data_1LII
#
_model_server_result.job_id            HkX-dX42nu_NTaKWxXuLHA 
_model_server_result.datetime_utc      '2024-11-07 17:43:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":699}' 
#
_entry.id    1LII 
#
_exptl.entry_id    1LII 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LII 
_cell.length_a            167.8 
_cell.length_b            47.1 
_cell.length_c            44.45 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LII 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O1B ACP . A ACP 799 1_555 B MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 B MG MG . A MG 999 1_555 F O HOH . A HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 52 n n 
O5' HO5' ADN sing 53 n n 
C5' C4' ADN sing 54 n n 
C5' "H5'1" ADN sing 55 n n 
C5' "H5'2" ADN sing 56 n n 
C4' O4' ADN sing 57 n n 
C4' C3' ADN sing 58 n n 
C4' H4' ADN sing 59 n n 
O4' C1' ADN sing 60 n n 
C3' O3' ADN sing 61 n n 
C3' C2' ADN sing 62 n n 
C3' H3' ADN sing 63 n n 
O3' HO3' ADN sing 64 n n 
C2' O2' ADN sing 65 n n 
C2' C1' ADN sing 66 n n 
C2' H2' ADN sing 67 n n 
O2' HO2' ADN sing 68 n n 
C1' N9 ADN sing 69 n n 
C1' H1' ADN sing 70 n n 
N9 C8 ADN sing 71 n y 
N9 C4 ADN sing 72 n y 
C8 N7 ADN doub 73 n y 
C8 H8 ADN sing 74 n n 
N7 C5 ADN sing 75 n y 
C5 C6 ADN sing 76 n y 
C5 C4 ADN doub 77 n y 
C6 N6 ADN sing 78 n n 
C6 N1 ADN doub 79 n y 
N6 HN61 ADN sing 80 n n 
N6 HN62 ADN sing 81 n n 
N1 C2 ADN sing 82 n y 
C2 N3 ADN doub 83 n y 
C2 H2 ADN sing 84 n n 
N3 C4 ADN sing 85 n y 
#
_atom_sites.entry_id                     1LII 
_atom_sites.fract_transf_matrix[1][1]    0.005959 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 999 999 MG MG . 
C 3 CL A 1 899 899 CL CL . 
D 4 ADN A 1 699 699 ADN ADN . 
E 5 ACP A 1 799 799 ACP ACP . 
F 6 HOH A 1 1000 100 HOH HOH . 
F 6 HOH A 2 1001 101 HOH HOH . 
F 6 HOH A 3 1002 102 HOH HOH . 
F 6 HOH A 4 1003 103 HOH HOH . 
F 6 HOH A 5 1004 104 HOH HOH . 
F 6 HOH A 6 1005 105 HOH HOH . 
F 6 HOH A 7 1006 106 HOH HOH . 
F 6 HOH A 8 1007 107 HOH HOH . 
F 6 HOH A 9 1008 108 HOH HOH . 
F 6 HOH A 10 1009 109 HOH HOH . 
F 6 HOH A 11 1010 110 HOH HOH . 
F 6 HOH A 12 1011 111 HOH HOH . 
F 6 HOH A 13 1012 112 HOH HOH . 
F 6 HOH A 14 1013 113 HOH HOH . 
F 6 HOH A 15 1014 114 HOH HOH . 
F 6 HOH A 16 1015 115 HOH HOH . 
F 6 HOH A 17 1016 116 HOH HOH . 
F 6 HOH A 18 1017 117 HOH HOH . 
F 6 HOH A 19 1018 118 HOH HOH . 
F 6 HOH A 20 1019 119 HOH HOH . 
F 6 HOH A 21 1020 120 HOH HOH . 
F 6 HOH A 22 1021 121 HOH HOH . 
F 6 HOH A 23 1022 122 HOH HOH . 
F 6 HOH A 24 1023 123 HOH HOH . 
F 6 HOH A 25 1024 124 HOH HOH . 
F 6 HOH A 26 1025 125 HOH HOH . 
F 6 HOH A 27 1026 126 HOH HOH . 
F 6 HOH A 28 1027 127 HOH HOH . 
F 6 HOH A 29 1028 128 HOH HOH . 
F 6 HOH A 30 1029 129 HOH HOH . 
F 6 HOH A 31 1030 130 HOH HOH . 
F 6 HOH A 32 1031 131 HOH HOH . 
F 6 HOH A 33 1032 132 HOH HOH . 
F 6 HOH A 34 1033 133 HOH HOH . 
F 6 HOH A 35 1034 134 HOH HOH . 
F 6 HOH A 36 1035 135 HOH HOH . 
F 6 HOH A 37 1036 136 HOH HOH . 
F 6 HOH A 38 1037 137 HOH HOH . 
F 6 HOH A 39 1038 138 HOH HOH . 
F 6 HOH A 40 1039 139 HOH HOH . 
F 6 HOH A 41 1040 140 HOH HOH . 
F 6 HOH A 42 1041 141 HOH HOH . 
F 6 HOH A 43 1042 142 HOH HOH . 
F 6 HOH A 44 1043 143 HOH HOH . 
F 6 HOH A 45 1044 144 HOH HOH . 
F 6 HOH A 46 1045 145 HOH HOH . 
F 6 HOH A 47 1046 146 HOH HOH . 
F 6 HOH A 48 1047 147 HOH HOH . 
F 6 HOH A 49 1048 148 HOH HOH . 
F 6 HOH A 50 1049 149 HOH HOH . 
F 6 HOH A 51 1050 150 HOH HOH . 
F 6 HOH A 52 1051 200 HOH HOH . 
F 6 HOH A 53 1052 201 HOH HOH . 
F 6 HOH A 54 1053 202 HOH HOH . 
F 6 HOH A 55 1054 203 HOH HOH . 
F 6 HOH A 56 1055 204 HOH HOH . 
F 6 HOH A 57 1056 205 HOH HOH . 
F 6 HOH A 58 1057 206 HOH HOH . 
F 6 HOH A 59 1058 207 HOH HOH . 
F 6 HOH A 60 1059 208 HOH HOH . 
F 6 HOH A 61 1060 209 HOH HOH . 
F 6 HOH A 62 1061 210 HOH HOH . 
F 6 HOH A 63 1062 211 HOH HOH . 
F 6 HOH A 64 1063 212 HOH HOH . 
F 6 HOH A 65 1064 213 HOH HOH . 
F 6 HOH A 66 1065 214 HOH HOH . 
F 6 HOH A 67 1066 215 HOH HOH . 
F 6 HOH A 68 1067 216 HOH HOH . 
F 6 HOH A 69 1068 217 HOH HOH . 
F 6 HOH A 70 1069 218 HOH HOH . 
F 6 HOH A 71 1070 219 HOH HOH . 
F 6 HOH A 72 1071 220 HOH HOH . 
F 6 HOH A 73 1072 221 HOH HOH . 
F 6 HOH A 74 1073 222 HOH HOH . 
F 6 HOH A 75 1074 223 HOH HOH . 
F 6 HOH A 76 1075 224 HOH HOH . 
F 6 HOH A 77 1076 225 HOH HOH . 
F 6 HOH A 78 1077 226 HOH HOH . 
F 6 HOH A 79 1078 227 HOH HOH . 
F 6 HOH A 80 1079 228 HOH HOH . 
F 6 HOH A 81 1080 229 HOH HOH . 
F 6 HOH A 82 1081 230 HOH HOH . 
F 6 HOH A 83 1082 231 HOH HOH . 
F 6 HOH A 84 1083 232 HOH HOH . 
F 6 HOH A 85 1084 233 HOH HOH . 
F 6 HOH A 86 1085 234 HOH HOH . 
F 6 HOH A 87 1086 235 HOH HOH . 
F 6 HOH A 88 1087 236 HOH HOH . 
F 6 HOH A 89 1088 301 HOH HOH . 
F 6 HOH A 90 1089 302 HOH HOH . 
F 6 HOH A 91 1090 303 HOH HOH . 
F 6 HOH A 92 1091 304 HOH HOH . 
F 6 HOH A 93 1092 305 HOH HOH . 
F 6 HOH A 94 1093 306 HOH HOH . 
F 6 HOH A 95 1094 307 HOH HOH . 
F 6 HOH A 96 1095 308 HOH HOH . 
F 6 HOH A 97 1096 309 HOH HOH . 
F 6 HOH A 98 1097 310 HOH HOH . 
F 6 HOH A 99 1098 312 HOH HOH . 
F 6 HOH A 100 1099 313 HOH HOH . 
F 6 HOH A 101 1100 314 HOH HOH . 
F 6 HOH A 102 1101 315 HOH HOH . 
F 6 HOH A 103 1102 316 HOH HOH . 
F 6 HOH A 104 1103 317 HOH HOH . 
F 6 HOH A 105 1104 318 HOH HOH . 
F 6 HOH A 106 1105 319 HOH HOH . 
F 6 HOH A 107 1106 320 HOH HOH . 
F 6 HOH A 108 1107 321 HOH HOH . 
F 6 HOH A 109 1108 322 HOH HOH . 
F 6 HOH A 110 1109 323 HOH HOH . 
F 6 HOH A 111 1110 324 HOH HOH . 
F 6 HOH A 112 1111 325 HOH HOH . 
F 6 HOH A 113 1112 326 HOH HOH . 
F 6 HOH A 114 1113 327 HOH HOH . 
F 6 HOH A 115 1114 328 HOH HOH . 
F 6 HOH A 116 1115 329 HOH HOH . 
F 6 HOH A 117 1116 330 HOH HOH . 
F 6 HOH A 118 1117 400 HOH HOH . 
F 6 HOH A 119 1118 401 HOH HOH . 
F 6 HOH A 120 1119 402 HOH HOH . 
F 6 HOH A 121 1120 403 HOH HOH . 
F 6 HOH A 122 1121 404 HOH HOH . 
F 6 HOH A 123 1122 405 HOH HOH . 
F 6 HOH A 124 1123 406 HOH HOH . 
F 6 HOH A 125 1124 407 HOH HOH . 
F 6 HOH A 126 1125 408 HOH HOH . 
F 6 HOH A 127 1126 409 HOH HOH . 
F 6 HOH A 128 1127 410 HOH HOH . 
F 6 HOH A 129 1128 411 HOH HOH . 
F 6 HOH A 130 1129 412 HOH HOH . 
F 6 HOH A 131 1130 413 HOH HOH . 
F 6 HOH A 132 1131 414 HOH HOH . 
F 6 HOH A 133 1132 415 HOH HOH . 
F 6 HOH A 134 1133 416 HOH HOH . 
F 6 HOH A 135 1134 417 HOH HOH . 
F 6 HOH A 136 1135 418 HOH HOH . 
F 6 HOH A 137 1136 419 HOH HOH . 
F 6 HOH A 138 1137 420 HOH HOH . 
F 6 HOH A 139 1138 421 HOH HOH . 
F 6 HOH A 140 1139 423 HOH HOH . 
F 6 HOH A 141 1140 424 HOH HOH . 
F 6 HOH A 142 1141 425 HOH HOH . 
F 6 HOH A 143 1142 500 HOH HOH . 
F 6 HOH A 144 1143 501 HOH HOH . 
F 6 HOH A 145 1144 502 HOH HOH . 
F 6 HOH A 146 1145 503 HOH HOH . 
F 6 HOH A 147 1146 504 HOH HOH . 
F 6 HOH A 148 1147 505 HOH HOH . 
F 6 HOH A 149 1148 506 HOH HOH . 
F 6 HOH A 150 1149 507 HOH HOH . 
F 6 HOH A 151 1150 508 HOH HOH . 
F 6 HOH A 152 1151 509 HOH HOH . 
F 6 HOH A 153 1152 510 HOH HOH . 
F 6 HOH A 154 1153 511 HOH HOH . 
F 6 HOH A 155 1154 512 HOH HOH . 
F 6 HOH A 156 1155 513 HOH HOH . 
F 6 HOH A 157 1156 514 HOH HOH . 
F 6 HOH A 158 1157 515 HOH HOH . 
F 6 HOH A 159 1158 516 HOH HOH . 
F 6 HOH A 160 1159 517 HOH HOH . 
F 6 HOH A 161 1160 518 HOH HOH . 
F 6 HOH A 162 1161 519 HOH HOH . 
F 6 HOH A 163 1162 520 HOH HOH . 
F 6 HOH A 164 1163 521 HOH HOH . 
F 6 HOH A 165 1164 522 HOH HOH . 
F 6 HOH A 166 1165 523 HOH HOH . 
F 6 HOH A 167 1166 524 HOH HOH . 
F 6 HOH A 168 1167 525 HOH HOH . 
F 6 HOH A 169 1168 526 HOH HOH . 
F 6 HOH A 170 1169 527 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . D 4 140.362 22.818 -6.535 1 15.29 ? O5' ADN 699 A 1 
HETATM 2 C C5' ADN . . . D 4 139.111 22.238 -6.887 1 13.1 ? C5' ADN 699 A 1 
HETATM 3 C C4' ADN . . . D 4 138.047 23.221 -6.449 1 10.39 ? C4' ADN 699 A 1 
HETATM 4 O O4' ADN . . . D 4 138.179 24.42 -7.224 1 10.36 ? O4' ADN 699 A 1 
HETATM 5 C C3' ADN . . . D 4 136.586 22.778 -6.606 1 10.04 ? C3' ADN 699 A 1 
HETATM 6 O O3' ADN . . . D 4 136.062 22.462 -5.329 1 11.13 ? O3' ADN 699 A 1 
HETATM 7 C C2' ADN . . . D 4 135.874 23.985 -7.23 1 9.63 ? C2' ADN 699 A 1 
HETATM 8 O O2' ADN . . . D 4 134.744 24.399 -6.493 1 11.47 ? O2' ADN 699 A 1 
HETATM 9 C C1' ADN . . . D 4 136.928 25.075 -7.118 1 10.49 ? C1' ADN 699 A 1 
HETATM 10 N N9 ADN . . . D 4 136.837 26.09 -8.135 1 9.43 ? N9 ADN 699 A 1 
HETATM 11 C C8 ADN . . . D 4 136.707 25.919 -9.487 1 10.17 ? C8 ADN 699 A 1 
HETATM 12 N N7 ADN . . . D 4 136.642 27.06 -10.15 1 10.21 ? N7 ADN 699 A 1 
HETATM 13 C C5 ADN . . . D 4 136.763 28.029 -9.16 1 9.84 ? C5 ADN 699 A 1 
HETATM 14 C C6 ADN . . . D 4 136.778 29.427 -9.214 1 10.29 ? C6 ADN 699 A 1 
HETATM 15 N N6 ADN . . . D 4 136.673 30.138 -10.354 1 10.97 ? N6 ADN 699 A 1 
HETATM 16 N N1 ADN . . . D 4 136.905 30.078 -8.049 1 10.7 ? N1 ADN 699 A 1 
HETATM 17 C C2 ADN . . . D 4 137.015 29.367 -6.929 1 10.3 ? C2 ADN 699 A 1 
HETATM 18 N N3 ADN . . . D 4 137.017 28.068 -6.743 1 10.16 ? N3 ADN 699 A 1 
HETATM 19 C C4 ADN . . . D 4 136.88 27.443 -7.914 1 10.17 ? C4 ADN 699 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#