data_1LIJ
#
_model_server_result.job_id            eTuD5vjFGzxXXcwyfOO69A 
_model_server_result.datetime_utc      '2024-11-23 07:08:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lij 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":699}' 
#
_entry.id    1LIJ 
#
_exptl.entry_id    1LIJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.154 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-RIBOFURANOSYL-3-IODO-2,3-DIHYDRO-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LIJ 
_cell.length_a            167.7 
_cell.length_b            46.97 
_cell.length_c            44.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LIJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O1B ACP . A ACP 799 1_555 C MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc2 E O3A ACP . A ACP 799 1_555 C MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
#
_chem_comp.formula           'C10 H14 I N5 O4' 
_chem_comp.formula_weight    395.154 
_chem_comp.id                RPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-RIBOFURANOSYL-3-IODO-2,3-DIHYDRO-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
I C7 RPP sing 328 n n 
N1 C2 RPP doub 329 n y 
N1 C6 RPP sing 330 n y 
C2 N3 RPP sing 331 n y 
C2 H2 RPP sing 332 n n 
N3 C4 RPP doub 333 n y 
C4 C5 RPP sing 334 n y 
C4 N9 RPP sing 335 n n 
C5 C6 RPP doub 336 n y 
C5 C7 RPP sing 337 n n 
C6 N6 RPP sing 338 n n 
N6 HN61 RPP sing 339 n n 
N6 HN62 RPP sing 340 n n 
C7 N8 RPP sing 341 n n 
C7 H7 RPP sing 342 n n 
N8 N9 RPP sing 343 n n 
N8 HN8 RPP sing 344 n n 
N9 C1' RPP sing 345 n n 
C1' C2' RPP sing 346 n n 
C1' O4' RPP sing 347 n n 
C1' H1' RPP sing 348 n n 
C2' C3' RPP sing 349 n n 
C2' O2' RPP sing 350 n n 
C2' H2' RPP sing 351 n n 
C3' C4' RPP sing 352 n n 
C3' O3' RPP sing 353 n n 
C3' H3' RPP sing 354 n n 
C4' O4' RPP sing 355 n n 
C4' C5' RPP sing 356 n n 
C4' H4' RPP sing 357 n n 
O2' "HO'2" RPP sing 358 n n 
O3' "HO'3" RPP sing 359 n n 
C5' O5' RPP sing 360 n n 
C5' "H5'1" RPP sing 361 n n 
C5' "H5'2" RPP sing 362 n n 
O5' "HO'5" RPP sing 363 n n 
#
_atom_sites.entry_id                     1LIJ 
_atom_sites.fract_transf_matrix[1][1]    0.005963 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 899 899 CL CL . 
C 3 MG A 1 999 999 MG MG . 
D 4 RPP A 1 699 699 RPP RPP . 
E 5 ACP A 1 799 799 ACP ACP . 
F 6 HOH A 1 1000 100 HOH HOH . 
F 6 HOH A 2 1001 101 HOH HOH . 
F 6 HOH A 3 1002 102 HOH HOH . 
F 6 HOH A 4 1003 103 HOH HOH . 
F 6 HOH A 5 1004 104 HOH HOH . 
F 6 HOH A 6 1005 105 HOH HOH . 
F 6 HOH A 7 1006 106 HOH HOH . 
F 6 HOH A 8 1007 107 HOH HOH . 
F 6 HOH A 9 1008 108 HOH HOH . 
F 6 HOH A 10 1009 109 HOH HOH . 
F 6 HOH A 11 1010 110 HOH HOH . 
F 6 HOH A 12 1011 111 HOH HOH . 
F 6 HOH A 13 1012 112 HOH HOH . 
F 6 HOH A 14 1013 113 HOH HOH . 
F 6 HOH A 15 1014 114 HOH HOH . 
F 6 HOH A 16 1015 115 HOH HOH . 
F 6 HOH A 17 1016 116 HOH HOH . 
F 6 HOH A 18 1017 117 HOH HOH . 
F 6 HOH A 19 1018 118 HOH HOH . 
F 6 HOH A 20 1019 119 HOH HOH . 
F 6 HOH A 21 1020 120 HOH HOH . 
F 6 HOH A 22 1021 121 HOH HOH . 
F 6 HOH A 23 1022 122 HOH HOH . 
F 6 HOH A 24 1023 123 HOH HOH . 
F 6 HOH A 25 1024 124 HOH HOH . 
F 6 HOH A 26 1025 125 HOH HOH . 
F 6 HOH A 27 1026 126 HOH HOH . 
F 6 HOH A 28 1027 127 HOH HOH . 
F 6 HOH A 29 1028 128 HOH HOH . 
F 6 HOH A 30 1029 129 HOH HOH . 
F 6 HOH A 31 1030 130 HOH HOH . 
F 6 HOH A 32 1031 131 HOH HOH . 
F 6 HOH A 33 1032 132 HOH HOH . 
F 6 HOH A 34 1033 133 HOH HOH . 
F 6 HOH A 35 1034 134 HOH HOH . 
F 6 HOH A 36 1035 135 HOH HOH . 
F 6 HOH A 37 1036 136 HOH HOH . 
F 6 HOH A 38 1037 137 HOH HOH . 
F 6 HOH A 39 1038 138 HOH HOH . 
F 6 HOH A 40 1039 139 HOH HOH . 
F 6 HOH A 41 1040 140 HOH HOH . 
F 6 HOH A 42 1041 141 HOH HOH . 
F 6 HOH A 43 1042 142 HOH HOH . 
F 6 HOH A 44 1043 143 HOH HOH . 
F 6 HOH A 45 1044 144 HOH HOH . 
F 6 HOH A 46 1045 145 HOH HOH . 
F 6 HOH A 47 1046 146 HOH HOH . 
F 6 HOH A 48 1047 147 HOH HOH . 
F 6 HOH A 49 1048 148 HOH HOH . 
F 6 HOH A 50 1049 149 HOH HOH . 
F 6 HOH A 51 1050 150 HOH HOH . 
F 6 HOH A 52 1051 151 HOH HOH . 
F 6 HOH A 53 1052 152 HOH HOH . 
F 6 HOH A 54 1053 153 HOH HOH . 
F 6 HOH A 55 1054 154 HOH HOH . 
F 6 HOH A 56 1055 155 HOH HOH . 
F 6 HOH A 57 1056 156 HOH HOH . 
F 6 HOH A 58 1057 157 HOH HOH . 
F 6 HOH A 59 1058 158 HOH HOH . 
F 6 HOH A 60 1059 159 HOH HOH . 
F 6 HOH A 61 1060 160 HOH HOH . 
F 6 HOH A 62 1061 161 HOH HOH . 
F 6 HOH A 63 1062 162 HOH HOH . 
F 6 HOH A 64 1063 163 HOH HOH . 
F 6 HOH A 65 1064 164 HOH HOH . 
F 6 HOH A 66 1065 165 HOH HOH . 
F 6 HOH A 67 1066 166 HOH HOH . 
F 6 HOH A 68 1067 167 HOH HOH . 
F 6 HOH A 69 1068 168 HOH HOH . 
F 6 HOH A 70 1069 169 HOH HOH . 
F 6 HOH A 71 1070 170 HOH HOH . 
F 6 HOH A 72 1071 171 HOH HOH . 
F 6 HOH A 73 1072 172 HOH HOH . 
F 6 HOH A 74 1073 173 HOH HOH . 
F 6 HOH A 75 1074 174 HOH HOH . 
F 6 HOH A 76 1075 175 HOH HOH . 
F 6 HOH A 77 1076 176 HOH HOH . 
F 6 HOH A 78 1077 177 HOH HOH . 
F 6 HOH A 79 1078 178 HOH HOH . 
F 6 HOH A 80 1079 179 HOH HOH . 
F 6 HOH A 81 1080 180 HOH HOH . 
F 6 HOH A 82 1081 181 HOH HOH . 
F 6 HOH A 83 1082 182 HOH HOH . 
F 6 HOH A 84 1083 183 HOH HOH . 
F 6 HOH A 85 1084 184 HOH HOH . 
F 6 HOH A 86 1085 185 HOH HOH . 
F 6 HOH A 87 1086 186 HOH HOH . 
F 6 HOH A 88 1087 187 HOH HOH . 
F 6 HOH A 89 1088 200 HOH HOH . 
F 6 HOH A 90 1089 202 HOH HOH . 
F 6 HOH A 91 1090 203 HOH HOH . 
F 6 HOH A 92 1091 204 HOH HOH . 
F 6 HOH A 93 1092 205 HOH HOH . 
F 6 HOH A 94 1093 206 HOH HOH . 
F 6 HOH A 95 1094 207 HOH HOH . 
F 6 HOH A 96 1095 208 HOH HOH . 
F 6 HOH A 97 1096 209 HOH HOH . 
F 6 HOH A 98 1097 210 HOH HOH . 
F 6 HOH A 99 1098 211 HOH HOH . 
F 6 HOH A 100 1099 212 HOH HOH . 
F 6 HOH A 101 1100 213 HOH HOH . 
F 6 HOH A 102 1101 214 HOH HOH . 
F 6 HOH A 103 1102 215 HOH HOH . 
F 6 HOH A 104 1103 216 HOH HOH . 
F 6 HOH A 105 1104 217 HOH HOH . 
F 6 HOH A 106 1105 218 HOH HOH . 
F 6 HOH A 107 1106 219 HOH HOH . 
F 6 HOH A 108 1107 220 HOH HOH . 
F 6 HOH A 109 1108 221 HOH HOH . 
F 6 HOH A 110 1109 223 HOH HOH . 
F 6 HOH A 111 1110 224 HOH HOH . 
F 6 HOH A 112 1111 225 HOH HOH . 
F 6 HOH A 113 1112 226 HOH HOH . 
F 6 HOH A 114 1113 227 HOH HOH . 
F 6 HOH A 115 1114 228 HOH HOH . 
F 6 HOH A 116 1115 229 HOH HOH . 
F 6 HOH A 117 1116 230 HOH HOH . 
F 6 HOH A 118 1117 231 HOH HOH . 
F 6 HOH A 119 1118 232 HOH HOH . 
F 6 HOH A 120 1119 233 HOH HOH . 
F 6 HOH A 121 1120 234 HOH HOH . 
F 6 HOH A 122 1121 235 HOH HOH . 
F 6 HOH A 123 1122 236 HOH HOH . 
F 6 HOH A 124 1123 237 HOH HOH . 
F 6 HOH A 125 1124 238 HOH HOH . 
F 6 HOH A 126 1125 239 HOH HOH . 
F 6 HOH A 127 1126 240 HOH HOH . 
F 6 HOH A 128 1127 241 HOH HOH . 
F 6 HOH A 129 1128 242 HOH HOH . 
F 6 HOH A 130 1129 243 HOH HOH . 
F 6 HOH A 131 1130 244 HOH HOH . 
F 6 HOH A 132 1131 245 HOH HOH . 
F 6 HOH A 133 1132 246 HOH HOH . 
F 6 HOH A 134 1133 247 HOH HOH . 
F 6 HOH A 135 1134 248 HOH HOH . 
F 6 HOH A 136 1135 249 HOH HOH . 
F 6 HOH A 137 1136 250 HOH HOH . 
F 6 HOH A 138 1137 251 HOH HOH . 
F 6 HOH A 139 1138 252 HOH HOH . 
F 6 HOH A 140 1139 253 HOH HOH . 
F 6 HOH A 141 1140 301 HOH HOH . 
F 6 HOH A 142 1141 302 HOH HOH . 
F 6 HOH A 143 1142 303 HOH HOH . 
F 6 HOH A 144 1143 304 HOH HOH . 
F 6 HOH A 145 1144 305 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 I I RPP . . . D 4 137.139 27 -12.431 1 17 ? I RPP 699 A 1 
HETATM 2 N N1 RPP . . . D 4 136.857 29.9 -8.352 1 14 ? N1 RPP 699 A 1 
HETATM 3 C C2 RPP . . . D 4 136.831 29.19 -7.225 1 13.99 ? C2 RPP 699 A 1 
HETATM 4 N N3 RPP . . . D 4 136.857 27.87 -7.07 1 13.94 ? N3 RPP 699 A 1 
HETATM 5 C C4 RPP . . . D 4 136.937 27.24 -8.257 1 14.38 ? C4 RPP 699 A 1 
HETATM 6 C C5 RPP . . . D 4 136.94 27.823 -9.508 1 13.66 ? C5 RPP 699 A 1 
HETATM 7 C C6 RPP . . . D 4 136.942 29.247 -9.535 1 13.76 ? C6 RPP 699 A 1 
HETATM 8 N N6 RPP . . . D 4 136.954 29.981 -10.65 1 14.77 ? N6 RPP 699 A 1 
HETATM 9 C C7 RPP . . . D 4 136.996 26.825 -10.479 1 14.64 ? C7 RPP 699 A 1 
HETATM 10 N N8 RPP . . . D 4 137.026 25.698 -9.814 1 14.85 ? N8 RPP 699 A 1 
HETATM 11 N N9 RPP . . . D 4 136.934 25.876 -8.465 1 14.32 ? N9 RPP 699 A 1 
HETATM 12 C C1' RPP . . . D 4 136.9 24.977 -7.317 1 15.43 ? C1' RPP 699 A 1 
HETATM 13 C C2' RPP . . . D 4 135.813 23.901 -7.405 1 15.16 ? C2' RPP 699 A 1 
HETATM 14 C C3' RPP . . . D 4 136.446 22.703 -6.682 1 15 ? C3' RPP 699 A 1 
HETATM 15 C C4' RPP . . . D 4 137.912 23.086 -6.48 1 15.28 ? C4' RPP 699 A 1 
HETATM 16 O O4' RPP . . . D 4 138.11 24.265 -7.287 1 15.47 ? O4' RPP 699 A 1 
HETATM 17 O O2' RPP . . . D 4 134.63 24.344 -6.769 1 16.47 ? O2' RPP 699 A 1 
HETATM 18 O O3' RPP . . . D 4 135.832 22.471 -5.429 1 16.49 ? O3' RPP 699 A 1 
HETATM 19 C C5' RPP . . . D 4 138.908 22.015 -6.896 1 16.82 ? C5' RPP 699 A 1 
HETATM 20 O O5' RPP . . . D 4 140.235 22.434 -6.605 1 18.27 ? O5' RPP 699 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#