data_1LHR # _model_server_result.job_id 1fqIEjYdoAqwtaFxxfCKww _model_server_result.datetime_utc '2024-10-19 03:46:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lhr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 1LHR # _exptl.entry_id 1LHR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LHR _cell.length_a 59 _cell.length_b 93.8 _cell.length_c 128.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LHR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 113 A ASP 113 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? metalc ? metalc2 A O THR 148 A THR 148 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc3 A OE1 GLU 153 A GLU 153 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.518 ? metalc ? metalc4 A OG1 THR 186 A THR 186 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc5 E O2G ATP . A ATP 401 1_555 C ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc6 E O1B ATP . A ATP 401 1_555 C ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 E O1B ATP . A ATP 401 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc8 C ZN ZN . A ZN 403 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.365 ? metalc ? metalc9 D K K . A K 405 1_555 I O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.422 ? metalc ? metalc10 B OD1 ASP 113 B ASP 113 1_555 G K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc11 B O THR 148 B THR 148 1_555 G K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc12 B OG1 THR 186 B THR 186 1_555 G K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc13 H O1B ATP . B ATP 402 1_555 F ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc14 H O2G ATP . B ATP 402 1_555 F ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc15 H O1B ATP . B ATP 402 1_555 G K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc16 F ZN ZN . B ZN 404 1_555 G K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.449 ? metalc ? metalc17 G K K . B K 406 1_555 J O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1LHR _atom_sites.fract_transf_matrix[1][1] 0.016949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 403 403 ZN ZN . D 3 K A 1 405 405 K K . E 4 ATP A 1 401 401 ATP ATP . F 2 ZN B 1 404 404 ZN ZN . G 3 K B 1 406 406 K K . H 4 ATP B 1 402 402 ATP ATP . I 5 HOH A 1 406 1 HOH HOH . I 5 HOH A 2 407 3 HOH HOH . I 5 HOH A 3 408 6 HOH HOH . I 5 HOH A 4 409 9 HOH HOH . I 5 HOH A 5 410 10 HOH HOH . I 5 HOH A 6 411 12 HOH HOH . I 5 HOH A 7 412 15 HOH HOH . I 5 HOH A 8 413 16 HOH HOH . I 5 HOH A 9 414 17 HOH HOH . I 5 HOH A 10 415 18 HOH HOH . I 5 HOH A 11 416 22 HOH HOH . I 5 HOH A 12 417 26 HOH HOH . I 5 HOH A 13 418 29 HOH HOH . I 5 HOH A 14 419 30 HOH HOH . I 5 HOH A 15 420 31 HOH HOH . I 5 HOH A 16 421 32 HOH HOH . I 5 HOH A 17 422 33 HOH HOH . I 5 HOH A 18 423 34 HOH HOH . I 5 HOH A 19 424 35 HOH HOH . I 5 HOH A 20 425 37 HOH HOH . I 5 HOH A 21 426 39 HOH HOH . I 5 HOH A 22 427 40 HOH HOH . I 5 HOH A 23 428 41 HOH HOH . I 5 HOH A 24 429 43 HOH HOH . I 5 HOH A 25 430 44 HOH HOH . I 5 HOH A 26 431 45 HOH HOH . I 5 HOH A 27 432 47 HOH HOH . I 5 HOH A 28 433 51 HOH HOH . I 5 HOH A 29 434 53 HOH HOH . I 5 HOH A 30 435 54 HOH HOH . I 5 HOH A 31 436 56 HOH HOH . I 5 HOH A 32 437 58 HOH HOH . I 5 HOH A 33 438 59 HOH HOH . I 5 HOH A 34 439 60 HOH HOH . I 5 HOH A 35 440 62 HOH HOH . I 5 HOH A 36 441 64 HOH HOH . I 5 HOH A 37 442 66 HOH HOH . I 5 HOH A 38 443 69 HOH HOH . I 5 HOH A 39 444 70 HOH HOH . I 5 HOH A 40 445 71 HOH HOH . I 5 HOH A 41 446 73 HOH HOH . I 5 HOH A 42 447 76 HOH HOH . I 5 HOH A 43 448 78 HOH HOH . I 5 HOH A 44 449 79 HOH HOH . I 5 HOH A 45 450 83 HOH HOH . I 5 HOH A 46 451 84 HOH HOH . I 5 HOH A 47 452 85 HOH HOH . I 5 HOH A 48 453 86 HOH HOH . I 5 HOH A 49 454 87 HOH HOH . I 5 HOH A 50 455 89 HOH HOH . I 5 HOH A 51 456 91 HOH HOH . I 5 HOH A 52 457 92 HOH HOH . I 5 HOH A 53 458 93 HOH HOH . I 5 HOH A 54 459 97 HOH HOH . I 5 HOH A 55 460 98 HOH HOH . I 5 HOH A 56 461 105 HOH HOH . I 5 HOH A 57 462 107 HOH HOH . J 5 HOH B 1 407 2 HOH HOH . J 5 HOH B 2 408 4 HOH HOH . J 5 HOH B 3 409 5 HOH HOH . J 5 HOH B 4 410 7 HOH HOH . J 5 HOH B 5 411 8 HOH HOH . J 5 HOH B 6 412 11 HOH HOH . J 5 HOH B 7 413 13 HOH HOH . J 5 HOH B 8 414 14 HOH HOH . J 5 HOH B 9 415 19 HOH HOH . J 5 HOH B 10 416 20 HOH HOH . J 5 HOH B 11 417 21 HOH HOH . J 5 HOH B 12 418 23 HOH HOH . J 5 HOH B 13 419 24 HOH HOH . J 5 HOH B 14 420 25 HOH HOH . J 5 HOH B 15 421 27 HOH HOH . J 5 HOH B 16 422 28 HOH HOH . J 5 HOH B 17 423 36 HOH HOH . J 5 HOH B 18 424 38 HOH HOH . J 5 HOH B 19 425 42 HOH HOH . J 5 HOH B 20 426 46 HOH HOH . J 5 HOH B 21 427 48 HOH HOH . J 5 HOH B 22 428 49 HOH HOH . J 5 HOH B 23 429 50 HOH HOH . J 5 HOH B 24 430 52 HOH HOH . J 5 HOH B 25 431 55 HOH HOH . J 5 HOH B 26 432 57 HOH HOH . J 5 HOH B 27 433 61 HOH HOH . J 5 HOH B 28 434 63 HOH HOH . J 5 HOH B 29 435 65 HOH HOH . J 5 HOH B 30 436 67 HOH HOH . J 5 HOH B 31 437 68 HOH HOH . J 5 HOH B 32 438 72 HOH HOH . J 5 HOH B 33 439 74 HOH HOH . J 5 HOH B 34 440 75 HOH HOH . J 5 HOH B 35 441 77 HOH HOH . J 5 HOH B 36 442 80 HOH HOH . J 5 HOH B 37 443 81 HOH HOH . J 5 HOH B 38 444 82 HOH HOH . J 5 HOH B 39 445 88 HOH HOH . J 5 HOH B 40 446 90 HOH HOH . J 5 HOH B 41 447 94 HOH HOH . J 5 HOH B 42 448 95 HOH HOH . J 5 HOH B 43 449 96 HOH HOH . J 5 HOH B 44 450 99 HOH HOH . J 5 HOH B 45 451 100 HOH HOH . J 5 HOH B 46 452 101 HOH HOH . J 5 HOH B 47 453 102 HOH HOH . J 5 HOH B 48 454 103 HOH HOH . J 5 HOH B 49 455 104 HOH HOH . J 5 HOH B 50 456 106 HOH HOH . J 5 HOH B 51 457 108 HOH HOH . J 5 HOH B 52 458 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 4 47.206 25.705 37.739 1 54.24 ? PG ATP 402 B 1 HETATM 2 O O1G ATP . . . H 4 48.181 26.019 36.664 1 54.7 ? O1G ATP 402 B 1 HETATM 3 O O2G ATP . . . H 4 45.903 25.205 37.285 1 54.42 ? O2G ATP 402 B 1 HETATM 4 O O3G ATP . . . H 4 47.845 24.842 38.797 1 54.49 ? O3G ATP 402 B 1 HETATM 5 P PB ATP . . . H 4 46.469 28.596 37.88 1 50.54 ? PB ATP 402 B 1 HETATM 6 O O1B ATP . . . H 4 45.017 28.649 37.579 1 48.32 ? O1B ATP 402 B 1 HETATM 7 O O2B ATP . . . H 4 47.429 29.004 36.843 1 47.05 ? O2B ATP 402 B 1 HETATM 8 O O3B ATP . . . H 4 46.809 27.085 38.447 1 51.57 ? O3B ATP 402 B 1 HETATM 9 P PA ATP . . . H 4 47.272 30.669 39.689 1 49.14 ? PA ATP 402 B 1 HETATM 10 O O1A ATP . . . H 4 48.718 30.622 39.413 1 48.93 ? O1A ATP 402 B 1 HETATM 11 O O2A ATP . . . H 4 46.463 31.817 39.186 1 50.93 ? O2A ATP 402 B 1 HETATM 12 O O3A ATP . . . H 4 46.676 29.312 39.21 1 48.45 ? O3A ATP 402 B 1 HETATM 13 O O5' ATP . . . H 4 47.064 30.485 41.216 1 47.32 ? O5' ATP 402 B 1 HETATM 14 C C5' ATP . . . H 4 45.813 30.167 41.828 1 41.6 ? C5' ATP 402 B 1 HETATM 15 C C4' ATP . . . H 4 45.833 30.715 43.22 1 39.51 ? C4' ATP 402 B 1 HETATM 16 O O4' ATP . . . H 4 46.984 30.125 43.873 1 37.3 ? O4' ATP 402 B 1 HETATM 17 C C3' ATP . . . H 4 45.998 32.22 43.298 1 37.4 ? C3' ATP 402 B 1 HETATM 18 O O3' ATP . . . H 4 45.124 32.67 44.33 1 42.71 ? O3' ATP 402 B 1 HETATM 19 C C2' ATP . . . H 4 47.427 32.393 43.641 1 36.78 ? C2' ATP 402 B 1 HETATM 20 O O2' ATP . . . H 4 47.622 33.491 44.507 1 40.08 ? O2' ATP 402 B 1 HETATM 21 C C1' ATP . . . H 4 47.871 31.123 44.364 1 35.1 ? C1' ATP 402 B 1 HETATM 22 N N9 ATP . . . H 4 49.272 30.747 44.038 1 33.33 ? N9 ATP 402 B 1 HETATM 23 C C8 ATP . . . H 4 49.747 29.773 43.183 1 32.68 ? C8 ATP 402 B 1 HETATM 24 N N7 ATP . . . H 4 51.042 29.684 43.113 1 31.8 ? N7 ATP 402 B 1 HETATM 25 C C5 ATP . . . H 4 51.453 30.676 43.99 1 32.73 ? C5 ATP 402 B 1 HETATM 26 C C6 ATP . . . H 4 52.738 31.129 44.399 1 31.99 ? C6 ATP 402 B 1 HETATM 27 N N6 ATP . . . H 4 53.842 30.575 43.92 1 31.99 ? N6 ATP 402 B 1 HETATM 28 N N1 ATP . . . H 4 52.819 32.146 45.297 1 31.38 ? N1 ATP 402 B 1 HETATM 29 C C2 ATP . . . H 4 51.704 32.696 45.772 1 30.58 ? C2 ATP 402 B 1 HETATM 30 N N3 ATP . . . H 4 50.437 32.369 45.475 1 31.56 ? N3 ATP 402 B 1 HETATM 31 C C4 ATP . . . H 4 50.387 31.331 44.56 1 32.8 ? C4 ATP 402 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #