data_1LGH # _model_server_result.job_id Xy9lAuWA_s36qtHDZz4S5w _model_server_result.datetime_utc '2024-11-04 22:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HB","auth_seq_id":63}' # _entry.id 1LGH # _exptl.entry_id 1LGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 148.2 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEPTANE-1,2,3-TRIOL _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LGH _cell.length_a 91.6 _cell.length_b 91.6 _cell.length_c 209.97 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexadecameric 16 author_and_software_defined_assembly 1 PQS hexadecameric 16 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,IB,JB,KB,LB 1 1,2,3,4 E,F,G,H,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,MB,NB,OB,PB 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.6 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 45.8 -45.8 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 45.8 45.8 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 HA N N ? 6 IA N N ? 6 NA N N ? 6 OA N N ? 6 SA N N ? 6 TA N N ? 6 UA N N ? 6 ZA N N ? 6 AB N N ? 6 BB N N ? 6 CB N N ? 6 GB N N ? 6 HB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB ALA 51 A ALA 51 3_545 Z O3 HTO . D HTO 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale2 C CB ALA 51 D ALA 51 1_555 S O3 HTO . D HTO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale3 CA O3 HTO . D HTO 100 1_555 E CB ALA 51 G ALA 51 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale4 G CB ALA 51 J ALA 51 1_555 TA O3 HTO . J HTO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? metalc ? metalc1 A OD2 ASP 6 A ASP 6 1_555 J MG BCL . A BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc2 A NE2 HIS 34 A HIS 34 1_555 I MG BCL . A BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 B NE2 HIS 35 B HIS 35 1_555 O MG BCL . B BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 C OD2 ASP 6 D ASP 6 1_555 V MG BCL . D BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 C NE2 HIS 34 D HIS 34 1_555 U MG BCL . D BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 D NE2 HIS 35 E HIS 35 1_555 EA MG BCL . E BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 E OD2 ASP 6 G ASP 6 1_555 KA MG BCL . G BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc8 E NE2 HIS 34 G HIS 34 1_555 JA MG BCL . G BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 F NE2 HIS 35 H HIS 35 1_555 PA MG BCL . H BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc10 G OD2 ASP 6 J ASP 6 1_555 WA MG BCL . J BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc11 G NE2 HIS 34 J HIS 34 1_555 VA MG BCL . J BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc12 H NE2 HIS 35 K HIS 35 1_555 DB MG BCL . K BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C7 H16 O3' _chem_comp.formula_weight 148.2 _chem_comp.id HTO _chem_comp.mon_nstd_flag . _chem_comp.name HEPTANE-1,2,3-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HTO sing 330 n n C1 C2 HTO sing 331 n n C1 H11 HTO sing 332 n n C1 H12 HTO sing 333 n n O1 HO1 HTO sing 334 n n C2 O2 HTO sing 335 n n C2 C3 HTO sing 336 n n C2 H2 HTO sing 337 n n O2 HO2 HTO sing 338 n n C3 O3 HTO sing 339 n n C3 C4 HTO sing 340 n n C3 H3 HTO sing 341 n n O3 HO3 HTO sing 342 n n C4 C5 HTO sing 343 n n C4 H41 HTO sing 344 n n C4 H42 HTO sing 345 n n C5 C6 HTO sing 346 n n C5 H51 HTO sing 347 n n C5 H52 HTO sing 348 n n C6 C7 HTO sing 349 n n C6 H61 HTO sing 350 n n C6 H62 HTO sing 351 n n C7 H71 HTO sing 352 n n C7 H72 HTO sing 353 n n C7 H73 HTO sing 354 n n # _atom_sites.entry_id 1LGH _atom_sites.fract_transf_matrix[1][1] 0.010917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 BCL A 1 57 57 BCL BCL . J 3 BCL A 1 58 58 BCL BCL . K 4 LYC A 1 97 97 LYC LYC . L 5 DET A 1 75 75 DET DET . M 6 HTO A 1 62 62 HTO HTO . N 6 HTO A 1 66 66 HTO HTO . O 3 BCL B 1 59 59 BCL BCL . P 5 DET B 1 77 77 DET DET . Q 5 DET B 1 78 78 DET DET . R 6 HTO B 1 63 63 HTO HTO . S 6 HTO D 1 64 64 HTO HTO . T 6 HTO D 1 65 65 HTO HTO . U 3 BCL D 1 57 57 BCL BCL . V 3 BCL D 1 58 58 BCL BCL . W 4 LYC D 1 97 97 LYC LYC . X 5 DET D 1 75 75 DET DET . Y 6 HTO D 1 62 62 HTO HTO . Z 6 HTO D 1 98 64 HTO HTO . AA 6 HTO D 1 99 65 HTO HTO . BA 6 HTO D 1 66 66 HTO HTO . CA 6 HTO D 1 100 64 HTO HTO . DA 6 HTO E 1 61 61 HTO HTO . EA 3 BCL E 1 59 59 BCL BCL . FA 5 DET E 1 77 77 DET DET . GA 5 DET E 1 78 78 DET DET . HA 6 HTO E 1 79 61 HTO HTO . IA 6 HTO E 1 63 63 HTO HTO . JA 3 BCL G 1 57 57 BCL BCL . KA 3 BCL G 1 58 58 BCL BCL . LA 4 LYC G 1 97 97 LYC LYC . MA 5 DET G 1 75 75 DET DET . NA 6 HTO G 1 62 62 HTO HTO . OA 6 HTO G 1 66 66 HTO HTO . PA 3 BCL H 1 59 59 BCL BCL . QA 5 DET H 1 77 77 DET DET . RA 5 DET H 1 78 78 DET DET . SA 6 HTO H 1 63 63 HTO HTO . TA 6 HTO J 1 64 64 HTO HTO . UA 6 HTO J 1 65 65 HTO HTO . VA 3 BCL J 1 57 57 BCL BCL . WA 3 BCL J 1 58 58 BCL BCL . XA 4 LYC J 1 97 97 LYC LYC . YA 5 DET J 1 75 75 DET DET . ZA 6 HTO J 1 62 62 HTO HTO . AB 6 HTO J 1 98 65 HTO HTO . BB 6 HTO J 1 66 66 HTO HTO . CB 6 HTO K 1 61 61 HTO HTO . DB 3 BCL K 1 59 59 BCL BCL . EB 5 DET K 1 77 77 DET DET . FB 5 DET K 1 78 78 DET DET . GB 6 HTO K 1 79 61 HTO HTO . HB 6 HTO K 1 63 63 HTO HTO . IB 7 HOH A 1 98 6 HOH HOH . IB 7 HOH A 2 99 102 HOH HOH . IB 7 HOH A 3 100 112 HOH HOH . IB 7 HOH A 4 101 122 HOH HOH . JB 7 HOH B 1 79 1 HOH HOH . JB 7 HOH B 2 80 23 HOH HOH . JB 7 HOH B 3 81 36 HOH HOH . JB 7 HOH B 4 82 44 HOH HOH . JB 7 HOH B 5 83 105 HOH HOH . JB 7 HOH B 6 84 118 HOH HOH . JB 7 HOH B 7 85 119 HOH HOH . JB 7 HOH B 8 86 120 HOH HOH . JB 7 HOH B 9 87 121 HOH HOH . KB 7 HOH D 1 101 11 HOH HOH . KB 7 HOH D 2 102 12 HOH HOH . KB 7 HOH D 3 103 104 HOH HOH . KB 7 HOH D 4 104 6 HOH HOH . KB 7 HOH D 5 105 11 HOH HOH . KB 7 HOH D 6 106 102 HOH HOH . KB 7 HOH D 7 107 112 HOH HOH . KB 7 HOH D 8 108 122 HOH HOH . LB 7 HOH E 1 80 1 HOH HOH . LB 7 HOH E 2 81 12 HOH HOH . LB 7 HOH E 3 82 23 HOH HOH . LB 7 HOH E 4 83 36 HOH HOH . LB 7 HOH E 5 84 44 HOH HOH . LB 7 HOH E 6 85 104 HOH HOH . LB 7 HOH E 7 86 105 HOH HOH . LB 7 HOH E 8 87 118 HOH HOH . LB 7 HOH E 9 88 119 HOH HOH . LB 7 HOH E 10 89 120 HOH HOH . LB 7 HOH E 11 90 121 HOH HOH . MB 7 HOH G 1 98 6 HOH HOH . MB 7 HOH G 2 99 102 HOH HOH . MB 7 HOH G 3 100 112 HOH HOH . MB 7 HOH G 4 101 122 HOH HOH . NB 7 HOH H 1 79 1 HOH HOH . NB 7 HOH H 2 80 23 HOH HOH . NB 7 HOH H 3 81 36 HOH HOH . NB 7 HOH H 4 82 44 HOH HOH . NB 7 HOH H 5 83 104 HOH HOH . NB 7 HOH H 6 84 105 HOH HOH . NB 7 HOH H 7 85 118 HOH HOH . NB 7 HOH H 8 86 119 HOH HOH . NB 7 HOH H 9 87 120 HOH HOH . NB 7 HOH H 10 88 121 HOH HOH . OB 7 HOH J 1 99 11 HOH HOH . OB 7 HOH J 2 100 12 HOH HOH . OB 7 HOH J 3 101 6 HOH HOH . OB 7 HOH J 4 102 11 HOH HOH . OB 7 HOH J 5 103 102 HOH HOH . OB 7 HOH J 6 104 112 HOH HOH . OB 7 HOH J 7 105 122 HOH HOH . PB 7 HOH K 1 80 1 HOH HOH . PB 7 HOH K 2 81 12 HOH HOH . PB 7 HOH K 3 82 23 HOH HOH . PB 7 HOH K 4 83 36 HOH HOH . PB 7 HOH K 5 84 44 HOH HOH . PB 7 HOH K 6 85 104 HOH HOH . PB 7 HOH K 7 86 105 HOH HOH . PB 7 HOH K 8 87 118 HOH HOH . PB 7 HOH K 9 88 119 HOH HOH . PB 7 HOH K 10 89 120 HOH HOH . PB 7 HOH K 11 90 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HTO . . . HB 6 75.387 -13.466 7.868 1 142.02 ? C1 HTO 63 K 1 HETATM 2 O O1 HTO . . . HB 6 74.128 -12.758 7.685 1 138.95 ? O1 HTO 63 K 1 HETATM 3 C C2 HTO . . . HB 6 75.508 -14.697 6.961 1 145.72 ? C2 HTO 63 K 1 HETATM 4 O O2 HTO . . . HB 6 76.827 -15.248 7.089 1 147.62 ? O2 HTO 63 K 1 HETATM 5 C C3 HTO . . . HB 6 74.425 -15.777 7.314 1 145.26 ? C3 HTO 63 K 1 HETATM 6 O O3 HTO . . . HB 6 74.661 -16.336 8.616 1 147.16 ? O3 HTO 63 K 1 HETATM 7 C C4 HTO . . . HB 6 74.34 -16.888 6.248 1 143.02 ? C4 HTO 63 K 1 HETATM 8 C C5 HTO . . . HB 6 75.626 -17.684 5.962 1 135.11 ? C5 HTO 63 K 1 HETATM 9 C C6 HTO . . . HB 6 76.063 -17.516 4.488 1 131 ? C6 HTO 63 K 1 HETATM 10 C C7 HTO . . . HB 6 74.999 -18.021 3.498 1 125.31 ? C7 HTO 63 K 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #