data_1LGH
#
_model_server_result.job_id            --d54LJnsGOsHR_rryVVvQ 
_model_server_result.datetime_utc      '2024-11-04 22:55:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lgh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":78}' 
#
_entry.id    1LGH 
#
_exptl.entry_id    1LGH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              215.375 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LGH 
_cell.length_a            91.6 
_cell.length_b            91.6 
_cell.length_c            209.97 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LGH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS hexadecameric 16 author_and_software_defined_assembly 1 
PQS hexadecameric 16 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,IB,JB,KB,LB 1 1,2,3,4 
E,F,G,H,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,MB,NB,OB,PB 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.6 0 0 
3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 45.8 -45.8 0 
4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 45.8 45.8 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 P N N 
? 5 Q N N 
? 5 X N N 
? 5 FA N N 
? 5 GA N N 
? 5 MA N N 
? 5 QA N N 
? 5 RA N N 
? 5 YA N N 
? 5 EB N N 
? 5 FB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CB ALA 51 A ALA 51 3_545 Z O3 HTO . D HTO 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.627 ? 
covale ? covale2 C CB ALA 51 D ALA 51 1_555 S O3 HTO . D HTO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? 
covale ? covale3 CA O3 HTO . D HTO 100 1_555 E CB ALA 51 G ALA 51 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? 
covale ? covale4 G CB ALA 51 J ALA 51 1_555 TA O3 HTO . J HTO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? 
metalc ? metalc1 A OD2 ASP 6 A ASP 6 1_555 J MG BCL . A BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc2 A NE2 HIS 34 A HIS 34 1_555 I MG BCL . A BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc3 B NE2 HIS 35 B HIS 35 1_555 O MG BCL . B BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc4 C OD2 ASP 6 D ASP 6 1_555 V MG BCL . D BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc5 C NE2 HIS 34 D HIS 34 1_555 U MG BCL . D BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc6 D NE2 HIS 35 E HIS 35 1_555 EA MG BCL . E BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc7 E OD2 ASP 6 G ASP 6 1_555 KA MG BCL . G BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc8 E NE2 HIS 34 G HIS 34 1_555 JA MG BCL . G BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc9 F NE2 HIS 35 H HIS 35 1_555 PA MG BCL . H BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc10 G OD2 ASP 6 J ASP 6 1_555 WA MG BCL . J BCL 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc11 G NE2 HIS 34 J HIS 34 1_555 VA MG BCL . J BCL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc12 H NE2 HIS 35 K HIS 35 1_555 DB MG BCL . K BCL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
#
_chem_comp.formula           'C13 H29 N O' 
_chem_comp.formula_weight    215.375 
_chem_comp.id                DET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O DET sing 218 n n 
N CM1 DET sing 219 n n 
N CM2 DET sing 220 n n 
N C1 DET sing 221 n n 
CM1 HM11 DET sing 222 n n 
CM1 HM12 DET sing 223 n n 
CM1 HM13 DET sing 224 n n 
CM2 HM21 DET sing 225 n n 
CM2 HM22 DET sing 226 n n 
CM2 HM23 DET sing 227 n n 
C1 C2 DET sing 228 n n 
C1 H11 DET sing 229 n n 
C1 H12 DET sing 230 n n 
C2 C3 DET sing 231 n n 
C2 H21 DET sing 232 n n 
C2 H22 DET sing 233 n n 
C3 C4 DET sing 234 n n 
C3 H31 DET sing 235 n n 
C3 H32 DET sing 236 n n 
C4 C5 DET sing 237 n n 
C4 H41 DET sing 238 n n 
C4 H42 DET sing 239 n n 
C5 C6 DET sing 240 n n 
C5 H51 DET sing 241 n n 
C5 H52 DET sing 242 n n 
C6 C7 DET sing 243 n n 
C6 H61 DET sing 244 n n 
C6 H62 DET sing 245 n n 
C7 C8 DET sing 246 n n 
C7 H71 DET sing 247 n n 
C7 H72 DET sing 248 n n 
C8 C9 DET sing 249 n n 
C8 H81 DET sing 250 n n 
C8 H82 DET sing 251 n n 
C9 C10 DET sing 252 n n 
C9 H91 DET sing 253 n n 
C9 H92 DET sing 254 n n 
C10 C11 DET sing 255 n n 
C10 H101 DET sing 256 n n 
C10 H102 DET sing 257 n n 
C11 H111 DET sing 258 n n 
C11 H112 DET sing 259 n n 
C11 H113 DET sing 260 n n 
#
_atom_sites.entry_id                     1LGH 
_atom_sites.fract_transf_matrix[1][1]    0.010917 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010917 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004763 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 BCL A 1 57 57 BCL BCL . 
J 3 BCL A 1 58 58 BCL BCL . 
K 4 LYC A 1 97 97 LYC LYC . 
L 5 DET A 1 75 75 DET DET . 
M 6 HTO A 1 62 62 HTO HTO . 
N 6 HTO A 1 66 66 HTO HTO . 
O 3 BCL B 1 59 59 BCL BCL . 
P 5 DET B 1 77 77 DET DET . 
Q 5 DET B 1 78 78 DET DET . 
R 6 HTO B 1 63 63 HTO HTO . 
S 6 HTO D 1 64 64 HTO HTO . 
T 6 HTO D 1 65 65 HTO HTO . 
U 3 BCL D 1 57 57 BCL BCL . 
V 3 BCL D 1 58 58 BCL BCL . 
W 4 LYC D 1 97 97 LYC LYC . 
X 5 DET D 1 75 75 DET DET . 
Y 6 HTO D 1 62 62 HTO HTO . 
Z 6 HTO D 1 98 64 HTO HTO . 
AA 6 HTO D 1 99 65 HTO HTO . 
BA 6 HTO D 1 66 66 HTO HTO . 
CA 6 HTO D 1 100 64 HTO HTO . 
DA 6 HTO E 1 61 61 HTO HTO . 
EA 3 BCL E 1 59 59 BCL BCL . 
FA 5 DET E 1 77 77 DET DET . 
GA 5 DET E 1 78 78 DET DET . 
HA 6 HTO E 1 79 61 HTO HTO . 
IA 6 HTO E 1 63 63 HTO HTO . 
JA 3 BCL G 1 57 57 BCL BCL . 
KA 3 BCL G 1 58 58 BCL BCL . 
LA 4 LYC G 1 97 97 LYC LYC . 
MA 5 DET G 1 75 75 DET DET . 
NA 6 HTO G 1 62 62 HTO HTO . 
OA 6 HTO G 1 66 66 HTO HTO . 
PA 3 BCL H 1 59 59 BCL BCL . 
QA 5 DET H 1 77 77 DET DET . 
RA 5 DET H 1 78 78 DET DET . 
SA 6 HTO H 1 63 63 HTO HTO . 
TA 6 HTO J 1 64 64 HTO HTO . 
UA 6 HTO J 1 65 65 HTO HTO . 
VA 3 BCL J 1 57 57 BCL BCL . 
WA 3 BCL J 1 58 58 BCL BCL . 
XA 4 LYC J 1 97 97 LYC LYC . 
YA 5 DET J 1 75 75 DET DET . 
ZA 6 HTO J 1 62 62 HTO HTO . 
AB 6 HTO J 1 98 65 HTO HTO . 
BB 6 HTO J 1 66 66 HTO HTO . 
CB 6 HTO K 1 61 61 HTO HTO . 
DB 3 BCL K 1 59 59 BCL BCL . 
EB 5 DET K 1 77 77 DET DET . 
FB 5 DET K 1 78 78 DET DET . 
GB 6 HTO K 1 79 61 HTO HTO . 
HB 6 HTO K 1 63 63 HTO HTO . 
IB 7 HOH A 1 98 6 HOH HOH . 
IB 7 HOH A 2 99 102 HOH HOH . 
IB 7 HOH A 3 100 112 HOH HOH . 
IB 7 HOH A 4 101 122 HOH HOH . 
JB 7 HOH B 1 79 1 HOH HOH . 
JB 7 HOH B 2 80 23 HOH HOH . 
JB 7 HOH B 3 81 36 HOH HOH . 
JB 7 HOH B 4 82 44 HOH HOH . 
JB 7 HOH B 5 83 105 HOH HOH . 
JB 7 HOH B 6 84 118 HOH HOH . 
JB 7 HOH B 7 85 119 HOH HOH . 
JB 7 HOH B 8 86 120 HOH HOH . 
JB 7 HOH B 9 87 121 HOH HOH . 
KB 7 HOH D 1 101 11 HOH HOH . 
KB 7 HOH D 2 102 12 HOH HOH . 
KB 7 HOH D 3 103 104 HOH HOH . 
KB 7 HOH D 4 104 6 HOH HOH . 
KB 7 HOH D 5 105 11 HOH HOH . 
KB 7 HOH D 6 106 102 HOH HOH . 
KB 7 HOH D 7 107 112 HOH HOH . 
KB 7 HOH D 8 108 122 HOH HOH . 
LB 7 HOH E 1 80 1 HOH HOH . 
LB 7 HOH E 2 81 12 HOH HOH . 
LB 7 HOH E 3 82 23 HOH HOH . 
LB 7 HOH E 4 83 36 HOH HOH . 
LB 7 HOH E 5 84 44 HOH HOH . 
LB 7 HOH E 6 85 104 HOH HOH . 
LB 7 HOH E 7 86 105 HOH HOH . 
LB 7 HOH E 8 87 118 HOH HOH . 
LB 7 HOH E 9 88 119 HOH HOH . 
LB 7 HOH E 10 89 120 HOH HOH . 
LB 7 HOH E 11 90 121 HOH HOH . 
MB 7 HOH G 1 98 6 HOH HOH . 
MB 7 HOH G 2 99 102 HOH HOH . 
MB 7 HOH G 3 100 112 HOH HOH . 
MB 7 HOH G 4 101 122 HOH HOH . 
NB 7 HOH H 1 79 1 HOH HOH . 
NB 7 HOH H 2 80 23 HOH HOH . 
NB 7 HOH H 3 81 36 HOH HOH . 
NB 7 HOH H 4 82 44 HOH HOH . 
NB 7 HOH H 5 83 104 HOH HOH . 
NB 7 HOH H 6 84 105 HOH HOH . 
NB 7 HOH H 7 85 118 HOH HOH . 
NB 7 HOH H 8 86 119 HOH HOH . 
NB 7 HOH H 9 87 120 HOH HOH . 
NB 7 HOH H 10 88 121 HOH HOH . 
OB 7 HOH J 1 99 11 HOH HOH . 
OB 7 HOH J 2 100 12 HOH HOH . 
OB 7 HOH J 3 101 6 HOH HOH . 
OB 7 HOH J 4 102 11 HOH HOH . 
OB 7 HOH J 5 103 102 HOH HOH . 
OB 7 HOH J 6 104 112 HOH HOH . 
OB 7 HOH J 7 105 122 HOH HOH . 
PB 7 HOH K 1 80 1 HOH HOH . 
PB 7 HOH K 2 81 12 HOH HOH . 
PB 7 HOH K 3 82 23 HOH HOH . 
PB 7 HOH K 4 83 36 HOH HOH . 
PB 7 HOH K 5 84 44 HOH HOH . 
PB 7 HOH K 6 85 104 HOH HOH . 
PB 7 HOH K 7 86 105 HOH HOH . 
PB 7 HOH K 8 87 118 HOH HOH . 
PB 7 HOH K 9 88 119 HOH HOH . 
PB 7 HOH K 10 89 120 HOH HOH . 
PB 7 HOH K 11 90 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DET . . . Q 5 70.385 -21.451 68.894 1 112.46 ? N DET 78 B 1 
HETATM 2 O O DET . . . Q 5 70.748 -22.639 68.255 1 109.79 ? O DET 78 B 1 
HETATM 3 C CM1 DET . . . Q 5 68.982 -21.181 68.634 1 113.88 ? CM1 DET 78 B 1 
HETATM 4 C CM2 DET . . . Q 5 70.547 -21.599 70.337 1 113.19 ? CM2 DET 78 B 1 
HETATM 5 C C1 DET . . . Q 5 71.28 -20.347 68.382 1 112 ? C1 DET 78 B 1 
HETATM 6 C C2 DET . . . Q 5 70.53 -19.015 68.638 1 111.8 ? C2 DET 78 B 1 
HETATM 7 C C3 DET . . . Q 5 71.461 -17.784 68.738 1 103.5 ? C3 DET 78 B 1 
HETATM 8 C C4 DET . . . Q 5 71.061 -16.891 69.947 1 92.84 ? C4 DET 78 B 1 
HETATM 9 C C5 DET . . . Q 5 69.784 -17.399 70.655 1 79.89 ? C5 DET 78 B 1 
HETATM 10 C C6 DET . . . Q 5 69.675 -16.848 72.05 1 71.59 ? C6 DET 78 B 1 
HETATM 11 C C7 DET . . . Q 5 68.646 -17.633 72.81 1 66.69 ? C7 DET 78 B 1 
HETATM 12 C C8 DET . . . Q 5 68.806 -17.446 74.305 1 63.46 ? C8 DET 78 B 1 
HETATM 13 C C9 DET . . . Q 5 67.845 -18.359 75.068 1 57.88 ? C9 DET 78 B 1 
HETATM 14 C C10 DET . . . Q 5 68.181 -18.385 76.536 1 58.66 ? C10 DET 78 B 1 
HETATM 15 C C11 DET . . . Q 5 68.33 -16.961 77.058 1 65.58 ? C11 DET 78 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           15 
#