data_1LIK # _model_server_result.job_id erN820fbZnB1xxLitXzF9w _model_server_result.datetime_utc '2024-11-23 06:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":699}' # _entry.id 1LIK # _exptl.entry_id 1LIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LIK _cell.length_a 168.2 _cell.length_b 47.01 _cell.length_c 44.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 1LIK _atom_sites.fract_transf_matrix[1][1] 0.005945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 999 999 SO4 SO4 . C 3 CL A 1 899 899 CL CL . D 4 ADN A 1 699 699 ADN ADN . E 4 ADN A 1 799 799 ADN ADN . F 5 HOH A 1 1000 100 HOH HOH . F 5 HOH A 2 1001 101 HOH HOH . F 5 HOH A 3 1002 102 HOH HOH . F 5 HOH A 4 1003 103 HOH HOH . F 5 HOH A 5 1004 104 HOH HOH . F 5 HOH A 6 1005 105 HOH HOH . F 5 HOH A 7 1006 106 HOH HOH . F 5 HOH A 8 1007 107 HOH HOH . F 5 HOH A 9 1008 108 HOH HOH . F 5 HOH A 10 1009 109 HOH HOH . F 5 HOH A 11 1010 110 HOH HOH . F 5 HOH A 12 1011 111 HOH HOH . F 5 HOH A 13 1012 112 HOH HOH . F 5 HOH A 14 1013 113 HOH HOH . F 5 HOH A 15 1014 114 HOH HOH . F 5 HOH A 16 1015 115 HOH HOH . F 5 HOH A 17 1016 116 HOH HOH . F 5 HOH A 18 1017 117 HOH HOH . F 5 HOH A 19 1018 118 HOH HOH . F 5 HOH A 20 1019 119 HOH HOH . F 5 HOH A 21 1020 120 HOH HOH . F 5 HOH A 22 1021 121 HOH HOH . F 5 HOH A 23 1022 122 HOH HOH . F 5 HOH A 24 1023 123 HOH HOH . F 5 HOH A 25 1024 124 HOH HOH . F 5 HOH A 26 1025 125 HOH HOH . F 5 HOH A 27 1026 126 HOH HOH . F 5 HOH A 28 1027 127 HOH HOH . F 5 HOH A 29 1028 128 HOH HOH . F 5 HOH A 30 1029 129 HOH HOH . F 5 HOH A 31 1030 130 HOH HOH . F 5 HOH A 32 1031 131 HOH HOH . F 5 HOH A 33 1032 132 HOH HOH . F 5 HOH A 34 1033 133 HOH HOH . F 5 HOH A 35 1034 134 HOH HOH . F 5 HOH A 36 1035 135 HOH HOH . F 5 HOH A 37 1036 136 HOH HOH . F 5 HOH A 38 1037 137 HOH HOH . F 5 HOH A 39 1038 138 HOH HOH . F 5 HOH A 40 1039 139 HOH HOH . F 5 HOH A 41 1040 140 HOH HOH . F 5 HOH A 42 1041 141 HOH HOH . F 5 HOH A 43 1042 142 HOH HOH . F 5 HOH A 44 1043 143 HOH HOH . F 5 HOH A 45 1044 144 HOH HOH . F 5 HOH A 46 1045 145 HOH HOH . F 5 HOH A 47 1046 146 HOH HOH . F 5 HOH A 48 1047 147 HOH HOH . F 5 HOH A 49 1048 148 HOH HOH . F 5 HOH A 50 1049 149 HOH HOH . F 5 HOH A 51 1050 150 HOH HOH . F 5 HOH A 52 1051 151 HOH HOH . F 5 HOH A 53 1052 152 HOH HOH . F 5 HOH A 54 1053 153 HOH HOH . F 5 HOH A 55 1054 154 HOH HOH . F 5 HOH A 56 1055 155 HOH HOH . F 5 HOH A 57 1056 156 HOH HOH . F 5 HOH A 58 1057 157 HOH HOH . F 5 HOH A 59 1058 158 HOH HOH . F 5 HOH A 60 1059 159 HOH HOH . F 5 HOH A 61 1060 160 HOH HOH . F 5 HOH A 62 1061 161 HOH HOH . F 5 HOH A 63 1062 162 HOH HOH . F 5 HOH A 64 1063 163 HOH HOH . F 5 HOH A 65 1064 164 HOH HOH . F 5 HOH A 66 1065 165 HOH HOH . F 5 HOH A 67 1066 166 HOH HOH . F 5 HOH A 68 1067 167 HOH HOH . F 5 HOH A 69 1068 168 HOH HOH . F 5 HOH A 70 1069 169 HOH HOH . F 5 HOH A 71 1070 170 HOH HOH . F 5 HOH A 72 1071 171 HOH HOH . F 5 HOH A 73 1072 172 HOH HOH . F 5 HOH A 74 1073 173 HOH HOH . F 5 HOH A 75 1074 200 HOH HOH . F 5 HOH A 76 1075 201 HOH HOH . F 5 HOH A 77 1076 202 HOH HOH . F 5 HOH A 78 1077 203 HOH HOH . F 5 HOH A 79 1078 204 HOH HOH . F 5 HOH A 80 1079 205 HOH HOH . F 5 HOH A 81 1080 206 HOH HOH . F 5 HOH A 82 1081 207 HOH HOH . F 5 HOH A 83 1082 208 HOH HOH . F 5 HOH A 84 1083 209 HOH HOH . F 5 HOH A 85 1084 210 HOH HOH . F 5 HOH A 86 1085 211 HOH HOH . F 5 HOH A 87 1086 212 HOH HOH . F 5 HOH A 88 1087 213 HOH HOH . F 5 HOH A 89 1088 214 HOH HOH . F 5 HOH A 90 1089 215 HOH HOH . F 5 HOH A 91 1090 216 HOH HOH . F 5 HOH A 92 1091 217 HOH HOH . F 5 HOH A 93 1092 218 HOH HOH . F 5 HOH A 94 1093 219 HOH HOH . F 5 HOH A 95 1094 220 HOH HOH . F 5 HOH A 96 1095 221 HOH HOH . F 5 HOH A 97 1096 222 HOH HOH . F 5 HOH A 98 1097 223 HOH HOH . F 5 HOH A 99 1098 224 HOH HOH . F 5 HOH A 100 1099 225 HOH HOH . F 5 HOH A 101 1100 226 HOH HOH . F 5 HOH A 102 1101 227 HOH HOH . F 5 HOH A 103 1102 228 HOH HOH . F 5 HOH A 104 1103 229 HOH HOH . F 5 HOH A 105 1104 230 HOH HOH . F 5 HOH A 106 1105 231 HOH HOH . F 5 HOH A 107 1106 232 HOH HOH . F 5 HOH A 108 1107 233 HOH HOH . F 5 HOH A 109 1108 234 HOH HOH . F 5 HOH A 110 1109 235 HOH HOH . F 5 HOH A 111 1110 236 HOH HOH . F 5 HOH A 112 1111 237 HOH HOH . F 5 HOH A 113 1112 238 HOH HOH . F 5 HOH A 114 1113 239 HOH HOH . F 5 HOH A 115 1114 240 HOH HOH . F 5 HOH A 116 1115 241 HOH HOH . F 5 HOH A 117 1116 242 HOH HOH . F 5 HOH A 118 1117 243 HOH HOH . F 5 HOH A 119 1118 244 HOH HOH . F 5 HOH A 120 1119 245 HOH HOH . F 5 HOH A 121 1120 246 HOH HOH . F 5 HOH A 122 1121 247 HOH HOH . F 5 HOH A 123 1122 248 HOH HOH . F 5 HOH A 124 1123 249 HOH HOH . F 5 HOH A 125 1124 250 HOH HOH . F 5 HOH A 126 1125 251 HOH HOH . F 5 HOH A 127 1126 252 HOH HOH . F 5 HOH A 128 1127 253 HOH HOH . F 5 HOH A 129 1128 254 HOH HOH . F 5 HOH A 130 1129 255 HOH HOH . F 5 HOH A 131 1130 256 HOH HOH . F 5 HOH A 132 1131 257 HOH HOH . F 5 HOH A 133 1132 258 HOH HOH . F 5 HOH A 134 1133 259 HOH HOH . F 5 HOH A 135 1134 260 HOH HOH . F 5 HOH A 136 1135 261 HOH HOH . F 5 HOH A 137 1136 300 HOH HOH . F 5 HOH A 138 1137 301 HOH HOH . F 5 HOH A 139 1138 302 HOH HOH . F 5 HOH A 140 1139 303 HOH HOH . F 5 HOH A 141 1140 304 HOH HOH . F 5 HOH A 142 1141 305 HOH HOH . F 5 HOH A 143 1142 306 HOH HOH . F 5 HOH A 144 1143 307 HOH HOH . F 5 HOH A 145 1144 308 HOH HOH . F 5 HOH A 146 1145 309 HOH HOH . F 5 HOH A 147 1146 310 HOH HOH . F 5 HOH A 148 1147 311 HOH HOH . F 5 HOH A 149 1148 312 HOH HOH . F 5 HOH A 150 1149 313 HOH HOH . F 5 HOH A 151 1150 314 HOH HOH . F 5 HOH A 152 1151 315 HOH HOH . F 5 HOH A 153 1152 316 HOH HOH . F 5 HOH A 154 1153 317 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . D 4 140.489 22.735 -6.431 1 15.39 ? O5' ADN 699 A 1 HETATM 2 C C5' ADN . . . D 4 139.206 22.282 -6.838 1 13.32 ? C5' ADN 699 A 1 HETATM 3 C C4' ADN . . . D 4 138.145 23.313 -6.5 1 11.27 ? C4' ADN 699 A 1 HETATM 4 O O4' ADN . . . D 4 138.286 24.476 -7.336 1 11.19 ? O4' ADN 699 A 1 HETATM 5 C C3' ADN . . . D 4 136.695 22.852 -6.646 1 10.53 ? C3' ADN 699 A 1 HETATM 6 O O3' ADN . . . D 4 136.165 22.583 -5.352 1 11.95 ? O3' ADN 699 A 1 HETATM 7 C C2' ADN . . . D 4 136 24.05 -7.316 1 10.96 ? C2' ADN 699 A 1 HETATM 8 O O2' ADN . . . D 4 134.851 24.444 -6.598 1 13.04 ? O2' ADN 699 A 1 HETATM 9 C C1' ADN . . . D 4 137.077 25.154 -7.243 1 11.2 ? C1' ADN 699 A 1 HETATM 10 N N9 ADN . . . D 4 137.039 26.115 -8.326 1 10.35 ? N9 ADN 699 A 1 HETATM 11 C C8 ADN . . . D 4 137.001 25.89 -9.66 1 10.67 ? C8 ADN 699 A 1 HETATM 12 N N7 ADN . . . D 4 136.836 26.986 -10.376 1 10.79 ? N7 ADN 699 A 1 HETATM 13 C C5 ADN . . . D 4 137.186 27.996 -9.446 1 10.12 ? C5 ADN 699 A 1 HETATM 14 C C6 ADN . . . D 4 137.113 29.39 -9.57 1 10.44 ? C6 ADN 699 A 1 HETATM 15 N N6 ADN . . . D 4 136.983 30.03 -10.744 1 11.56 ? N6 ADN 699 A 1 HETATM 16 N N1 ADN . . . D 4 137.331 30.101 -8.435 1 10.61 ? N1 ADN 699 A 1 HETATM 17 C C2 ADN . . . D 4 137.389 29.46 -7.275 1 10.47 ? C2 ADN 699 A 1 HETATM 18 N N3 ADN . . . D 4 137.335 28.152 -7.029 1 10.38 ? N3 ADN 699 A 1 HETATM 19 C C4 ADN . . . D 4 137.234 27.477 -8.165 1 10.67 ? C4 ADN 699 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #