 14.437 62.33 1 19.04 ? NC HEM 142 A 1 HETATM 42 N ND HEM . . . C 3 27.905 12.18 63.577 1 19.04 ? ND HEM 142 A 1 HETATM 43 FE FE HEM . . . C 3 29.639 13.103 63.413 1 19.6 ? FE HEM 142 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #