data_1LHV
#
_model_server_result.job_id            IMhrVBAE2NwgFavq_f3ihA 
_model_server_result.datetime_utc      '2024-11-22 02:08:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lhv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    1LHV 
#
_exptl.entry_id    1LHV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              312.446 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-BETA-HYDROXYGON-4-EN-3-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1LHV 
_cell.length_a            103.98 
_cell.length_b            103.98 
_cell.length_c            83.93 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LHV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 83.93 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 164 A CYS 164 1_555 A SG CYS 188 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OD2 ASP 50 A ASP 50 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc2 A OD1 ASP 50 A ASP 50 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc3 A O GLU 52 A GLU 52 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc4 A OD2 ASP 65 A ASP 65 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 A NE2 HIS 83 A HIS 83 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 A NE2 HIS 136 A HIS 136 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc7 A O ALA 160 A ALA 160 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc8 B CA CA . A CA 401 1_555 F O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc9 B CA CA . A CA 401 1_555 F O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc10 C ZN ZN . A ZN 501 1_555 F O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
#
_chem_comp.formula           'C21 H28 O2' 
_chem_comp.formula_weight    312.446 
_chem_comp.id                NOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-BETA-HYDROXYGON-4-EN-3-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NORGESTREL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NOG sing 248 n n 
C1 C10 NOG sing 249 n n 
C1 HC11 NOG sing 250 n n 
C1 HC12 NOG sing 251 n n 
C2 C3 NOG sing 252 n n 
C2 HC21 NOG sing 253 n n 
C2 HC22 NOG sing 254 n n 
C3 C4 NOG sing 255 n n 
C3 O3 NOG doub 256 n n 
C4 C5 NOG doub 257 n n 
C4 HC4 NOG sing 258 n n 
C5 C6 NOG sing 259 n n 
C5 C10 NOG sing 260 n n 
C6 C7 NOG sing 261 n n 
C6 HC61 NOG sing 262 n n 
C6 HC62 NOG sing 263 n n 
C7 C8 NOG sing 264 n n 
C7 HC71 NOG sing 265 n n 
C7 HC72 NOG sing 266 n n 
C8 C9 NOG sing 267 n n 
C8 C14 NOG sing 268 n n 
C8 HC8 NOG sing 269 n n 
C9 C10 NOG sing 270 n n 
C9 C11 NOG sing 271 n n 
C9 HC9 NOG sing 272 n n 
C10 H10C NOG sing 273 n n 
C11 C12 NOG sing 274 n n 
C11 H111 NOG sing 275 n n 
C11 H112 NOG sing 276 n n 
C12 C13 NOG sing 277 n n 
C12 H121 NOG sing 278 n n 
C12 H122 NOG sing 279 n n 
C13 C14 NOG sing 280 n n 
C13 C17 NOG sing 281 n n 
C13 C18 NOG sing 282 n n 
C14 C15 NOG sing 283 n n 
C14 H14C NOG sing 284 n n 
C15 C16 NOG sing 285 n n 
C15 H151 NOG sing 286 n n 
C15 H152 NOG sing 287 n n 
C16 C17 NOG sing 288 n n 
C16 H161 NOG sing 289 n n 
C16 H162 NOG sing 290 n n 
C17 C20 NOG sing 291 n n 
C17 O17 NOG sing 292 n n 
C18 C19 NOG sing 293 n n 
C18 H181 NOG sing 294 n n 
C18 H182 NOG sing 295 n n 
C19 H191 NOG sing 296 n n 
C19 H192 NOG sing 297 n n 
C19 H193 NOG sing 298 n n 
C20 C21 NOG trip 299 n n 
C21 H21C NOG sing 300 n n 
O17 H17O NOG sing 301 n n 
#
_atom_sites.entry_id                     1LHV 
_atom_sites.fract_transf_matrix[1][1]    0.009617 
_atom_sites.fract_transf_matrix[1][2]    0.005553 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011105 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 401 401 CA CA2 . 
C 3 ZN A 1 501 501 ZN ZN2 . 
D 4 NOG A 1 301 301 NOG NOR . 
E 5 IPA A 1 502 501 IPA IOH . 
F 6 HOH A 1 503 1 HOH WAT . 
F 6 HOH A 2 504 2 HOH WAT . 
F 6 HOH A 3 505 3 HOH WAT . 
F 6 HOH A 4 506 4 HOH WAT . 
F 6 HOH A 5 507 5 HOH WAT . 
F 6 HOH A 6 508 6 HOH WAT . 
F 6 HOH A 7 509 7 HOH WAT . 
F 6 HOH A 8 510 8 HOH WAT . 
F 6 HOH A 9 511 9 HOH WAT . 
F 6 HOH A 10 512 10 HOH WAT . 
F 6 HOH A 11 513 11 HOH WAT . 
F 6 HOH A 12 514 12 HOH WAT . 
F 6 HOH A 13 515 13 HOH WAT . 
F 6 HOH A 14 516 14 HOH WAT . 
F 6 HOH A 15 517 15 HOH WAT . 
F 6 HOH A 16 518 16 HOH WAT . 
F 6 HOH A 17 519 17 HOH WAT . 
F 6 HOH A 18 520 18 HOH WAT . 
F 6 HOH A 19 521 19 HOH WAT . 
F 6 HOH A 20 522 20 HOH WAT . 
F 6 HOH A 21 523 21 HOH WAT . 
F 6 HOH A 22 524 22 HOH WAT . 
F 6 HOH A 23 525 23 HOH WAT . 
F 6 HOH A 24 526 24 HOH WAT . 
F 6 HOH A 25 527 25 HOH WAT . 
F 6 HOH A 26 528 26 HOH WAT . 
F 6 HOH A 27 529 27 HOH WAT . 
F 6 HOH A 28 530 28 HOH WAT . 
F 6 HOH A 29 531 29 HOH WAT . 
F 6 HOH A 30 532 30 HOH WAT . 
F 6 HOH A 31 533 31 HOH WAT . 
F 6 HOH A 32 534 32 HOH WAT . 
F 6 HOH A 33 535 33 HOH WAT . 
F 6 HOH A 34 536 34 HOH WAT . 
F 6 HOH A 35 537 35 HOH WAT . 
F 6 HOH A 36 538 36 HOH WAT . 
F 6 HOH A 37 539 37 HOH WAT . 
F 6 HOH A 38 540 38 HOH WAT . 
F 6 HOH A 39 541 39 HOH WAT . 
F 6 HOH A 40 542 40 HOH WAT . 
F 6 HOH A 41 543 41 HOH WAT . 
F 6 HOH A 42 544 42 HOH WAT . 
F 6 HOH A 43 545 43 HOH WAT . 
F 6 HOH A 44 546 44 HOH WAT . 
F 6 HOH A 45 547 45 HOH WAT . 
F 6 HOH A 46 548 46 HOH WAT . 
F 6 HOH A 47 549 47 HOH WAT . 
F 6 HOH A 48 550 48 HOH WAT . 
F 6 HOH A 49 551 49 HOH WAT . 
F 6 HOH A 50 552 50 HOH WAT . 
F 6 HOH A 51 553 51 HOH WAT . 
F 6 HOH A 52 554 52 HOH WAT . 
F 6 HOH A 53 555 53 HOH WAT . 
F 6 HOH A 54 556 54 HOH WAT . 
F 6 HOH A 55 557 55 HOH WAT . 
F 6 HOH A 56 558 56 HOH WAT . 
F 6 HOH A 57 559 57 HOH WAT . 
F 6 HOH A 58 560 58 HOH WAT . 
F 6 HOH A 59 561 59 HOH WAT . 
F 6 HOH A 60 562 60 HOH WAT . 
F 6 HOH A 61 563 61 HOH WAT . 
F 6 HOH A 62 564 62 HOH WAT . 
F 6 HOH A 63 565 63 HOH WAT . 
F 6 HOH A 64 566 64 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NOG . . . D 4 24.387 9.85 30.697 1 39.21 ? C1 NOG 301 A 1 
HETATM 2 C C2 NOG . . . D 4 25.807 10.268 30.326 1 38.89 ? C2 NOG 301 A 1 
HETATM 3 C C3 NOG . . . D 4 26.139 11.72 30.561 1 36.35 ? C3 NOG 301 A 1 
HETATM 4 C C4 NOG . . . D 4 25.314 12.488 31.52 1 33.85 ? C4 NOG 301 A 1 
HETATM 5 C C5 NOG . . . D 4 24.244 11.966 32.181 1 37.28 ? C5 NOG 301 A 1 
HETATM 6 C C6 NOG . . . D 4 23.455 12.804 33.172 1 35.5 ? C6 NOG 301 A 1 
HETATM 7 C C7 NOG . . . D 4 21.917 12.702 32.962 1 36.44 ? C7 NOG 301 A 1 
HETATM 8 C C8 NOG . . . D 4 21.416 11.239 32.899 1 36.96 ? C8 NOG 301 A 1 
HETATM 9 C C9 NOG . . . D 4 22.182 10.484 31.782 1 37.77 ? C9 NOG 301 A 1 
HETATM 10 C C10 NOG . . . D 4 23.746 10.501 31.974 1 37.93 ? C10 NOG 301 A 1 
HETATM 11 C C11 NOG . . . D 4 21.663 9.01 31.626 1 37.88 ? C11 NOG 301 A 1 
HETATM 12 C C12 NOG . . . D 4 20.119 8.935 31.435 1 37.73 ? C12 NOG 301 A 1 
HETATM 13 C C13 NOG . . . D 4 19.366 9.641 32.595 1 39.83 ? C13 NOG 301 A 1 
HETATM 14 C C14 NOG . . . D 4 19.893 11.135 32.649 1 37.5 ? C14 NOG 301 A 1 
HETATM 15 C C15 NOG . . . D 4 18.898 11.808 33.614 1 39.92 ? C15 NOG 301 A 1 
HETATM 16 C C16 NOG . . . D 4 17.564 11.028 33.414 1 40.75 ? C16 NOG 301 A 1 
HETATM 17 C C17 NOG . . . D 4 17.836 9.919 32.372 1 41.37 ? C17 NOG 301 A 1 
HETATM 18 C C18 NOG . . . D 4 19.569 8.863 33.95 1 37.47 ? C18 NOG 301 A 1 
HETATM 19 C C19 NOG . . . D 4 19.549 7.334 33.945 1 41.28 ? C19 NOG 301 A 1 
HETATM 20 C C20 NOG . . . D 4 17.515 10.414 30.988 1 45.56 ? C20 NOG 301 A 1 
HETATM 21 C C21 NOG . . . D 4 17.236 10.776 29.914 1 47.48 ? C21 NOG 301 A 1 
HETATM 22 O O3 NOG . . . D 4 27.074 12.219 29.975 1 37.43 ? O3 NOG 301 A 1 
HETATM 23 O O17 NOG . . . D 4 17.013 8.779 32.601 1 43.4 ? O17 NOG 301 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           812 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           23 
#