data_1LK6
#
_model_server_result.job_id            QOihMgjz4ge5uBlcNU_pCg 
_model_server_result.datetime_utc      '2024-11-26 22:26:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lk6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":841}' 
#
_entry.id    1LK6 
#
_exptl.entry_id    1LK6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.44 
_cell.angle_gamma         90 
_cell.entry_id            1LK6 
_cell.length_a            68.811 
_cell.length_b            99.908 
_cell.length_c            87.292 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LK6 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 L CYS 8 1_555 A SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 21 L CYS 21 1_555 A SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 247 L CYS 247 1_555 A SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 B SG CYS 8 I CYS 8 1_555 B SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 21 I CYS 21 1_555 B SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 247 I CYS 247 1_555 B SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 C C ACE 1 C ACE 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 D C FME 1 D FME 10 1_555 D N LEU 2 D LEU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 277 n n 
C1 O1 NAG sing 278 n n 
C1 O5 NAG sing 279 n n 
C1 H1 NAG sing 280 n n 
C2 C3 NAG sing 281 n n 
C2 N2 NAG sing 282 n n 
C2 H2 NAG sing 283 n n 
C3 C4 NAG sing 284 n n 
C3 O3 NAG sing 285 n n 
C3 H3 NAG sing 286 n n 
C4 C5 NAG sing 287 n n 
C4 O4 NAG sing 288 n n 
C4 H4 NAG sing 289 n n 
C5 C6 NAG sing 290 n n 
C5 O5 NAG sing 291 n n 
C5 H5 NAG sing 292 n n 
C6 O6 NAG sing 293 n n 
C6 H61 NAG sing 294 n n 
C6 H62 NAG sing 295 n n 
C7 C8 NAG sing 296 n n 
C7 N2 NAG sing 297 n n 
C7 O7 NAG doub 298 n n 
C8 H81 NAG sing 299 n n 
C8 H82 NAG sing 300 n n 
C8 H83 NAG sing 301 n n 
N2 HN2 NAG sing 302 n n 
O1 HO1 NAG sing 303 n n 
O3 HO3 NAG sing 304 n n 
O4 HO4 NAG sing 305 n n 
O6 HO6 NAG sing 306 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1LK6 
_atom_sites.fract_transf_matrix[1][1]    0.014533 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003742 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 NDG L 1 801 801 NDG NAG . 
F 4 NDG L 1 841 841 NDG NAG . 
G 4 NDG L 1 842 842 NDG NAG . 
H 4 NDG I 1 801 801 NDG NAG . 
I 5 NAG I 1 841 841 NAG NAG . 
J 4 NDG I 1 842 842 NDG NAG . 
K 5 NAG I 1 861 861 NAG NAG . 
L 4 NDG I 1 862 862 NDG NAG . 
M 6 GOL C 1 100 100 GOL GOL . 
N 7 HOH L 1 843 2 HOH HOH . 
N 7 HOH L 2 844 4 HOH HOH . 
N 7 HOH L 3 845 8 HOH HOH . 
N 7 HOH L 4 846 12 HOH HOH . 
N 7 HOH L 5 847 14 HOH HOH . 
N 7 HOH L 6 848 19 HOH HOH . 
N 7 HOH L 7 849 20 HOH HOH . 
N 7 HOH L 8 850 22 HOH HOH . 
N 7 HOH L 9 851 32 HOH HOH . 
O 7 HOH I 1 863 1 HOH HOH . 
O 7 HOH I 2 864 3 HOH HOH . 
O 7 HOH I 3 865 5 HOH HOH . 
O 7 HOH I 4 866 6 HOH HOH . 
O 7 HOH I 5 867 7 HOH HOH . 
O 7 HOH I 6 868 9 HOH HOH . 
O 7 HOH I 7 869 10 HOH HOH . 
O 7 HOH I 8 870 11 HOH HOH . 
O 7 HOH I 9 871 13 HOH HOH . 
O 7 HOH I 10 872 15 HOH HOH . 
O 7 HOH I 11 873 16 HOH HOH . 
O 7 HOH I 12 874 17 HOH HOH . 
O 7 HOH I 13 875 18 HOH HOH . 
O 7 HOH I 14 876 21 HOH HOH . 
O 7 HOH I 15 877 23 HOH HOH . 
O 7 HOH I 16 878 24 HOH HOH . 
O 7 HOH I 17 879 25 HOH HOH . 
O 7 HOH I 18 880 26 HOH HOH . 
O 7 HOH I 19 881 27 HOH HOH . 
O 7 HOH I 20 882 28 HOH HOH . 
O 7 HOH I 21 883 29 HOH HOH . 
O 7 HOH I 22 884 30 HOH HOH . 
O 7 HOH I 23 885 31 HOH HOH . 
O 7 HOH I 24 886 33 HOH HOH . 
O 7 HOH I 25 887 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 5 55.684 17.629 7.751 1 66.75 ? C1 NAG 841 I 1 
HETATM 2 C C2 NAG . . . I 5 56.967 17.832 8.56 1 66.75 ? C2 NAG 841 I 1 
HETATM 3 C C3 NAG . . . I 5 58.186 17.415 7.725 1 66.75 ? C3 NAG 841 I 1 
HETATM 4 C C4 NAG . . . I 5 58.003 16.03 7.099 1 66.75 ? C4 NAG 841 I 1 
HETATM 5 C C5 NAG . . . I 5 56.66 15.933 6.386 1 66.75 ? C5 NAG 841 I 1 
HETATM 6 C C6 NAG . . . I 5 56.386 14.533 5.874 1 66.75 ? C6 NAG 841 I 1 
HETATM 7 C C7 NAG . . . I 5 56.207 19.812 9.748 1 66.75 ? C7 NAG 841 I 1 
HETATM 8 C C8 NAG . . . I 5 55.275 20.846 9.116 1 66.75 ? C8 NAG 841 I 1 
HETATM 9 N N2 NAG . . . I 5 57.102 19.228 8.951 1 66.75 ? N2 NAG 841 I 1 
HETATM 10 O O1 NAG . . . I 5 54.589 17.877 8.559 1 66.75 ? O1 NAG 841 I 1 
HETATM 11 O O3 NAG . . . I 5 59.346 17.401 8.548 1 66.75 ? O3 NAG 841 I 1 
HETATM 12 O O4 NAG . . . I 5 59.046 15.803 6.168 1 66.75 ? O4 NAG 841 I 1 
HETATM 13 O O5 NAG . . . I 5 55.599 16.273 7.297 1 66.75 ? O5 NAG 841 I 1 
HETATM 14 O O6 NAG . . . I 5 55.131 14.051 6.328 1 66.75 ? O6 NAG 841 I 1 
HETATM 15 O O7 NAG . . . I 5 56.113 19.553 10.95 1 66.75 ? O7 NAG 841 I 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#