data_1LH6
#
_model_server_result.job_id            g_5Zcbtt_pBekz3cgjpDlg 
_model_server_result.datetime_utc      '2024-11-17 07:51:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lh6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":154}' 
#
_entry.id    1LH6 
#
_exptl.entry_id    1LH6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         99.6 
_cell.entry_id            1LH6 
_cell.length_a            92.92 
_cell.length_b            38.64 
_cell.length_c            52.36 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LH6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'B 1 1 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc2 B FE HEM . A HEM 154 1_555 C N NIO . A NIO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     1LH6 
_atom_sites.fract_transf_matrix[1][1]    0.010762 
_atom_sites.fract_transf_matrix[1][2]    0.00182 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026247 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019099 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 154 1 HEM HEM . 
C 3 NIO A 1 155 2 NIO NAC . 
D 4 HOH A 1 156 3 HOH HOH . 
D 4 HOH A 2 157 4 HOH HOH . 
D 4 HOH A 3 158 5 HOH HOH . 
D 4 HOH A 4 159 6 HOH HOH . 
D 4 HOH A 5 160 7 HOH HOH . 
D 4 HOH A 6 161 8 HOH HOH . 
D 4 HOH A 7 162 9 HOH HOH . 
D 4 HOH A 8 163 10 HOH HOH . 
D 4 HOH A 9 164 11 HOH HOH . 
D 4 HOH A 10 165 12 HOH HOH . 
D 4 HOH A 11 166 13 HOH HOH . 
D 4 HOH A 12 167 14 HOH HOH . 
D 4 HOH A 13 168 15 HOH HOH . 
D 4 HOH A 14 169 16 HOH HOH . 
D 4 HOH A 15 170 17 HOH HOH . 
D 4 HOH A 16 171 18 HOH HOH . 
D 4 HOH A 17 172 19 HOH HOH . 
D 4 HOH A 18 173 20 HOH HOH . 
D 4 HOH A 19 174 21 HOH HOH . 
D 4 HOH A 20 175 22 HOH HOH . 
D 4 HOH A 21 176 23 HOH HOH . 
D 4 HOH A 22 177 24 HOH HOH . 
D 4 HOH A 23 178 25 HOH HOH . 
D 4 HOH A 24 179 26 HOH HOH . 
D 4 HOH A 25 180 27 HOH HOH . 
D 4 HOH A 26 181 28 HOH HOH . 
D 4 HOH A 27 182 29 HOH HOH . 
D 4 HOH A 28 183 30 HOH HOH . 
D 4 HOH A 29 184 31 HOH HOH . 
D 4 HOH A 30 185 32 HOH HOH . 
D 4 HOH A 31 186 33 HOH HOH . 
D 4 HOH A 32 187 34 HOH HOH . 
D 4 HOH A 33 188 35 HOH HOH . 
D 4 HOH A 34 189 36 HOH HOH . 
D 4 HOH A 35 190 37 HOH HOH . 
D 4 HOH A 36 191 38 HOH HOH . 
D 4 HOH A 37 192 39 HOH HOH . 
D 4 HOH A 38 193 40 HOH HOH . 
D 4 HOH A 39 194 41 HOH HOH . 
D 4 HOH A 40 195 42 HOH HOH . 
D 4 HOH A 41 196 43 HOH HOH . 
D 4 HOH A 42 197 44 HOH HOH . 
D 4 HOH A 43 198 45 HOH HOH . 
D 4 HOH A 44 199 46 HOH HOH . 
D 4 HOH A 45 200 47 HOH HOH . 
D 4 HOH A 46 201 48 HOH HOH . 
D 4 HOH A 47 202 49 HOH HOH . 
D 4 HOH A 48 203 50 HOH HOH . 
D 4 HOH A 49 204 51 HOH HOH . 
D 4 HOH A 50 205 52 HOH HOH . 
D 4 HOH A 51 206 53 HOH HOH . 
D 4 HOH A 52 207 54 HOH HOH . 
D 4 HOH A 53 208 55 HOH HOH . 
D 4 HOH A 54 209 56 HOH HOH . 
D 4 HOH A 55 210 57 HOH HOH . 
D 4 HOH A 56 211 58 HOH HOH . 
D 4 HOH A 57 212 59 HOH HOH . 
D 4 HOH A 58 213 60 HOH HOH . 
D 4 HOH A 59 214 61 HOH HOH . 
D 4 HOH A 60 215 62 HOH HOH . 
D 4 HOH A 61 216 63 HOH HOH . 
D 4 HOH A 62 217 64 HOH HOH . 
D 4 HOH A 63 218 65 HOH HOH . 
D 4 HOH A 64 219 66 HOH HOH . 
D 4 HOH A 65 220 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 28.716 12.456 -1.778 1 29.49 ? CHA HEM 154 A 1 
HETATM 2 C CHB HEM . . . B 2 25.184 8.574 -2.627 1 20.22 ? CHB HEM 154 A 1 
HETATM 3 C CHC HEM . . . B 2 25.498 7.096 2.034 1 6.3 ? CHC HEM 154 A 1 
HETATM 4 C CHD HEM . . . B 2 28.199 11.562 2.98 1 12.65 ? CHD HEM 154 A 1 
HETATM 5 C C1A HEM . . . B 2 27.788 11.507 -2.479 1 11.5 ? C1A HEM 154 A 1 
HETATM 6 C C2A HEM . . . B 2 27.432 11.585 -3.856 1 18.34 ? C2A HEM 154 A 1 
HETATM 7 C C3A HEM . . . B 2 26.402 10.509 -4.073 1 18.35 ? C3A HEM 154 A 1 
HETATM 8 C C4A HEM . . . B 2 26.14 9.759 -2.829 1 38.36 ? C4A HEM 154 A 1 
HETATM 9 C CMA HEM . . . B 2 25.508 10.123 -5.312 1 19.83 ? CMA HEM 154 A 1 
HETATM 10 C CAA HEM . . . B 2 28.012 12.804 -4.777 1 41.05 ? CAA HEM 154 A 1 
HETATM 11 C CBA HEM . . . B 2 26.914 13.699 -5.158 1 50.96 ? CBA HEM 154 A 1 
HETATM 12 C CGA HEM . . . B 2 27.339 14.767 -6.241 0 0 ? CGA HEM 154 A 1 
HETATM 13 O O1A HEM . . . B 2 28.19 14.557 -7.098 0 0 ? O1A HEM 154 A 1 
HETATM 14 O O2A HEM . . . B 2 26.533 15.561 -6.541 0 0 ? O2A HEM 154 A 1 
HETATM 15 C C1B HEM . . . B 2 24.926 7.824 -1.441 1 26.07 ? C1B HEM 154 A 1 
HETATM 16 C C2B HEM . . . B 2 23.948 6.575 -1.295 1 30.17 ? C2B HEM 154 A 1 
HETATM 17 C C3B HEM . . . B 2 24.1 6.067 -0.012 1 22.65 ? C3B HEM 154 A 1 
HETATM 18 C C4B HEM . . . B 2 25.117 7.1 0.668 1 7.75 ? C4B HEM 154 A 1 
HETATM 19 C CMB HEM . . . B 2 22.989 6.047 -2.443 1 3.6 ? CMB HEM 154 A 1 
HETATM 20 C CAB HEM . . . B 2 23.364 4.756 0.677 1 14.91 ? CAB HEM 154 A 1 
HETATM 21 C CBB HEM . . . B 2 22.818 3.635 -0.036 1 5.04 ? CBB HEM 154 A 1 
HETATM 22 C C1C HEM . . . B 2 26.238 8.19 2.719 1 16.59 ? C1C HEM 154 A 1 
HETATM 23 C C2C HEM . . . B 2 26.485 8.287 4.155 1 17.1 ? C2C HEM 154 A 1 
HETATM 24 C C3C HEM . . . B 2 27.132 9.569 4.401 1 19.06 ? C3C HEM 154 A 1 
HETATM 25 C C4C HEM . . . B 2 27.394 10.285 3.134 1 23.98 ? C4C HEM 154 A 1 
HETATM 26 C CMC HEM . . . B 2 26.057 7.178 5.234 1 6.99 ? CMC HEM 154 A 1 
HETATM 27 C CAC HEM . . . B 2 27.577 10.153 5.789 1 14.87 ? CAC HEM 154 A 1 
HETATM 28 C CBC HEM . . . B 2 26.812 10.894 6.441 1 6.12 ? CBC HEM 154 A 1 
HETATM 29 C C1D HEM . . . B 2 28.704 12.127 1.799 1 12.58 ? C1D HEM 154 A 1 
HETATM 30 C C2D HEM . . . B 2 29.595 13.467 1.667 1 13.14 ? C2D HEM 154 A 1 
HETATM 31 C C3D HEM . . . B 2 29.72 13.712 0.332 1 22.02 ? C3D HEM 154 A 1 
HETATM 32 C C4D HEM . . . B 2 28.969 12.52 -0.382 1 31.71 ? C4D HEM 154 A 1 
HETATM 33 C CMD HEM . . . B 2 30.152 14.367 2.888 1 10.48 ? CMD HEM 154 A 1 
HETATM 34 C CAD HEM . . . B 2 30.382 15.034 -0.387 1 17.34 ? CAD HEM 154 A 1 
HETATM 35 C CBD HEM . . . B 2 29.367 16.006 -0.55 1 24.05 ? CBD HEM 154 A 1 
HETATM 36 C CGD HEM . . . B 2 30.196 17.374 -0.915 1 49.61 ? CGD HEM 154 A 1 
HETATM 37 O O1D HEM . . . B 2 30.334 17.734 -2.118 1 44.19 ? O1D HEM 154 A 1 
HETATM 38 O O2D HEM . . . B 2 30.609 18.208 0.009 1 47.49 ? O2D HEM 154 A 1 
HETATM 39 N NA HEM . . . B 2 26.972 10.433 -1.89 1 22.78 ? NA HEM 154 A 1 
HETATM 40 N NB HEM . . . B 2 25.546 8.113 -0.225 1 10.12 ? NB HEM 154 A 1 
HETATM 41 N NC HEM . . . B 2 26.834 9.432 2.121 1 14.64 ? NC HEM 154 A 1 
HETATM 42 N ND HEM . . . B 2 28.411 11.565 0.556 1 19.16 ? ND HEM 154 A 1 
HETATM 43 FE FE HEM . . . B 2 26.826 9.971 0.242 1 16.26 ? FE HEM 154 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           639 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#