data_1LHE
#
_model_server_result.job_id            1KsdV18Mq1RE2voT_ijQ2A 
_model_server_result.datetime_utc      '2024-11-19 09:52:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lhe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    1LHE 
#
_exptl.entry_id    1LHE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.347 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.3 
_cell.angle_gamma         90 
_cell.entry_id            1LHE 
_cell.length_a            70.8 
_cell.length_b            72.4 
_cell.length_c            72.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LHE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
covale ? covale1 B OG SER 205 H SER 195 1_555 D B1 DI3 . H DI3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.581 ? 
#
_chem_comp.formula           'C22 H34 B N5 O5' 
_chem_comp.formula_weight    459.347 
_chem_comp.id                DI3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              AC-(D)PHE-PRO-BORO-N-BUTYL-AMIDINO-GLYCINE-OH 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
B1 C DI3 sing 83 n n 
B1 O DI3 sing 84 n n 
B1 O1 DI3 sing 85 n n 
C C2 DI3 sing 86 n n 
C N DI3 sing 87 n n 
C H DI3 sing 88 n n 
C2 C3 DI3 sing 89 n n 
C2 H21 DI3 sing 90 n n 
C2 H22A DI3 sing 91 n n 
C3 C4 DI3 sing 92 n n 
C3 H31 DI3 sing 93 n n 
C3 H32 DI3 sing 94 n n 
C4 C5 DI3 sing 95 n n 
C4 H41 DI3 sing 96 n n 
C4 H42 DI3 sing 97 n n 
C5 C6 DI3 sing 98 n n 
C5 H51 DI3 sing 99 n n 
C5 H52 DI3 sing 100 n n 
C6 N1 DI3 doub 101 n n 
C6 N2 DI3 sing 102 n n 
C7 C8 DI3 sing 103 n n 
C7 C9 DI3 sing 104 n n 
C7 N3 DI3 sing 105 n n 
C7 H7 DI3 sing 106 n n 
C8 N DI3 sing 107 n n 
C8 O2 DI3 doub 108 n n 
C9 C10 DI3 sing 109 n n 
C9 H91 DI3 sing 110 n n 
C9 H92 DI3 sing 111 n n 
C10 C11 DI3 sing 112 n n 
C10 H101 DI3 sing 113 n n 
C10 H102 DI3 sing 114 n n 
C11 N3 DI3 sing 115 n n 
C11 H111 DI3 sing 116 n n 
C11 H112 DI3 sing 117 n n 
C12 C14 DI3 sing 118 n n 
C12 N3 DI3 sing 119 n n 
C12 O3 DI3 doub 120 n n 
C13 C14 DI3 sing 121 n n 
C13 C21 DI3 sing 122 n n 
C13 H131 DI3 sing 123 n n 
C13 H132 DI3 sing 124 n n 
C14 N4 DI3 sing 125 n n 
C14 H14 DI3 sing 126 n n 
C15 C16 DI3 sing 127 n n 
C15 N4 DI3 sing 128 n n 
C15 O4 DI3 doub 129 n n 
C16 H161 DI3 sing 130 n n 
C16 H162 DI3 sing 131 n n 
C16 H163 DI3 sing 132 n n 
C17 C18 DI3 doub 133 n y 
C17 C22 DI3 sing 134 n y 
C17 H17 DI3 sing 135 n n 
C18 C19 DI3 sing 136 n y 
C18 H18 DI3 sing 137 n n 
C19 C20 DI3 doub 138 n y 
C19 H19 DI3 sing 139 n n 
C20 C21 DI3 sing 140 n y 
C20 H20 DI3 sing 141 n n 
C21 C22 DI3 doub 142 n y 
C22 H22 DI3 sing 143 n n 
N HN DI3 sing 144 n n 
N1 HN1 DI3 sing 145 n n 
N2 HN21 DI3 sing 146 n n 
N2 HN22 DI3 sing 147 n n 
N4 HN4 DI3 sing 148 n n 
O HO DI3 sing 149 n n 
O1 HO1 DI3 sing 150 n n 
#
_atom_sites.entry_id                     1LHE 
_atom_sites.fract_transf_matrix[1][1]    0.014124 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002567 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013812 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 DI3 H 1 400 400 DI3 DI3 . 
E 5 HOH L 1 503 503 HOH HOH . 
E 5 HOH L 2 515 515 HOH HOH . 
E 5 HOH L 3 541 541 HOH HOH . 
E 5 HOH L 4 545 545 HOH HOH . 
E 5 HOH L 5 546 546 HOH HOH . 
E 5 HOH L 6 560 560 HOH HOH . 
E 5 HOH L 7 591 591 HOH HOH . 
E 5 HOH L 8 593 593 HOH HOH . 
E 5 HOH L 9 595 595 HOH HOH . 
E 5 HOH L 10 602 602 HOH HOH . 
E 5 HOH L 11 636 636 HOH HOH . 
E 5 HOH L 12 641 641 HOH HOH . 
F 5 HOH H 1 501 501 HOH HOH . 
F 5 HOH H 2 502 502 HOH HOH . 
F 5 HOH H 3 504 504 HOH HOH . 
F 5 HOH H 4 505 505 HOH HOH . 
F 5 HOH H 5 506 506 HOH HOH . 
F 5 HOH H 6 507 507 HOH HOH . 
F 5 HOH H 7 508 508 HOH HOH . 
F 5 HOH H 8 511 511 HOH HOH . 
F 5 HOH H 9 513 513 HOH HOH . 
F 5 HOH H 10 517 517 HOH HOH . 
F 5 HOH H 11 519 519 HOH HOH . 
F 5 HOH H 12 521 521 HOH HOH . 
F 5 HOH H 13 522 522 HOH HOH . 
F 5 HOH H 14 524 524 HOH HOH . 
F 5 HOH H 15 529 529 HOH HOH . 
F 5 HOH H 16 532 532 HOH HOH . 
F 5 HOH H 17 534 534 HOH HOH . 
F 5 HOH H 18 535 535 HOH HOH . 
F 5 HOH H 19 537 537 HOH HOH . 
F 5 HOH H 20 539 539 HOH HOH . 
F 5 HOH H 21 542 542 HOH HOH . 
F 5 HOH H 22 543 543 HOH HOH . 
F 5 HOH H 23 544 544 HOH HOH . 
F 5 HOH H 24 550 550 HOH HOH . 
F 5 HOH H 25 551 551 HOH HOH . 
F 5 HOH H 26 552 552 HOH HOH . 
F 5 HOH H 27 553 553 HOH HOH . 
F 5 HOH H 28 554 554 HOH HOH . 
F 5 HOH H 29 555 555 HOH HOH . 
F 5 HOH H 30 556 556 HOH HOH . 
F 5 HOH H 31 557 557 HOH HOH . 
F 5 HOH H 32 558 558 HOH HOH . 
F 5 HOH H 33 559 559 HOH HOH . 
F 5 HOH H 34 561 561 HOH HOH . 
F 5 HOH H 35 562 562 HOH HOH . 
F 5 HOH H 36 563 563 HOH HOH . 
F 5 HOH H 37 564 564 HOH HOH . 
F 5 HOH H 38 565 565 HOH HOH . 
F 5 HOH H 39 567 567 HOH HOH . 
F 5 HOH H 40 568 568 HOH HOH . 
F 5 HOH H 41 570 570 HOH HOH . 
F 5 HOH H 42 571 571 HOH HOH . 
F 5 HOH H 43 572 572 HOH HOH . 
F 5 HOH H 44 574 574 HOH HOH . 
F 5 HOH H 45 575 575 HOH HOH . 
F 5 HOH H 46 576 576 HOH HOH . 
F 5 HOH H 47 577 577 HOH HOH . 
F 5 HOH H 48 578 578 HOH HOH . 
F 5 HOH H 49 579 579 HOH HOH . 
F 5 HOH H 50 580 580 HOH HOH . 
F 5 HOH H 51 581 581 HOH HOH . 
F 5 HOH H 52 582 582 HOH HOH . 
F 5 HOH H 53 583 583 HOH HOH . 
F 5 HOH H 54 584 584 HOH HOH . 
F 5 HOH H 55 586 586 HOH HOH . 
F 5 HOH H 56 587 587 HOH HOH . 
F 5 HOH H 57 588 588 HOH HOH . 
F 5 HOH H 58 589 589 HOH HOH . 
F 5 HOH H 59 590 590 HOH HOH . 
F 5 HOH H 60 594 594 HOH HOH . 
F 5 HOH H 61 598 598 HOH HOH . 
F 5 HOH H 62 599 599 HOH HOH . 
F 5 HOH H 63 600 600 HOH HOH . 
F 5 HOH H 64 601 601 HOH HOH . 
F 5 HOH H 65 603 603 HOH HOH . 
F 5 HOH H 66 604 604 HOH HOH . 
F 5 HOH H 67 605 605 HOH HOH . 
F 5 HOH H 68 609 609 HOH HOH . 
F 5 HOH H 69 610 610 HOH HOH . 
F 5 HOH H 70 611 611 HOH HOH . 
F 5 HOH H 71 613 613 HOH HOH . 
F 5 HOH H 72 614 614 HOH HOH . 
F 5 HOH H 73 615 615 HOH HOH . 
F 5 HOH H 74 616 616 HOH HOH . 
F 5 HOH H 75 617 617 HOH HOH . 
F 5 HOH H 76 619 619 HOH HOH . 
F 5 HOH H 77 620 620 HOH HOH . 
F 5 HOH H 78 621 621 HOH HOH . 
F 5 HOH H 79 622 622 HOH HOH . 
F 5 HOH H 80 623 623 HOH HOH . 
F 5 HOH H 81 624 624 HOH HOH . 
F 5 HOH H 82 625 625 HOH HOH . 
F 5 HOH H 83 626 626 HOH HOH . 
F 5 HOH H 84 628 628 HOH HOH . 
F 5 HOH H 85 629 629 HOH HOH . 
F 5 HOH H 86 630 630 HOH HOH . 
F 5 HOH H 87 631 631 HOH HOH . 
F 5 HOH H 88 634 634 HOH HOH . 
F 5 HOH H 89 635 635 HOH HOH . 
F 5 HOH H 90 637 637 HOH HOH . 
F 5 HOH H 91 638 638 HOH HOH . 
F 5 HOH H 92 639 639 HOH HOH . 
F 5 HOH H 93 640 640 HOH HOH . 
F 5 HOH H 94 642 642 HOH HOH . 
F 5 HOH H 95 643 643 HOH HOH . 
F 5 HOH H 96 644 644 HOH HOH . 
F 5 HOH H 97 645 645 HOH HOH . 
F 5 HOH H 98 646 646 HOH HOH . 
F 5 HOH H 99 647 647 HOH HOH . 
F 5 HOH H 100 649 649 HOH HOH . 
F 5 HOH H 101 650 650 HOH HOH . 
F 5 HOH H 102 651 651 HOH HOH . 
G 5 HOH I 1 510 510 HOH HOH . 
G 5 HOH I 2 648 648 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B1 DI3 . . . D 4 15.227 -10.739 18.42 1 24.83 ? B1 DI3 400 H 1 
HETATM 2 C C DI3 . . . D 4 15.02 -11.802 19.55 1 25.23 ? C DI3 400 H 1 
HETATM 3 C C2 DI3 . . . D 4 13.651 -11.649 20.169 1 25.15 ? C2 DI3 400 H 1 
HETATM 4 C C3 DI3 . . . D 4 13.403 -10.76 21.373 1 25.28 ? C3 DI3 400 H 1 
HETATM 5 C C4 DI3 . . . D 4 11.989 -11.026 21.985 1 25.07 ? C4 DI3 400 H 1 
HETATM 6 C C5 DI3 . . . D 4 12.106 -12.062 23.144 1 24.85 ? C5 DI3 400 H 1 
HETATM 7 C C6 DI3 . . . D 4 11.057 -11.897 24.226 1 24.81 ? C6 DI3 400 H 1 
HETATM 8 C C7 DI3 . . . D 4 18.369 -13.015 21.207 1 25.81 ? C7 DI3 400 H 1 
HETATM 9 C C8 DI3 . . . D 4 17.06 -12.931 20.329 1 25.61 ? C8 DI3 400 H 1 
HETATM 10 C C9 DI3 . . . D 4 19.574 -12.986 20.21 1 26.11 ? C9 DI3 400 H 1 
HETATM 11 C C10 DI3 . . . D 4 20.351 -14.275 20.342 1 26.03 ? C10 DI3 400 H 1 
HETATM 12 C C11 DI3 . . . D 4 19.645 -15.148 21.359 1 25.74 ? C11 DI3 400 H 1 
HETATM 13 C C12 DI3 . . . D 4 17.688 -14.761 22.869 1 25.84 ? C12 DI3 400 H 1 
HETATM 14 C C13 DI3 . . . D 4 18.408 -16.15 24.975 1 26.4 ? C13 DI3 400 H 1 
HETATM 15 C C14 DI3 . . . D 4 17.797 -16.176 23.546 1 26.28 ? C14 DI3 400 H 1 
HETATM 16 C C15 DI3 . . . D 4 16.008 -17.805 22.92 1 27.14 ? C15 DI3 400 H 1 
HETATM 17 C C16 DI3 . . . D 4 14.528 -18.184 23.017 1 26.76 ? C16 DI3 400 H 1 
HETATM 18 C C17 DI3 . . . D 4 22.177 -15.342 24.813 1 26.61 ? C17 DI3 400 H 1 
HETATM 19 C C18 DI3 . . . D 4 22.257 -14.21 25.602 1 26.67 ? C18 DI3 400 H 1 
HETATM 20 C C19 DI3 . . . D 4 21.1 -13.684 26.189 1 26.66 ? C19 DI3 400 H 1 
HETATM 21 C C20 DI3 . . . D 4 19.864 -14.296 25.968 1 26.5 ? C20 DI3 400 H 1 
HETATM 22 C C21 DI3 . . . D 4 19.767 -15.448 25.189 1 26.55 ? C21 DI3 400 H 1 
HETATM 23 C C22 DI3 . . . D 4 20.944 -15.966 24.605 1 26.65 ? C22 DI3 400 H 1 
HETATM 24 N N DI3 . . . D 4 16.218 -11.874 20.452 1 25.01 ? N DI3 400 H 1 
HETATM 25 N N1 DI3 . . . D 4 10.356 -12.883 24.578 1 25.17 ? N1 DI3 400 H 1 
HETATM 26 N N2 DI3 . . . D 4 10.839 -10.652 24.859 1 24.72 ? N2 DI3 400 H 1 
HETATM 27 N N3 DI3 . . . D 4 18.544 -14.347 21.889 1 25.72 ? N3 DI3 400 H 1 
HETATM 28 N N4 DI3 . . . D 4 16.399 -16.699 23.579 1 26.72 ? N4 DI3 400 H 1 
HETATM 29 O O DI3 . . . D 4 13.981 -10.621 17.672 1 24.93 ? O DI3 400 H 1 
HETATM 30 O O1 DI3 . . . D 4 16.296 -11.027 17.522 1 24.51 ? O1 DI3 400 H 1 
HETATM 31 O O2 DI3 . . . D 4 16.875 -13.874 19.537 1 25.77 ? O2 DI3 400 H 1 
HETATM 32 O O3 DI3 . . . D 4 16.752 -14.042 23.241 1 25.55 ? O3 DI3 400 H 1 
HETATM 33 O O4 DI3 . . . D 4 16.798 -18.523 22.277 1 27.41 ? O4 DI3 400 H 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#