data_1LHG # _model_server_result.job_id HLarxfrDtgnCyJ-kiuo6gA _model_server_result.datetime_utc '2024-10-24 04:20:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1LHG # _exptl.entry_id 1LHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.295 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description AC-(D)PHE-PRO-BOROHOMOORNITHINE-OH _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.1 _cell.angle_gamma 90 _cell.entry_id 1LHG _cell.length_a 70.4 _cell.length_b 72.2 _cell.length_c 72.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B OG SER 205 H SER 195 1_555 D B1 DI5 . H DI5 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? # _chem_comp.formula 'C20 H31 B N4 O5' _chem_comp.formula_weight 418.295 _chem_comp.id DI5 _chem_comp.mon_nstd_flag . _chem_comp.name AC-(D)PHE-PRO-BOROHOMOORNITHINE-OH _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag B1 C DI5 sing 83 n n B1 O DI5 sing 84 n n B1 O1 DI5 sing 85 n n C C2 DI5 sing 86 n n C N DI5 sing 87 n n C H DI5 sing 88 n n C2 C3 DI5 sing 89 n n C2 H21 DI5 sing 90 n n C2 H22 DI5 sing 91 n n C3 C4 DI5 sing 92 n n C3 H31 DI5 sing 93 n n C3 H32 DI5 sing 94 n n C4 N1 DI5 sing 95 n n C4 H41 DI5 sing 96 n n C4 H42 DI5 sing 97 n n C6 C5 DI5 sing 98 n n C6 N DI5 sing 99 n n C6 O2 DI5 doub 100 n n C5 C7 DI5 sing 101 n n C5 N2 DI5 sing 102 n n C5 H5 DI5 sing 103 n n C7 C8 DI5 sing 104 n n C7 H71 DI5 sing 105 n n C7 H72 DI5 sing 106 n n C8 C9 DI5 sing 107 n n C8 H81 DI5 sing 108 n n C8 H82 DI5 sing 109 n n C9 N2 DI5 sing 110 n n C9 H91 DI5 sing 111 n n C9 H92 DI5 sing 112 n n C10 C12 DI5 sing 113 n n C10 N2 DI5 sing 114 n n C10 O3 DI5 doub 115 n n C11 C12 DI5 sing 116 n n C11 C19 DI5 sing 117 n n C11 H111 DI5 sing 118 n n C11 H112 DI5 sing 119 n n C12 N3 DI5 sing 120 n n C12 H12 DI5 sing 121 n n C13 C14 DI5 sing 122 n n C13 N3 DI5 sing 123 n n C13 O4 DI5 doub 124 n n C14 H141 DI5 sing 125 n n C14 H142 DI5 sing 126 n n C14 H143 DI5 sing 127 n n C15 C16 DI5 doub 128 n y C15 C20 DI5 sing 129 n y C15 H15 DI5 sing 130 n n C16 C17 DI5 sing 131 n y C16 H16 DI5 sing 132 n n C17 C18 DI5 doub 133 n y C17 H17 DI5 sing 134 n n C18 C19 DI5 sing 135 n y C18 H18 DI5 sing 136 n n C19 C20 DI5 doub 137 n y C20 H20 DI5 sing 138 n n N HN DI5 sing 139 n n N1 HN11 DI5 sing 140 n n N1 HN12 DI5 sing 141 n n N3 HN3 DI5 sing 142 n n O HO DI5 sing 143 n n O1 HO1 DI5 sing 144 n n # _atom_sites.entry_id 1LHG _atom_sites.fract_transf_matrix[1][1] 0.014205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DI5 H 1 400 400 DI5 DI5 . E 5 HOH L 1 503 503 HOH HOH . E 5 HOH L 2 515 515 HOH HOH . E 5 HOH L 3 555 555 HOH HOH . E 5 HOH L 4 560 560 HOH HOH . E 5 HOH L 5 595 595 HOH HOH . E 5 HOH L 6 596 596 HOH HOH . E 5 HOH L 7 602 602 HOH HOH . E 5 HOH L 8 636 636 HOH HOH . E 5 HOH L 9 643 643 HOH HOH . E 5 HOH L 10 653 653 HOH HOH . E 5 HOH L 11 657 657 HOH HOH . F 5 HOH H 1 501 501 HOH HOH . F 5 HOH H 2 502 502 HOH HOH . F 5 HOH H 3 504 504 HOH HOH . F 5 HOH H 4 505 505 HOH HOH . F 5 HOH H 5 506 506 HOH HOH . F 5 HOH H 6 507 507 HOH HOH . F 5 HOH H 7 508 508 HOH HOH . F 5 HOH H 8 510 510 HOH HOH . F 5 HOH H 9 511 511 HOH HOH . F 5 HOH H 10 512 512 HOH HOH . F 5 HOH H 11 513 513 HOH HOH . F 5 HOH H 12 516 516 HOH HOH . F 5 HOH H 13 519 519 HOH HOH . F 5 HOH H 14 522 522 HOH HOH . F 5 HOH H 15 523 523 HOH HOH . F 5 HOH H 16 527 527 HOH HOH . F 5 HOH H 17 529 529 HOH HOH . F 5 HOH H 18 532 532 HOH HOH . F 5 HOH H 19 533 533 HOH HOH . F 5 HOH H 20 534 534 HOH HOH . F 5 HOH H 21 535 535 HOH HOH . F 5 HOH H 22 537 537 HOH HOH . F 5 HOH H 23 538 538 HOH HOH . F 5 HOH H 24 541 541 HOH HOH . F 5 HOH H 25 542 542 HOH HOH . F 5 HOH H 26 544 544 HOH HOH . F 5 HOH H 27 548 548 HOH HOH . F 5 HOH H 28 550 550 HOH HOH . F 5 HOH H 29 551 551 HOH HOH . F 5 HOH H 30 552 552 HOH HOH . F 5 HOH H 31 553 553 HOH HOH . F 5 HOH H 32 554 554 HOH HOH . F 5 HOH H 33 556 556 HOH HOH . F 5 HOH H 34 557 557 HOH HOH . F 5 HOH H 35 558 558 HOH HOH . F 5 HOH H 36 559 559 HOH HOH . F 5 HOH H 37 562 562 HOH HOH . F 5 HOH H 38 563 563 HOH HOH . F 5 HOH H 39 564 564 HOH HOH . F 5 HOH H 40 567 567 HOH HOH . F 5 HOH H 41 568 568 HOH HOH . F 5 HOH H 42 569 569 HOH HOH . F 5 HOH H 43 570 570 HOH HOH . F 5 HOH H 44 571 571 HOH HOH . F 5 HOH H 45 572 572 HOH HOH . F 5 HOH H 46 573 573 HOH HOH . F 5 HOH H 47 574 574 HOH HOH . F 5 HOH H 48 575 575 HOH HOH . F 5 HOH H 49 577 577 HOH HOH . F 5 HOH H 50 578 578 HOH HOH . F 5 HOH H 51 579 579 HOH HOH . F 5 HOH H 52 580 580 HOH HOH . F 5 HOH H 53 581 581 HOH HOH . F 5 HOH H 54 582 582 HOH HOH . F 5 HOH H 55 583 583 HOH HOH . F 5 HOH H 56 584 584 HOH HOH . F 5 HOH H 57 585 585 HOH HOH . F 5 HOH H 58 586 586 HOH HOH . F 5 HOH H 59 587 587 HOH HOH . F 5 HOH H 60 588 588 HOH HOH . F 5 HOH H 61 589 589 HOH HOH . F 5 HOH H 62 590 590 HOH HOH . F 5 HOH H 63 594 594 HOH HOH . F 5 HOH H 64 598 598 HOH HOH . F 5 HOH H 65 599 599 HOH HOH . F 5 HOH H 66 600 600 HOH HOH . F 5 HOH H 67 601 601 HOH HOH . F 5 HOH H 68 603 603 HOH HOH . F 5 HOH H 69 604 604 HOH HOH . F 5 HOH H 70 605 605 HOH HOH . F 5 HOH H 71 609 609 HOH HOH . F 5 HOH H 72 610 610 HOH HOH . F 5 HOH H 73 611 611 HOH HOH . F 5 HOH H 74 613 613 HOH HOH . F 5 HOH H 75 614 614 HOH HOH . F 5 HOH H 76 615 615 HOH HOH . F 5 HOH H 77 616 616 HOH HOH . F 5 HOH H 78 617 617 HOH HOH . F 5 HOH H 79 619 619 HOH HOH . F 5 HOH H 80 620 620 HOH HOH . F 5 HOH H 81 621 621 HOH HOH . F 5 HOH H 82 622 622 HOH HOH . F 5 HOH H 83 623 623 HOH HOH . F 5 HOH H 84 624 624 HOH HOH . F 5 HOH H 85 625 625 HOH HOH . F 5 HOH H 86 627 627 HOH HOH . F 5 HOH H 87 628 628 HOH HOH . F 5 HOH H 88 629 629 HOH HOH . F 5 HOH H 89 630 630 HOH HOH . F 5 HOH H 90 631 631 HOH HOH . F 5 HOH H 91 634 634 HOH HOH . F 5 HOH H 92 635 635 HOH HOH . F 5 HOH H 93 637 637 HOH HOH . F 5 HOH H 94 638 638 HOH HOH . F 5 HOH H 95 640 640 HOH HOH . F 5 HOH H 96 641 641 HOH HOH . F 5 HOH H 97 642 642 HOH HOH . F 5 HOH H 98 644 644 HOH HOH . F 5 HOH H 99 645 645 HOH HOH . F 5 HOH H 100 646 646 HOH HOH . F 5 HOH H 101 647 647 HOH HOH . F 5 HOH H 102 648 648 HOH HOH . F 5 HOH H 103 649 649 HOH HOH . F 5 HOH H 104 651 651 HOH HOH . F 5 HOH H 105 652 652 HOH HOH . F 5 HOH H 106 654 654 HOH HOH . F 5 HOH H 107 655 655 HOH HOH . F 5 HOH H 108 658 658 HOH HOH . F 5 HOH H 109 659 659 HOH HOH . F 5 HOH H 110 661 661 HOH HOH . F 5 HOH H 111 662 662 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B1 DI5 . . . D 4 14.888 -10.479 18.717 1 24.83 ? B1 DI5 400 H 1 HETATM 2 C C DI5 . . . D 4 14.62 -11.489 19.912 1 25.35 ? C DI5 400 H 1 HETATM 3 C C2 DI5 . . . D 4 13.629 -10.777 20.857 1 25.47 ? C2 DI5 400 H 1 HETATM 4 C C3 DI5 . . . D 4 13.203 -11.453 22.152 1 25.74 ? C3 DI5 400 H 1 HETATM 5 C C4 DI5 . . . D 4 12.263 -12.645 21.984 1 25.96 ? C4 DI5 400 H 1 HETATM 6 C C6 DI5 . . . D 4 16.533 -12.983 20.601 1 25.83 ? C6 DI5 400 H 1 HETATM 7 C C5 DI5 . . . D 4 17.916 -13.083 21.325 1 25.88 ? C5 DI5 400 H 1 HETATM 8 C C7 DI5 . . . D 4 19.065 -12.995 20.291 1 25.88 ? C7 DI5 400 H 1 HETATM 9 C C8 DI5 . . . D 4 19.767 -14.358 20.256 1 25.88 ? C8 DI5 400 H 1 HETATM 10 C C9 DI5 . . . D 4 19.366 -15.082 21.534 1 25.89 ? C9 DI5 400 H 1 HETATM 11 C C10 DI5 . . . D 4 17.393 -14.808 23.05 1 26 ? C10 DI5 400 H 1 HETATM 12 C C11 DI5 . . . D 4 18.318 -15.848 25.235 1 26.74 ? C11 DI5 400 H 1 HETATM 13 C C12 DI5 . . . D 4 17.665 -16.164 23.828 1 26.32 ? C12 DI5 400 H 1 HETATM 14 C C13 DI5 . . . D 4 15.855 -17.769 23.201 1 26.69 ? C13 DI5 400 H 1 HETATM 15 C C14 DI5 . . . D 4 14.449 -18.314 23.451 1 26.27 ? C14 DI5 400 H 1 HETATM 16 C C15 DI5 . . . D 4 22.124 -15.625 24.547 1 27.03 ? C15 DI5 400 H 1 HETATM 17 C C16 DI5 . . . D 4 22.488 -14.572 25.372 1 27.11 ? C16 DI5 400 H 1 HETATM 18 C C17 DI5 . . . D 4 21.522 -13.92 26.155 1 27.09 ? C17 DI5 400 H 1 HETATM 19 C C18 DI5 . . . D 4 20.189 -14.323 26.087 1 27.05 ? C18 DI5 400 H 1 HETATM 20 C C19 DI5 . . . D 4 19.802 -15.389 25.257 1 27.04 ? C19 DI5 400 H 1 HETATM 21 C C20 DI5 . . . D 4 20.796 -16.043 24.494 1 27.12 ? C20 DI5 400 H 1 HETATM 22 N N DI5 . . . D 4 15.91 -11.792 20.619 1 25.55 ? N DI5 400 H 1 HETATM 23 N N1 DI5 . . . D 4 11.206 -12.596 23.031 1 26.18 ? N1 DI5 400 H 1 HETATM 24 N N2 DI5 . . . D 4 18.188 -14.369 22.047 1 25.89 ? N2 DI5 400 H 1 HETATM 25 N N3 DI5 . . . D 4 16.327 -16.794 24.012 1 26.43 ? N3 DI5 400 H 1 HETATM 26 O O DI5 . . . D 4 13.695 -10.282 17.926 1 24.87 ? O DI5 400 H 1 HETATM 27 O O1 DI5 . . . D 4 15.916 -10.909 17.812 1 24.31 ? O1 DI5 400 H 1 HETATM 28 O O2 DI5 . . . D 4 16.063 -13.978 20.048 1 25.99 ? O2 DI5 400 H 1 HETATM 29 O O3 DI5 . . . D 4 16.423 -14.144 23.419 1 25.8 ? O3 DI5 400 H 1 HETATM 30 O O4 DI5 . . . D 4 16.518 -18.258 22.273 1 27.01 ? O4 DI5 400 H 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #