data_1LKC
#
_model_server_result.job_id            0whlxm6uf77DnkvOSpG0CQ 
_model_server_result.datetime_utc      '2024-11-15 04:55:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":800}' 
#
_entry.id    1LKC 
#
_exptl.entry_id    1LKC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LKC 
_cell.length_a            67.96 
_cell.length_b            101.55 
_cell.length_c            117.23 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.96 0 117.23 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PLP 
_struct_conn.ptnr2_auth_seq_id              800 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.31 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     1LKC 
_atom_sites.fract_transf_matrix[1][1]    0.014715 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00853 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 700 700 PO4 PO4 . 
C 3 PLP A 1 800 800 PLP PLP . 
D 4 EDO A 1 701 701 EDO EG . 
E 4 EDO A 1 702 702 EDO EG . 
F 5 HOH A 1 801 801 HOH HOH . 
F 5 HOH A 2 802 802 HOH HOH . 
F 5 HOH A 3 803 803 HOH HOH . 
F 5 HOH A 4 804 804 HOH HOH . 
F 5 HOH A 5 805 805 HOH HOH . 
F 5 HOH A 6 806 806 HOH HOH . 
F 5 HOH A 7 808 808 HOH HOH . 
F 5 HOH A 8 809 809 HOH HOH . 
F 5 HOH A 9 810 810 HOH HOH . 
F 5 HOH A 10 811 811 HOH HOH . 
F 5 HOH A 11 812 812 HOH HOH . 
F 5 HOH A 12 813 813 HOH HOH . 
F 5 HOH A 13 814 814 HOH HOH . 
F 5 HOH A 14 816 816 HOH HOH . 
F 5 HOH A 15 817 817 HOH HOH . 
F 5 HOH A 16 819 819 HOH HOH . 
F 5 HOH A 17 820 820 HOH HOH . 
F 5 HOH A 18 821 821 HOH HOH . 
F 5 HOH A 19 822 822 HOH HOH . 
F 5 HOH A 20 823 823 HOH HOH . 
F 5 HOH A 21 824 824 HOH HOH . 
F 5 HOH A 22 825 825 HOH HOH . 
F 5 HOH A 23 826 826 HOH HOH . 
F 5 HOH A 24 827 827 HOH HOH . 
F 5 HOH A 25 828 828 HOH HOH . 
F 5 HOH A 26 829 829 HOH HOH . 
F 5 HOH A 27 830 830 HOH HOH . 
F 5 HOH A 28 831 831 HOH HOH . 
F 5 HOH A 29 832 832 HOH HOH . 
F 5 HOH A 30 833 833 HOH HOH . 
F 5 HOH A 31 835 835 HOH HOH . 
F 5 HOH A 32 836 836 HOH HOH . 
F 5 HOH A 33 837 837 HOH HOH . 
F 5 HOH A 34 838 838 HOH HOH . 
F 5 HOH A 35 839 839 HOH HOH . 
F 5 HOH A 36 840 840 HOH HOH . 
F 5 HOH A 37 842 842 HOH HOH . 
F 5 HOH A 38 843 843 HOH HOH . 
F 5 HOH A 39 844 844 HOH HOH . 
F 5 HOH A 40 845 845 HOH HOH . 
F 5 HOH A 41 846 846 HOH HOH . 
F 5 HOH A 42 847 847 HOH HOH . 
F 5 HOH A 43 848 848 HOH HOH . 
F 5 HOH A 44 849 849 HOH HOH . 
F 5 HOH A 45 850 850 HOH HOH . 
F 5 HOH A 46 851 851 HOH HOH . 
F 5 HOH A 47 852 852 HOH HOH . 
F 5 HOH A 48 853 853 HOH HOH . 
F 5 HOH A 49 854 854 HOH HOH . 
F 5 HOH A 50 855 855 HOH HOH . 
F 5 HOH A 51 856 856 HOH HOH . 
F 5 HOH A 52 857 857 HOH HOH . 
F 5 HOH A 53 858 858 HOH HOH . 
F 5 HOH A 54 859 859 HOH HOH . 
F 5 HOH A 55 860 860 HOH HOH . 
F 5 HOH A 56 861 861 HOH HOH . 
F 5 HOH A 57 862 862 HOH HOH . 
F 5 HOH A 58 863 863 HOH HOH . 
F 5 HOH A 59 864 864 HOH HOH . 
F 5 HOH A 60 865 865 HOH HOH . 
F 5 HOH A 61 866 866 HOH HOH . 
F 5 HOH A 62 867 867 HOH HOH . 
F 5 HOH A 63 868 868 HOH HOH . 
F 5 HOH A 64 869 869 HOH HOH . 
F 5 HOH A 65 870 870 HOH HOH . 
F 5 HOH A 66 871 871 HOH HOH . 
F 5 HOH A 67 872 872 HOH HOH . 
F 5 HOH A 68 873 873 HOH HOH . 
F 5 HOH A 69 874 874 HOH HOH . 
F 5 HOH A 70 875 875 HOH HOH . 
F 5 HOH A 71 876 876 HOH HOH . 
F 5 HOH A 72 877 877 HOH HOH . 
F 5 HOH A 73 878 878 HOH HOH . 
F 5 HOH A 74 879 879 HOH HOH . 
F 5 HOH A 75 880 880 HOH HOH . 
F 5 HOH A 76 881 881 HOH HOH . 
F 5 HOH A 77 882 882 HOH HOH . 
F 5 HOH A 78 883 883 HOH HOH . 
F 5 HOH A 79 884 884 HOH HOH . 
F 5 HOH A 80 885 885 HOH HOH . 
F 5 HOH A 81 886 886 HOH HOH . 
F 5 HOH A 82 887 887 HOH HOH . 
F 5 HOH A 83 888 888 HOH HOH . 
F 5 HOH A 84 889 889 HOH HOH . 
F 5 HOH A 85 890 890 HOH HOH . 
F 5 HOH A 86 891 891 HOH HOH . 
F 5 HOH A 87 892 892 HOH HOH . 
F 5 HOH A 88 893 893 HOH HOH . 
F 5 HOH A 89 894 894 HOH HOH . 
F 5 HOH A 90 895 895 HOH HOH . 
F 5 HOH A 91 896 896 HOH HOH . 
F 5 HOH A 92 897 897 HOH HOH . 
F 5 HOH A 93 898 898 HOH HOH . 
F 5 HOH A 94 899 899 HOH HOH . 
F 5 HOH A 95 900 900 HOH HOH . 
F 5 HOH A 96 901 901 HOH HOH . 
F 5 HOH A 97 902 902 HOH HOH . 
F 5 HOH A 98 903 903 HOH HOH . 
F 5 HOH A 99 904 904 HOH HOH . 
F 5 HOH A 100 905 905 HOH HOH . 
F 5 HOH A 101 906 906 HOH HOH . 
F 5 HOH A 102 907 907 HOH HOH . 
F 5 HOH A 103 908 908 HOH HOH . 
F 5 HOH A 104 909 909 HOH HOH . 
F 5 HOH A 105 910 910 HOH HOH . 
F 5 HOH A 106 911 911 HOH HOH . 
F 5 HOH A 107 912 912 HOH HOH . 
F 5 HOH A 108 913 913 HOH HOH . 
F 5 HOH A 109 914 914 HOH HOH . 
F 5 HOH A 110 915 915 HOH HOH . 
F 5 HOH A 111 916 916 HOH HOH . 
F 5 HOH A 112 917 917 HOH HOH . 
F 5 HOH A 113 918 918 HOH HOH . 
F 5 HOH A 114 919 919 HOH HOH . 
F 5 HOH A 115 920 920 HOH HOH . 
F 5 HOH A 116 921 921 HOH HOH . 
F 5 HOH A 117 922 922 HOH HOH . 
F 5 HOH A 118 923 923 HOH HOH . 
F 5 HOH A 119 924 924 HOH HOH . 
F 5 HOH A 120 925 925 HOH HOH . 
F 5 HOH A 121 926 926 HOH HOH . 
F 5 HOH A 122 927 927 HOH HOH . 
F 5 HOH A 123 928 928 HOH HOH . 
F 5 HOH A 124 929 929 HOH HOH . 
F 5 HOH A 125 930 930 HOH HOH . 
F 5 HOH A 126 931 931 HOH HOH . 
F 5 HOH A 127 933 933 HOH HOH . 
F 5 HOH A 128 934 934 HOH HOH . 
F 5 HOH A 129 935 935 HOH HOH . 
F 5 HOH A 130 936 936 HOH HOH . 
F 5 HOH A 131 937 937 HOH HOH . 
F 5 HOH A 132 938 938 HOH HOH . 
F 5 HOH A 133 939 939 HOH HOH . 
F 5 HOH A 134 940 940 HOH HOH . 
F 5 HOH A 135 941 941 HOH HOH . 
F 5 HOH A 136 942 942 HOH HOH . 
F 5 HOH A 137 943 943 HOH HOH . 
F 5 HOH A 138 944 944 HOH HOH . 
F 5 HOH A 139 945 945 HOH HOH . 
F 5 HOH A 140 946 946 HOH HOH . 
F 5 HOH A 141 947 947 HOH HOH . 
F 5 HOH A 142 948 948 HOH HOH . 
F 5 HOH A 143 949 949 HOH HOH . 
F 5 HOH A 144 950 950 HOH HOH . 
F 5 HOH A 145 951 951 HOH HOH . 
F 5 HOH A 146 952 952 HOH HOH . 
F 5 HOH A 147 953 953 HOH HOH . 
F 5 HOH A 148 954 954 HOH HOH . 
F 5 HOH A 149 955 955 HOH HOH . 
F 5 HOH A 150 956 956 HOH HOH . 
F 5 HOH A 151 957 957 HOH HOH . 
F 5 HOH A 152 958 958 HOH HOH . 
F 5 HOH A 153 959 959 HOH HOH . 
F 5 HOH A 154 960 960 HOH HOH . 
F 5 HOH A 155 961 961 HOH HOH . 
F 5 HOH A 156 962 962 HOH HOH . 
F 5 HOH A 157 963 963 HOH HOH . 
F 5 HOH A 158 964 964 HOH HOH . 
F 5 HOH A 159 1200 1200 HOH HOH . 
F 5 HOH A 160 1201 1201 HOH HOH . 
F 5 HOH A 161 1202 1202 HOH HOH . 
F 5 HOH A 162 1203 1203 HOH HOH . 
F 5 HOH A 163 1204 1204 HOH HOH . 
F 5 HOH A 164 1206 1206 HOH HOH . 
F 5 HOH A 165 1207 1207 HOH HOH . 
F 5 HOH A 166 1210 1210 HOH HOH . 
F 5 HOH A 167 1211 1211 HOH HOH . 
F 5 HOH A 168 1212 1212 HOH HOH . 
F 5 HOH A 169 1213 1213 HOH HOH . 
F 5 HOH A 170 1214 1214 HOH HOH . 
F 5 HOH A 171 1215 1215 HOH HOH . 
F 5 HOH A 172 1250 1250 HOH HOH . 
F 5 HOH A 173 1301 1301 HOH HOH . 
F 5 HOH A 174 1302 1302 HOH HOH . 
F 5 HOH A 175 1303 1303 HOH HOH . 
F 5 HOH A 176 1306 1306 HOH HOH . 
F 5 HOH A 177 1307 1307 HOH HOH . 
F 5 HOH A 178 1308 1308 HOH HOH . 
F 5 HOH A 179 1309 1309 HOH HOH . 
F 5 HOH A 180 1310 1310 HOH HOH . 
F 5 HOH A 181 1311 1311 HOH HOH . 
F 5 HOH A 182 1312 1312 HOH HOH . 
F 5 HOH A 183 1313 1313 HOH HOH . 
F 5 HOH A 184 1315 1315 HOH HOH . 
F 5 HOH A 185 1316 1316 HOH HOH . 
F 5 HOH A 186 1317 1317 HOH HOH . 
F 5 HOH A 187 1319 1319 HOH HOH . 
F 5 HOH A 188 1320 1320 HOH HOH . 
F 5 HOH A 189 1321 1321 HOH HOH . 
F 5 HOH A 190 1323 1323 HOH HOH . 
F 5 HOH A 191 1324 1324 HOH HOH . 
F 5 HOH A 192 1325 1325 HOH HOH . 
F 5 HOH A 193 1326 1326 HOH HOH . 
F 5 HOH A 194 1327 1327 HOH HOH . 
F 5 HOH A 195 1328 1328 HOH HOH . 
F 5 HOH A 196 1329 1329 HOH HOH . 
F 5 HOH A 197 1330 1330 HOH HOH . 
F 5 HOH A 198 1331 1331 HOH HOH . 
F 5 HOH A 199 1332 1332 HOH HOH . 
F 5 HOH A 200 1333 1333 HOH HOH . 
F 5 HOH A 201 1334 1334 HOH HOH . 
F 5 HOH A 202 1335 1335 HOH HOH . 
F 5 HOH A 203 1336 1336 HOH HOH . 
F 5 HOH A 204 1337 1337 HOH HOH . 
F 5 HOH A 205 1338 1338 HOH HOH . 
F 5 HOH A 206 1339 1339 HOH HOH . 
F 5 HOH A 207 1340 1340 HOH HOH . 
F 5 HOH A 208 1341 1341 HOH HOH . 
F 5 HOH A 209 1342 1342 HOH HOH . 
F 5 HOH A 210 1343 1343 HOH HOH . 
F 5 HOH A 211 1345 1345 HOH HOH . 
F 5 HOH A 212 1346 1346 HOH HOH . 
F 5 HOH A 213 1347 1347 HOH HOH . 
F 5 HOH A 214 1348 1348 HOH HOH . 
F 5 HOH A 215 1349 1349 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 3 23.519 29.948 69.982 1 22.64 ? N1 PLP 800 A 1 
HETATM 2 C C2 PLP . . . C 3 23.191 29.428 71.183 1 24.36 ? C2 PLP 800 A 1 
HETATM 3 C C2A PLP . . . C 3 22.155 30.059 72.022 1 23.67 ? C2A PLP 800 A 1 
HETATM 4 C C3 PLP . . . C 3 23.907 28.24 71.558 1 25.9 ? C3 PLP 800 A 1 
HETATM 5 O O3 PLP . . . C 3 23.639 27.697 72.695 1 27.28 ? O3 PLP 800 A 1 
HETATM 6 C C4 PLP . . . C 3 24.879 27.707 70.675 1 30.22 ? C4 PLP 800 A 1 
HETATM 7 C C4A PLP . . . C 3 25.562 26.458 71.117 1 42.21 ? C4A PLP 800 A 1 
HETATM 8 C C5 PLP . . . C 3 25.158 28.327 69.445 1 23.73 ? C5 PLP 800 A 1 
HETATM 9 C C6 PLP . . . C 3 24.45 29.479 69.097 1 20.89 ? C6 PLP 800 A 1 
HETATM 10 C C5A PLP . . . C 3 26.142 27.877 68.42 1 21.78 ? C5A PLP 800 A 1 
HETATM 11 O O4P PLP . . . C 3 25.93 26.507 67.957 1 19.56 ? O4P PLP 800 A 1 
HETATM 12 P P PLP . . . C 3 26.837 25.845 66.826 1 17.94 ? P PLP 800 A 1 
HETATM 13 O O1P PLP . . . C 3 25.835 25.229 65.82 1 16.94 ? O1P PLP 800 A 1 
HETATM 14 O O2P PLP . . . C 3 27.653 24.66 67.482 1 21.04 ? O2P PLP 800 A 1 
HETATM 15 O O3P PLP . . . C 3 27.828 26.954 66.357 1 17.93 ? O3P PLP 800 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#