data_1LK6 # _model_server_result.job_id CElhQmeV7m7Cc6cvC5jYlg _model_server_result.datetime_utc '2024-11-26 22:20:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":100}' # _entry.id 1LK6 # _exptl.entry_id 1LK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.44 _cell.angle_gamma 90 _cell.entry_id 1LK6 _cell.length_a 68.811 _cell.length_b 99.908 _cell.length_c 87.292 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LK6 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 L CYS 8 1_555 A SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 21 L CYS 21 1_555 A SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 247 L CYS 247 1_555 A SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 8 I CYS 8 1_555 B SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 21 I CYS 21 1_555 B SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 247 I CYS 247 1_555 B SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 C C ACE 1 C ACE 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 D C FME 1 D FME 10 1_555 D N LEU 2 D LEU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 156 n n C1 C2 GOL sing 157 n n C1 H11 GOL sing 158 n n C1 H12 GOL sing 159 n n O1 HO1 GOL sing 160 n n C2 O2 GOL sing 161 n n C2 C3 GOL sing 162 n n C2 H2 GOL sing 163 n n O2 HO2 GOL sing 164 n n C3 O3 GOL sing 165 n n C3 H31 GOL sing 166 n n C3 H32 GOL sing 167 n n O3 HO3 GOL sing 168 n n # _atom_sites.entry_id 1LK6 _atom_sites.fract_transf_matrix[1][1] 0.014533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003742 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NDG L 1 801 801 NDG NAG . F 4 NDG L 1 841 841 NDG NAG . G 4 NDG L 1 842 842 NDG NAG . H 4 NDG I 1 801 801 NDG NAG . I 5 NAG I 1 841 841 NAG NAG . J 4 NDG I 1 842 842 NDG NAG . K 5 NAG I 1 861 861 NAG NAG . L 4 NDG I 1 862 862 NDG NAG . M 6 GOL C 1 100 100 GOL GOL . N 7 HOH L 1 843 2 HOH HOH . N 7 HOH L 2 844 4 HOH HOH . N 7 HOH L 3 845 8 HOH HOH . N 7 HOH L 4 846 12 HOH HOH . N 7 HOH L 5 847 14 HOH HOH . N 7 HOH L 6 848 19 HOH HOH . N 7 HOH L 7 849 20 HOH HOH . N 7 HOH L 8 850 22 HOH HOH . N 7 HOH L 9 851 32 HOH HOH . O 7 HOH I 1 863 1 HOH HOH . O 7 HOH I 2 864 3 HOH HOH . O 7 HOH I 3 865 5 HOH HOH . O 7 HOH I 4 866 6 HOH HOH . O 7 HOH I 5 867 7 HOH HOH . O 7 HOH I 6 868 9 HOH HOH . O 7 HOH I 7 869 10 HOH HOH . O 7 HOH I 8 870 11 HOH HOH . O 7 HOH I 9 871 13 HOH HOH . O 7 HOH I 10 872 15 HOH HOH . O 7 HOH I 11 873 16 HOH HOH . O 7 HOH I 12 874 17 HOH HOH . O 7 HOH I 13 875 18 HOH HOH . O 7 HOH I 14 876 21 HOH HOH . O 7 HOH I 15 877 23 HOH HOH . O 7 HOH I 16 878 24 HOH HOH . O 7 HOH I 17 879 25 HOH HOH . O 7 HOH I 18 880 26 HOH HOH . O 7 HOH I 19 881 27 HOH HOH . O 7 HOH I 20 882 28 HOH HOH . O 7 HOH I 21 883 29 HOH HOH . O 7 HOH I 22 884 30 HOH HOH . O 7 HOH I 23 885 31 HOH HOH . O 7 HOH I 24 886 33 HOH HOH . O 7 HOH I 25 887 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 6 33.953 7.304 9.385 1 52.95 ? C1 GOL 100 C 1 HETATM 2 O O1 GOL . . . M 6 33.511 8.318 10.334 1 52.95 ? O1 GOL 100 C 1 HETATM 3 C C2 GOL . . . M 6 33.697 5.857 9.947 1 52.95 ? C2 GOL 100 C 1 HETATM 4 O O2 GOL . . . M 6 32.426 5.737 10.567 1 52.95 ? O2 GOL 100 C 1 HETATM 5 C C3 GOL . . . M 6 34.774 5.384 10.98 1 52.95 ? C3 GOL 100 C 1 HETATM 6 O O3 GOL . . . M 6 34.71 6.044 12.238 1 52.95 ? O3 GOL 100 C 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #