data_1LGH # _model_server_result.job_id ubeAlVPVwgvPQrxEdxnYRA _model_server_result.datetime_utc '2024-11-21 13:38:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EB","auth_seq_id":77}' # _entry.id 1LGH # _exptl.entry_id 1LGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.375 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LGH _cell.length_a 91.6 _cell.length_b 91.6 _cell.length_c 209.97 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexadecameric 16 author_and_software_defined_assembly 1 PQS hexadecameric 16 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,IB,JB,KB,LB 1 1,2,3,4 E,F,G,H,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,MB,NB,OB,PB 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.6 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 45.8 -45.8 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 45.8 45.8 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 P N N ? 5 Q N N ? 5 X N N ? 5 FA N N ? 5 GA N N ? 5 MA N N ? 5 QA N N ? 5 RA N N ? 5 YA N N ? 5 EB N N ? 5 FB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB ALA 51 A ALA 51 3_545 Z O3 HTO . D HTO 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale2 C CB ALA 51 D ALA 51 1_555 S O3 HTO . D HTO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale3 CA O3 HTO . D HTO 100 1_555 E CB ALA 51 G ALA 51 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale4 G CB ALA 51 J ALA 51 1_555 TA O3 HTO . J HTO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? metalc ? metalc1 A OD2 ASP 6 A ASP 6 1_555 J MG BCL . A BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc2 A NE2 HIS 34 A HIS 34 1_555 I MG BCL . A BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 B NE2 HIS 35 B HIS 35 1_555 O MG BCL . B BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 C OD2 ASP 6 D ASP 6 1_555 V MG BCL . D BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 C NE2 HIS 34 D HIS 34 1_555 U MG BCL . D BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 D NE2 HIS 35 E HIS 35 1_555 EA MG BCL . E BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 E OD2 ASP 6 G ASP 6 1_555 KA MG BCL . G BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc8 E NE2 HIS 34 G HIS 34 1_555 JA MG BCL . G BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 F NE2 HIS 35 H HIS 35 1_555 PA MG BCL . H BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc10 G OD2 ASP 6 J ASP 6 1_555 WA MG BCL . J BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc11 G NE2 HIS 34 J HIS 34 1_555 VA MG BCL . J BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc12 H NE2 HIS 35 K HIS 35 1_555 DB MG BCL . K BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C13 H29 N O' _chem_comp.formula_weight 215.375 _chem_comp.id DET _chem_comp.mon_nstd_flag . _chem_comp.name UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O DET sing 218 n n N CM1 DET sing 219 n n N CM2 DET sing 220 n n N C1 DET sing 221 n n CM1 HM11 DET sing 222 n n CM1 HM12 DET sing 223 n n CM1 HM13 DET sing 224 n n CM2 HM21 DET sing 225 n n CM2 HM22 DET sing 226 n n CM2 HM23 DET sing 227 n n C1 C2 DET sing 228 n n C1 H11 DET sing 229 n n C1 H12 DET sing 230 n n C2 C3 DET sing 231 n n C2 H21 DET sing 232 n n C2 H22 DET sing 233 n n C3 C4 DET sing 234 n n C3 H31 DET sing 235 n n C3 H32 DET sing 236 n n C4 C5 DET sing 237 n n C4 H41 DET sing 238 n n C4 H42 DET sing 239 n n C5 C6 DET sing 240 n n C5 H51 DET sing 241 n n C5 H52 DET sing 242 n n C6 C7 DET sing 243 n n C6 H61 DET sing 244 n n C6 H62 DET sing 245 n n C7 C8 DET sing 246 n n C7 H71 DET sing 247 n n C7 H72 DET sing 248 n n C8 C9 DET sing 249 n n C8 H81 DET sing 250 n n C8 H82 DET sing 251 n n C9 C10 DET sing 252 n n C9 H91 DET sing 253 n n C9 H92 DET sing 254 n n C10 C11 DET sing 255 n n C10 H101 DET sing 256 n n C10 H102 DET sing 257 n n C11 H111 DET sing 258 n n C11 H112 DET sing 259 n n C11 H113 DET sing 260 n n # _atom_sites.entry_id 1LGH _atom_sites.fract_transf_matrix[1][1] 0.010917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 BCL A 1 57 57 BCL BCL . J 3 BCL A 1 58 58 BCL BCL . K 4 LYC A 1 97 97 LYC LYC . L 5 DET A 1 75 75 DET DET . M 6 HTO A 1 62 62 HTO HTO . N 6 HTO A 1 66 66 HTO HTO . O 3 BCL B 1 59 59 BCL BCL . P 5 DET B 1 77 77 DET DET . Q 5 DET B 1 78 78 DET DET . R 6 HTO B 1 63 63 HTO HTO . S 6 HTO D 1 64 64 HTO HTO . T 6 HTO D 1 65 65 HTO HTO . U 3 BCL D 1 57 57 BCL BCL . V 3 BCL D 1 58 58 BCL BCL . W 4 LYC D 1 97 97 LYC LYC . X 5 DET D 1 75 75 DET DET . Y 6 HTO D 1 62 62 HTO HTO . Z 6 HTO D 1 98 64 HTO HTO . AA 6 HTO D 1 99 65 HTO HTO . BA 6 HTO D 1 66 66 HTO HTO . CA 6 HTO D 1 100 64 HTO HTO . DA 6 HTO E 1 61 61 HTO HTO . EA 3 BCL E 1 59 59 BCL BCL . FA 5 DET E 1 77 77 DET DET . GA 5 DET E 1 78 78 DET DET . HA 6 HTO E 1 79 61 HTO HTO . IA 6 HTO E 1 63 63 HTO HTO . JA 3 BCL G 1 57 57 BCL BCL . KA 3 BCL G 1 58 58 BCL BCL . LA 4 LYC G 1 97 97 LYC LYC . MA 5 DET G 1 75 75 DET DET . NA 6 HTO G 1 62 62 HTO HTO . OA 6 HTO G 1 66 66 HTO HTO . PA 3 BCL H 1 59 59 BCL BCL . QA 5 DET H 1 77 77 DET DET . RA 5 DET H 1 78 78 DET DET . SA 6 HTO H 1 63 63 HTO HTO . TA 6 HTO J 1 64 64 HTO HTO . UA 6 HTO J 1 65 65 HTO HTO . VA 3 BCL J 1 57 57 BCL BCL . WA 3 BCL J 1 58 58 BCL BCL . XA 4 LYC J 1 97 97 LYC LYC . YA 5 DET J 1 75 75 DET DET . ZA 6 HTO J 1 62 62 HTO HTO . AB 6 HTO J 1 98 65 HTO HTO . BB 6 HTO J 1 66 66 HTO HTO . CB 6 HTO K 1 61 61 HTO HTO . DB 3 BCL K 1 59 59 BCL BCL . EB 5 DET K 1 77 77 DET DET . FB 5 DET K 1 78 78 DET DET . GB 6 HTO K 1 79 61 HTO HTO . HB 6 HTO K 1 63 63 HTO HTO . IB 7 HOH A 1 98 6 HOH HOH . IB 7 HOH A 2 99 102 HOH HOH . IB 7 HOH A 3 100 112 HOH HOH . IB 7 HOH A 4 101 122 HOH HOH . JB 7 HOH B 1 79 1 HOH HOH . JB 7 HOH B 2 80 23 HOH HOH . JB 7 HOH B 3 81 36 HOH HOH . JB 7 HOH B 4 82 44 HOH HOH . JB 7 HOH B 5 83 105 HOH HOH . JB 7 HOH B 6 84 118 HOH HOH . JB 7 HOH B 7 85 119 HOH HOH . JB 7 HOH B 8 86 120 HOH HOH . JB 7 HOH B 9 87 121 HOH HOH . KB 7 HOH D 1 101 11 HOH HOH . KB 7 HOH D 2 102 12 HOH HOH . KB 7 HOH D 3 103 104 HOH HOH . KB 7 HOH D 4 104 6 HOH HOH . KB 7 HOH D 5 105 11 HOH HOH . KB 7 HOH D 6 106 102 HOH HOH . KB 7 HOH D 7 107 112 HOH HOH . KB 7 HOH D 8 108 122 HOH HOH . LB 7 HOH E 1 80 1 HOH HOH . LB 7 HOH E 2 81 12 HOH HOH . LB 7 HOH E 3 82 23 HOH HOH . LB 7 HOH E 4 83 36 HOH HOH . LB 7 HOH E 5 84 44 HOH HOH . LB 7 HOH E 6 85 104 HOH HOH . LB 7 HOH E 7 86 105 HOH HOH . LB 7 HOH E 8 87 118 HOH HOH . LB 7 HOH E 9 88 119 HOH HOH . LB 7 HOH E 10 89 120 HOH HOH . LB 7 HOH E 11 90 121 HOH HOH . MB 7 HOH G 1 98 6 HOH HOH . MB 7 HOH G 2 99 102 HOH HOH . MB 7 HOH G 3 100 112 HOH HOH . MB 7 HOH G 4 101 122 HOH HOH . NB 7 HOH H 1 79 1 HOH HOH . NB 7 HOH H 2 80 23 HOH HOH . NB 7 HOH H 3 81 36 HOH HOH . NB 7 HOH H 4 82 44 HOH HOH . NB 7 HOH H 5 83 104 HOH HOH . NB 7 HOH H 6 84 105 HOH HOH . NB 7 HOH H 7 85 118 HOH HOH . NB 7 HOH H 8 86 119 HOH HOH . NB 7 HOH H 9 87 120 HOH HOH . NB 7 HOH H 10 88 121 HOH HOH . OB 7 HOH J 1 99 11 HOH HOH . OB 7 HOH J 2 100 12 HOH HOH . OB 7 HOH J 3 101 6 HOH HOH . OB 7 HOH J 4 102 11 HOH HOH . OB 7 HOH J 5 103 102 HOH HOH . OB 7 HOH J 6 104 112 HOH HOH . OB 7 HOH J 7 105 122 HOH HOH . PB 7 HOH K 1 80 1 HOH HOH . PB 7 HOH K 2 81 12 HOH HOH . PB 7 HOH K 3 82 23 HOH HOH . PB 7 HOH K 4 83 36 HOH HOH . PB 7 HOH K 5 84 44 HOH HOH . PB 7 HOH K 6 85 104 HOH HOH . PB 7 HOH K 7 86 105 HOH HOH . PB 7 HOH K 8 87 118 HOH HOH . PB 7 HOH K 9 88 119 HOH HOH . PB 7 HOH K 10 89 120 HOH HOH . PB 7 HOH K 11 90 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DET . . . EB 5 75.721 2.397 43.823 1 118.26 ? N DET 77 K 1 HETATM 2 O O DET . . . EB 5 76.699 1.527 44.283 1 124.42 ? O DET 77 K 1 HETATM 3 C CM1 DET . . . EB 5 75.013 2.989 44.991 1 119.89 ? CM1 DET 77 K 1 HETATM 4 C CM2 DET . . . EB 5 76.373 3.466 43.049 1 120.03 ? CM2 DET 77 K 1 HETATM 5 C C1 DET . . . EB 5 74.74 1.64 42.973 1 109.24 ? C1 DET 77 K 1 HETATM 6 C C2 DET . . . EB 5 75.444 1.337 41.641 1 92.22 ? C2 DET 77 K 1 HETATM 7 C C3 DET . . . EB 5 74.538 0.558 40.715 1 77.65 ? C3 DET 77 K 1 HETATM 8 C C4 DET . . . EB 5 75.028 0.682 39.286 1 69.52 ? C4 DET 77 K 1 HETATM 9 C C5 DET . . . EB 5 74.036 0.061 38.325 1 61.79 ? C5 DET 77 K 1 HETATM 10 C C6 DET . . . EB 5 74.299 0.465 36.875 1 54.39 ? C6 DET 77 K 1 HETATM 11 C C7 DET . . . EB 5 73.275 -0.214 36.004 1 52.54 ? C7 DET 77 K 1 HETATM 12 C C8 DET . . . EB 5 73.586 -0.099 34.544 1 52.28 ? C8 DET 77 K 1 HETATM 13 C C9 DET . . . EB 5 72.833 1.034 33.867 1 51.46 ? C9 DET 77 K 1 HETATM 14 C C10 DET . . . EB 5 72.854 0.805 32.348 1 52.94 ? C10 DET 77 K 1 HETATM 15 C C11 DET . . . EB 5 72.357 2.001 31.59 1 60.94 ? C11 DET 77 K 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 15 #