data_1LKE # _model_server_result.job_id T9lzOFwvMuN5JPe7XMKBHA _model_server_result.datetime_utc '2024-12-01 14:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1LKE # _exptl.entry_id 1LKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGOXIGENIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.53 _cell.angle_gamma 90 _cell.entry_id 1LKE _cell.length_a 75.052 _cell.length_b 63.988 _cell.length_c 39.452 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 8 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 8 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 115 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 115 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H34 O5' _chem_comp.formula_weight 390.513 _chem_comp.id DOG _chem_comp.mon_nstd_flag . _chem_comp.name DIGOXIGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3,12,14-TRIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C23 DOG doub 83 n n C23 C22 DOG sing 84 n n C23 O21 DOG sing 85 n n C22 C20 DOG doub 86 n n C22 H22 DOG sing 87 n n O21 C21 DOG sing 88 n n C21 C20 DOG sing 89 n n C21 H211 DOG sing 90 n n C21 H212 DOG sing 91 n n C20 C17 DOG sing 92 n n C17 C16 DOG sing 93 n n C17 C13 DOG sing 94 n n C17 H17 DOG sing 95 n n C16 C15 DOG sing 96 n n C16 H161 DOG sing 97 n n C16 H162 DOG sing 98 n n C13 C18 DOG sing 99 n n C13 C12 DOG sing 100 n n C13 C14 DOG sing 101 n n C18 H181 DOG sing 102 n n C18 H182 DOG sing 103 n n C18 H183 DOG sing 104 n n C12 O12 DOG sing 105 n n C12 C11 DOG sing 106 n n C12 H12 DOG sing 107 n n O12 H12O DOG sing 108 n n C14 C15 DOG sing 109 n n C14 O14 DOG sing 110 n n C14 C8 DOG sing 111 n n C15 H151 DOG sing 112 n n C15 H152 DOG sing 113 n n O14 H14O DOG sing 114 n n C8 C7 DOG sing 115 n n C8 C9 DOG sing 116 n n C8 HC8 DOG sing 117 n n C7 C6 DOG sing 118 n n C7 HC71 DOG sing 119 n n C7 HC72 DOG sing 120 n n C9 C11 DOG sing 121 n n C9 C10 DOG sing 122 n n C9 HC9 DOG sing 123 n n C11 H111 DOG sing 124 n n C11 H112 DOG sing 125 n n C10 C19 DOG sing 126 n n C10 C5 DOG sing 127 n n C10 C1 DOG sing 128 n n C19 H191 DOG sing 129 n n C19 H192 DOG sing 130 n n C19 H193 DOG sing 131 n n C5 C6 DOG sing 132 n n C5 C4 DOG sing 133 n n C5 HC5 DOG sing 134 n n C6 HC61 DOG sing 135 n n C6 HC62 DOG sing 136 n n C4 C3 DOG sing 137 n n C4 HC41 DOG sing 138 n n C4 HC42 DOG sing 139 n n C3 O32 DOG sing 140 n n C3 C2 DOG sing 141 n n C3 HC3 DOG sing 142 n n O32 H32O DOG sing 143 n n C2 C1 DOG sing 144 n n C2 HC21 DOG sing 145 n n C2 HC22 DOG sing 146 n n C1 HC11 DOG sing 147 n n C1 HC12 DOG sing 148 n n # _atom_sites.entry_id 1LKE _atom_sites.fract_transf_matrix[1][1] 0.013324 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000355 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DOG A 1 500 700 DOG DOG . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . C 3 HOH A 58 558 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 DOG . . . B 2 15.265 -21.277 37.453 1 26.32 ? O23 DOG 500 A 1 HETATM 2 C C23 DOG . . . B 2 14.603 -22.272 37.461 1 27.54 ? C23 DOG 500 A 1 HETATM 3 C C22 DOG . . . B 2 13.471 -22.625 36.641 1 19.65 ? C22 DOG 500 A 1 HETATM 4 O O21 DOG . . . B 2 14.839 -23.306 38.292 1 25.36 ? O21 DOG 500 A 1 HETATM 5 C C21 DOG . . . B 2 13.916 -24.395 38.048 1 20.2 ? C21 DOG 500 A 1 HETATM 6 C C20 DOG . . . B 2 13.062 -23.854 36.979 1 20.84 ? C20 DOG 500 A 1 HETATM 7 C C17 DOG . . . B 2 11.926 -24.64 36.459 1 18.06 ? C17 DOG 500 A 1 HETATM 8 C C16 DOG . . . B 2 12.13 -26.183 36.378 1 18.77 ? C16 DOG 500 A 1 HETATM 9 C C13 DOG . . . B 2 10.551 -24.433 37.217 1 19.5 ? C13 DOG 500 A 1 HETATM 10 C C18 DOG . . . B 2 10.542 -23.257 38.19 1 16.97 ? C18 DOG 500 A 1 HETATM 11 C C12 DOG . . . B 2 9.47 -24.215 36.129 1 17.64 ? C12 DOG 500 A 1 HETATM 12 O O12 DOG . . . B 2 9.608 -22.895 35.544 1 19.87 ? O12 DOG 500 A 1 HETATM 13 C C14 DOG . . . B 2 10.304 -25.799 37.919 1 17.46 ? C14 DOG 500 A 1 HETATM 14 C C15 DOG . . . B 2 10.839 -26.823 36.902 1 18.9 ? C15 DOG 500 A 1 HETATM 15 O O14 DOG . . . B 2 11.212 -25.932 39.041 1 17.39 ? O14 DOG 500 A 1 HETATM 16 C C8 DOG . . . B 2 8.845 -26.009 38.357 1 15.94 ? C8 DOG 500 A 1 HETATM 17 C C7 DOG . . . B 2 8.622 -27.428 38.886 1 18.7 ? C7 DOG 500 A 1 HETATM 18 C C9 DOG . . . B 2 7.783 -25.675 37.284 1 16.67 ? C9 DOG 500 A 1 HETATM 19 C C11 DOG . . . B 2 8.068 -24.271 36.652 1 19.2 ? C11 DOG 500 A 1 HETATM 20 C C10 DOG . . . B 2 6.347 -25.809 37.86 1 19.42 ? C10 DOG 500 A 1 HETATM 21 C C19 DOG . . . B 2 6.09 -24.776 38.99 1 21.15 ? C19 DOG 500 A 1 HETATM 22 C C5 DOG . . . B 2 6.119 -27.255 38.396 1 20.76 ? C5 DOG 500 A 1 HETATM 23 C C6 DOG . . . B 2 7.212 -27.655 39.411 1 23.39 ? C6 DOG 500 A 1 HETATM 24 C C4 DOG . . . B 2 6.088 -28.318 37.277 1 23.41 ? C4 DOG 500 A 1 HETATM 25 C C3 DOG . . . B 2 5.073 -27.962 36.189 1 31.88 ? C3 DOG 500 A 1 HETATM 26 O O32 DOG . . . B 2 3.766 -28.098 36.746 1 31.95 ? O32 DOG 500 A 1 HETATM 27 C C2 DOG . . . B 2 5.289 -26.58 35.648 1 28.05 ? C2 DOG 500 A 1 HETATM 28 C C1 DOG . . . B 2 5.275 -25.56 36.767 1 26.08 ? C1 DOG 500 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #