data_1LHD
#
_model_server_result.job_id            WDX2PZX4amM86CvX8XN1sA 
_model_server_result.datetime_utc      '2024-11-19 09:44:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lhd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    1LHD 
#
_exptl.entry_id    1LHD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              432.322 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            AC-(D)PHE-PRO-BOROLYS-OH 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.9 
_cell.angle_gamma         90 
_cell.entry_id            1LHD 
_cell.length_a            70.3 
_cell.length_b            71.9 
_cell.length_c            71.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LHD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 B OG SER 205 H SER 195 1_555 D B1 DI2 . H DI2 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? 
#
_chem_comp.formula           'C21 H33 B N4 O5' 
_chem_comp.formula_weight    432.322 
_chem_comp.id                DI2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              AC-(D)PHE-PRO-BOROLYS-OH 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
B1 C DI2 sing 83 n n 
B1 O DI2 sing 84 n n 
B1 O1 DI2 sing 85 n n 
C C2 DI2 sing 86 n n 
C N DI2 sing 87 n n 
C H DI2 sing 88 n n 
C2 C3 DI2 sing 89 n n 
C2 H21A DI2 sing 90 n n 
C2 H22 DI2 sing 91 n n 
C3 C4 DI2 sing 92 n n 
C3 H31 DI2 sing 93 n n 
C3 H32 DI2 sing 94 n n 
C4 C5 DI2 sing 95 n n 
C4 H41 DI2 sing 96 n n 
C4 H42 DI2 sing 97 n n 
C5 N1 DI2 sing 98 n n 
C5 H51 DI2 sing 99 n n 
C5 H52 DI2 sing 100 n n 
C6 C7 DI2 sing 101 n n 
C6 C8 DI2 sing 102 n n 
C6 N2 DI2 sing 103 n n 
C6 H6 DI2 sing 104 n n 
C7 N DI2 sing 105 n n 
C7 O2 DI2 doub 106 n n 
C8 C9 DI2 sing 107 n n 
C8 H81 DI2 sing 108 n n 
C8 H82 DI2 sing 109 n n 
C9 C10 DI2 sing 110 n n 
C9 H91 DI2 sing 111 n n 
C9 H92 DI2 sing 112 n n 
C10 N2 DI2 sing 113 n n 
C10 H101 DI2 sing 114 n n 
C10 H102 DI2 sing 115 n n 
C11 C13 DI2 sing 116 n n 
C11 N2 DI2 sing 117 n n 
C11 O3 DI2 doub 118 n n 
C12 C13 DI2 sing 119 n n 
C12 C20 DI2 sing 120 n n 
C12 H121 DI2 sing 121 n n 
C12 H122 DI2 sing 122 n n 
C13 N3 DI2 sing 123 n n 
C13 H13 DI2 sing 124 n n 
C14 C15 DI2 sing 125 n n 
C14 N3 DI2 sing 126 n n 
C14 O4 DI2 doub 127 n n 
C15 H151 DI2 sing 128 n n 
C15 H152 DI2 sing 129 n n 
C15 H153 DI2 sing 130 n n 
C16 C17 DI2 doub 131 n y 
C16 C21 DI2 sing 132 n y 
C16 H16 DI2 sing 133 n n 
C17 C18 DI2 sing 134 n y 
C17 H17 DI2 sing 135 n n 
C18 C19 DI2 doub 136 n y 
C18 H18 DI2 sing 137 n n 
C19 C20 DI2 sing 138 n y 
C19 H19 DI2 sing 139 n n 
C20 C21 DI2 doub 140 n y 
C21 H21 DI2 sing 141 n n 
N HN DI2 sing 142 n n 
N1 HN11 DI2 sing 143 n n 
N1 HN12 DI2 sing 144 n n 
N3 HN3 DI2 sing 145 n n 
O HO DI2 sing 146 n n 
O1 HO1 DI2 sing 147 n n 
#
_atom_sites.entry_id                     1LHD 
_atom_sites.fract_transf_matrix[1][1]    0.014225 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002739 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013908 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 DI2 H 1 400 400 DI2 DI2 . 
E 5 HOH L 1 503 503 HOH HOH . 
E 5 HOH L 2 515 515 HOH HOH . 
E 5 HOH L 3 541 541 HOH HOH . 
E 5 HOH L 4 546 546 HOH HOH . 
E 5 HOH L 5 555 555 HOH HOH . 
E 5 HOH L 6 560 560 HOH HOH . 
E 5 HOH L 7 593 593 HOH HOH . 
E 5 HOH L 8 595 595 HOH HOH . 
E 5 HOH L 9 602 602 HOH HOH . 
E 5 HOH L 10 636 636 HOH HOH . 
F 5 HOH H 1 501 501 HOH HOH . 
F 5 HOH H 2 502 502 HOH HOH . 
F 5 HOH H 3 504 504 HOH HOH . 
F 5 HOH H 4 505 505 HOH HOH . 
F 5 HOH H 5 506 506 HOH HOH . 
F 5 HOH H 6 507 507 HOH HOH . 
F 5 HOH H 7 508 508 HOH HOH . 
F 5 HOH H 8 511 511 HOH HOH . 
F 5 HOH H 9 512 512 HOH HOH . 
F 5 HOH H 10 513 513 HOH HOH . 
F 5 HOH H 11 514 514 HOH HOH . 
F 5 HOH H 12 517 517 HOH HOH . 
F 5 HOH H 13 519 519 HOH HOH . 
F 5 HOH H 14 522 522 HOH HOH . 
F 5 HOH H 15 523 523 HOH HOH . 
F 5 HOH H 16 524 524 HOH HOH . 
F 5 HOH H 17 527 527 HOH HOH . 
F 5 HOH H 18 528 528 HOH HOH . 
F 5 HOH H 19 529 529 HOH HOH . 
F 5 HOH H 20 531 531 HOH HOH . 
F 5 HOH H 21 532 532 HOH HOH . 
F 5 HOH H 22 533 533 HOH HOH . 
F 5 HOH H 23 535 535 HOH HOH . 
F 5 HOH H 24 537 537 HOH HOH . 
F 5 HOH H 25 539 539 HOH HOH . 
F 5 HOH H 26 543 543 HOH HOH . 
F 5 HOH H 27 545 545 HOH HOH . 
F 5 HOH H 28 549 549 HOH HOH . 
F 5 HOH H 29 550 550 HOH HOH . 
F 5 HOH H 30 551 551 HOH HOH . 
F 5 HOH H 31 552 552 HOH HOH . 
F 5 HOH H 32 553 553 HOH HOH . 
F 5 HOH H 33 554 554 HOH HOH . 
F 5 HOH H 34 556 556 HOH HOH . 
F 5 HOH H 35 557 557 HOH HOH . 
F 5 HOH H 36 558 558 HOH HOH . 
F 5 HOH H 37 559 559 HOH HOH . 
F 5 HOH H 38 561 561 HOH HOH . 
F 5 HOH H 39 562 562 HOH HOH . 
F 5 HOH H 40 563 563 HOH HOH . 
F 5 HOH H 41 564 564 HOH HOH . 
F 5 HOH H 42 565 565 HOH HOH . 
F 5 HOH H 43 566 566 HOH HOH . 
F 5 HOH H 44 567 567 HOH HOH . 
F 5 HOH H 45 568 568 HOH HOH . 
F 5 HOH H 46 569 569 HOH HOH . 
F 5 HOH H 47 570 570 HOH HOH . 
F 5 HOH H 48 571 571 HOH HOH . 
F 5 HOH H 49 572 572 HOH HOH . 
F 5 HOH H 50 573 573 HOH HOH . 
F 5 HOH H 51 574 574 HOH HOH . 
F 5 HOH H 52 575 575 HOH HOH . 
F 5 HOH H 53 577 577 HOH HOH . 
F 5 HOH H 54 578 578 HOH HOH . 
F 5 HOH H 55 579 579 HOH HOH . 
F 5 HOH H 56 580 580 HOH HOH . 
F 5 HOH H 57 581 581 HOH HOH . 
F 5 HOH H 58 582 582 HOH HOH . 
F 5 HOH H 59 583 583 HOH HOH . 
F 5 HOH H 60 584 584 HOH HOH . 
F 5 HOH H 61 585 585 HOH HOH . 
F 5 HOH H 62 586 586 HOH HOH . 
F 5 HOH H 63 587 587 HOH HOH . 
F 5 HOH H 64 588 588 HOH HOH . 
F 5 HOH H 65 589 589 HOH HOH . 
F 5 HOH H 66 590 590 HOH HOH . 
F 5 HOH H 67 594 594 HOH HOH . 
F 5 HOH H 68 598 598 HOH HOH . 
F 5 HOH H 69 600 600 HOH HOH . 
F 5 HOH H 70 601 601 HOH HOH . 
F 5 HOH H 71 603 603 HOH HOH . 
F 5 HOH H 72 604 604 HOH HOH . 
F 5 HOH H 73 605 605 HOH HOH . 
F 5 HOH H 74 608 608 HOH HOH . 
F 5 HOH H 75 610 610 HOH HOH . 
F 5 HOH H 76 611 611 HOH HOH . 
F 5 HOH H 77 614 614 HOH HOH . 
F 5 HOH H 78 615 615 HOH HOH . 
F 5 HOH H 79 616 616 HOH HOH . 
F 5 HOH H 80 617 617 HOH HOH . 
F 5 HOH H 81 619 619 HOH HOH . 
F 5 HOH H 82 620 620 HOH HOH . 
F 5 HOH H 83 621 621 HOH HOH . 
F 5 HOH H 84 622 622 HOH HOH . 
F 5 HOH H 85 623 623 HOH HOH . 
F 5 HOH H 86 624 624 HOH HOH . 
F 5 HOH H 87 625 625 HOH HOH . 
F 5 HOH H 88 626 626 HOH HOH . 
F 5 HOH H 89 628 628 HOH HOH . 
F 5 HOH H 90 629 629 HOH HOH . 
F 5 HOH H 91 630 630 HOH HOH . 
F 5 HOH H 92 631 631 HOH HOH . 
F 5 HOH H 93 632 632 HOH HOH . 
F 5 HOH H 94 634 634 HOH HOH . 
F 5 HOH H 95 635 635 HOH HOH . 
F 5 HOH H 96 637 637 HOH HOH . 
F 5 HOH H 97 638 638 HOH HOH . 
F 5 HOH H 98 640 640 HOH HOH . 
F 5 HOH H 99 642 642 HOH HOH . 
F 5 HOH H 100 643 643 HOH HOH . 
F 5 HOH H 101 644 644 HOH HOH . 
G 5 HOH I 1 510 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B1 DI2 . . . D 4 14.99 -10.558 17.999 1 13.98 ? B1 DI2 400 H 1 
HETATM 2 C C DI2 . . . D 4 14.683 -11.526 19.203 1 14 ? C DI2 400 H 1 
HETATM 3 C C2 DI2 . . . D 4 13.478 -10.931 19.943 1 13.77 ? C2 DI2 400 H 1 
HETATM 4 C C3 DI2 . . . D 4 13.088 -11.44 21.324 1 13.56 ? C3 DI2 400 H 1 
HETATM 5 C C4 DI2 . . . D 4 11.877 -12.372 21.293 1 13.46 ? C4 DI2 400 H 1 
HETATM 6 C C5 DI2 . . . D 4 11.561 -12.879 22.616 1 13.3 ? C5 DI2 400 H 1 
HETATM 7 C C6 DI2 . . . D 4 17.851 -12.845 21.077 1 14.55 ? C6 DI2 400 H 1 
HETATM 8 C C7 DI2 . . . D 4 16.61 -12.802 20.126 1 14.31 ? C7 DI2 400 H 1 
HETATM 9 C C8 DI2 . . . D 4 19.161 -12.617 20.306 1 14.48 ? C8 DI2 400 H 1 
HETATM 10 C C9 DI2 . . . D 4 19.835 -13.971 20.148 1 14.63 ? C9 DI2 400 H 1 
HETATM 11 C C10 DI2 . . . D 4 19.241 -14.887 21.204 1 14.63 ? C10 DI2 400 H 1 
HETATM 12 C C11 DI2 . . . D 4 17.128 -14.732 22.549 1 14.68 ? C11 DI2 400 H 1 
HETATM 13 C C12 DI2 . . . D 4 17.82 -16.093 24.689 1 14.72 ? C12 DI2 400 H 1 
HETATM 14 C C13 DI2 . . . D 4 17.267 -16.14 23.201 1 15.1 ? C13 DI2 400 H 1 
HETATM 15 C C14 DI2 . . . D 4 15.75 -18.007 22.601 1 15.99 ? C14 DI2 400 H 1 
HETATM 16 C C15 DI2 . . . D 4 14.332 -18.578 22.625 1 15.65 ? C15 DI2 400 H 1 
HETATM 17 C C16 DI2 . . . D 4 21.604 -15.385 24.351 1 14.42 ? C16 DI2 400 H 1 
HETATM 18 C C17 DI2 . . . D 4 21.735 -14.232 25.108 1 14.32 ? C17 DI2 400 H 1 
HETATM 19 C C18 DI2 . . . D 4 20.62 -13.681 25.741 1 14.4 ? C18 DI2 400 H 1 
HETATM 20 C C19 DI2 . . . D 4 19.362 -14.266 25.6 1 14.36 ? C19 DI2 400 H 1 
HETATM 21 C C20 DI2 . . . D 4 19.218 -15.43 24.835 1 14.55 ? C20 DI2 400 H 1 
HETATM 22 C C21 DI2 . . . D 4 20.352 -15.995 24.212 1 14.48 ? C21 DI2 400 H 1 
HETATM 23 N N DI2 . . . D 4 15.882 -11.661 20.12 1 13.97 ? N DI2 400 H 1 
HETATM 24 N N1 DI2 . . . D 4 10.425 -12.606 23.397 1 13.59 ? N1 DI2 400 H 1 
HETATM 25 N N2 DI2 . . . D 4 18.047 -14.213 21.697 1 14.65 ? N2 DI2 400 H 1 
HETATM 26 N N3 DI2 . . . D 4 15.936 -16.803 23.177 1 15.4 ? N3 DI2 400 H 1 
HETATM 27 O O DI2 . . . D 4 13.82 -10.488 17.157 1 14.36 ? O DI2 400 H 1 
HETATM 28 O O1 DI2 . . . D 4 16.091 -10.868 17.168 1 14.02 ? O1 DI2 400 H 1 
HETATM 29 O O2 DI2 . . . D 4 16.397 -13.794 19.407 1 14.09 ? O2 DI2 400 H 1 
HETATM 30 O O3 DI2 . . . D 4 16.137 -14.053 22.865 1 14.67 ? O3 DI2 400 H 1 
HETATM 31 O O4 DI2 . . . D 4 16.656 -18.651 22.038 1 16.44 ? O4 DI2 400 H 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          47 
_model_server_stats.element_count           31 
#