data_1LKM # _model_server_result.job_id 9JhwcPrhKPhHmkHrCCyHTw _model_server_result.datetime_utc '2025-03-06 03:40:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1LKM # _exptl.entry_id 1LKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LKM _cell.length_a 48.877 _cell.length_b 80.609 _cell.length_c 100.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 48.877 0 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 48.877 0 100.084 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 100.084 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 20 A GLU 20 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A OE2 GLU 20 A GLU 20 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 A OE2 GLU 53 A GLU 53 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 A OE1 GLU 53 A GLU 53 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 A OE1 GLU 94 A GLU 94 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 A OE2 GLU 94 A GLU 94 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc7 A OE1 GLU 97 A GLU 97 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc8 A OE1 GLU 128 A GLU 128 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 A OE2 GLU 128 A GLU 128 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc10 A ND1 HIS 131 A HIS 131 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc11 A SG CYS 158 A CYS 158 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc12 A SG CYS 161 A CYS 161 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc13 A SG CYS 174 A CYS 174 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc14 A SG CYS 177 A CYS 177 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc15 B FE FE . A FE 600 1_555 E O HOH . A HOH 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc16 C FE FE . A FE 601 1_555 E O HOH . A HOH 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LKM _atom_sites.fract_transf_matrix[1][1] 0.02046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 600 600 FE FE+3 . C 2 FE A 1 601 601 FE FE+3 . D 2 FE A 1 401 401 FE FE+3 . E 3 HOH A 1 1001 1001 HOH TIP . E 3 HOH A 2 1002 1002 HOH TIP . E 3 HOH A 3 1003 1003 HOH TIP . E 3 HOH A 4 1004 1004 HOH TIP . E 3 HOH A 5 1005 1005 HOH TIP . E 3 HOH A 6 1006 1006 HOH TIP . E 3 HOH A 7 1007 1007 HOH TIP . E 3 HOH A 8 1008 1008 HOH TIP . E 3 HOH A 9 1009 1009 HOH TIP . E 3 HOH A 10 1010 1010 HOH TIP . E 3 HOH A 11 1011 1011 HOH TIP . E 3 HOH A 12 1012 1012 HOH TIP . E 3 HOH A 13 1013 1013 HOH TIP . E 3 HOH A 14 1014 1014 HOH TIP . E 3 HOH A 15 1015 1015 HOH TIP . E 3 HOH A 16 1016 1016 HOH TIP . E 3 HOH A 17 1017 1017 HOH TIP . E 3 HOH A 18 1018 1018 HOH TIP . E 3 HOH A 19 1019 1019 HOH TIP . E 3 HOH A 20 1020 1020 HOH TIP . E 3 HOH A 21 1021 1021 HOH TIP . E 3 HOH A 22 1022 1022 HOH TIP . E 3 HOH A 23 1023 1023 HOH TIP . E 3 HOH A 24 1024 1024 HOH TIP . E 3 HOH A 25 1025 1025 HOH TIP . E 3 HOH A 26 1026 1026 HOH TIP . E 3 HOH A 27 1027 1027 HOH TIP . E 3 HOH A 28 1028 1028 HOH TIP . E 3 HOH A 29 1029 1029 HOH TIP . E 3 HOH A 30 1030 1030 HOH TIP . E 3 HOH A 31 1031 1031 HOH TIP . E 3 HOH A 32 1032 1032 HOH TIP . E 3 HOH A 33 1033 1033 HOH TIP . E 3 HOH A 34 1034 1034 HOH TIP . E 3 HOH A 35 1035 1035 HOH TIP . E 3 HOH A 36 1036 1036 HOH TIP . E 3 HOH A 37 1037 1037 HOH TIP . E 3 HOH A 38 1039 1039 HOH TIP . E 3 HOH A 39 1040 1040 HOH TIP . E 3 HOH A 40 1041 1041 HOH TIP . E 3 HOH A 41 1042 1042 HOH TIP . E 3 HOH A 42 1043 1043 HOH TIP . E 3 HOH A 43 1044 1044 HOH TIP . E 3 HOH A 44 1045 1045 HOH TIP . E 3 HOH A 45 1046 1046 HOH TIP . E 3 HOH A 46 1047 1047 HOH TIP . E 3 HOH A 47 1048 1048 HOH TIP . E 3 HOH A 48 1049 1049 HOH TIP . E 3 HOH A 49 1050 1050 HOH TIP . E 3 HOH A 50 1051 1051 HOH TIP . E 3 HOH A 51 1052 1052 HOH TIP . E 3 HOH A 52 1053 1053 HOH TIP . E 3 HOH A 53 1054 1054 HOH TIP . E 3 HOH A 54 1055 1055 HOH TIP . E 3 HOH A 55 1056 1056 HOH TIP . E 3 HOH A 56 1057 1057 HOH TIP . E 3 HOH A 57 1058 1058 HOH TIP . E 3 HOH A 58 1059 1059 HOH TIP . E 3 HOH A 59 1060 1060 HOH TIP . E 3 HOH A 60 1061 1061 HOH TIP . E 3 HOH A 61 1062 1062 HOH TIP . E 3 HOH A 62 1063 1063 HOH TIP . E 3 HOH A 63 1064 1064 HOH TIP . E 3 HOH A 64 1065 1065 HOH TIP . E 3 HOH A 65 1066 1066 HOH TIP . E 3 HOH A 66 1067 1067 HOH TIP . E 3 HOH A 67 1068 1068 HOH TIP . E 3 HOH A 68 1069 1069 HOH TIP . E 3 HOH A 69 1070 1070 HOH TIP . E 3 HOH A 70 1071 1071 HOH TIP . E 3 HOH A 71 1072 1072 HOH TIP . E 3 HOH A 72 1073 1073 HOH TIP . E 3 HOH A 73 1074 1074 HOH TIP . E 3 HOH A 74 1075 1075 HOH TIP . E 3 HOH A 75 1076 1076 HOH TIP . E 3 HOH A 76 1077 1077 HOH TIP . E 3 HOH A 77 1078 1078 HOH TIP . E 3 HOH A 78 1079 1079 HOH TIP . E 3 HOH A 79 1080 1080 HOH TIP . E 3 HOH A 80 1081 1081 HOH TIP . E 3 HOH A 81 1082 1082 HOH TIP . E 3 HOH A 82 1083 1083 HOH TIP . E 3 HOH A 83 1084 1084 HOH TIP . E 3 HOH A 84 1085 1085 HOH TIP . E 3 HOH A 85 1086 1086 HOH TIP . E 3 HOH A 86 1087 1087 HOH TIP . E 3 HOH A 87 1088 1088 HOH TIP . E 3 HOH A 88 1089 1089 HOH TIP . E 3 HOH A 89 1090 1090 HOH TIP . E 3 HOH A 90 1091 1091 HOH TIP . E 3 HOH A 91 1092 1092 HOH TIP . E 3 HOH A 92 1093 1093 HOH TIP . E 3 HOH A 93 1094 1094 HOH TIP . E 3 HOH A 94 1095 1095 HOH TIP . E 3 HOH A 95 1096 1096 HOH TIP . E 3 HOH A 96 1097 1097 HOH TIP . E 3 HOH A 97 1098 1098 HOH TIP . E 3 HOH A 98 1099 1099 HOH TIP . E 3 HOH A 99 1100 1100 HOH TIP . E 3 HOH A 100 1101 1101 HOH TIP . E 3 HOH A 101 1102 1102 HOH TIP . E 3 HOH A 102 1103 1103 HOH TIP . E 3 HOH A 103 1104 1104 HOH TIP . E 3 HOH A 104 1105 1105 HOH TIP . E 3 HOH A 105 1106 1106 HOH TIP . E 3 HOH A 106 1107 1107 HOH TIP . E 3 HOH A 107 1108 1108 HOH TIP . E 3 HOH A 108 1109 1109 HOH TIP . E 3 HOH A 109 1110 1110 HOH TIP . E 3 HOH A 110 1111 1111 HOH TIP . E 3 HOH A 111 1112 1112 HOH TIP . E 3 HOH A 112 1113 1113 HOH TIP . E 3 HOH A 113 1114 1114 HOH TIP . E 3 HOH A 114 1115 1115 HOH TIP . E 3 HOH A 115 1116 1116 HOH TIP . E 3 HOH A 116 1117 1117 HOH TIP . E 3 HOH A 117 1118 1118 HOH TIP . E 3 HOH A 118 1119 1119 HOH TIP . E 3 HOH A 119 1120 1120 HOH TIP . E 3 HOH A 120 1121 1121 HOH TIP . E 3 HOH A 121 1122 1122 HOH TIP . E 3 HOH A 122 1123 1123 HOH TIP . E 3 HOH A 123 1124 1124 HOH TIP . E 3 HOH A 124 1125 1125 HOH TIP . E 3 HOH A 125 1126 1126 HOH TIP . E 3 HOH A 126 1127 1127 HOH TIP . E 3 HOH A 127 1128 1128 HOH TIP . E 3 HOH A 128 1129 1129 HOH TIP . E 3 HOH A 129 1130 1130 HOH TIP . E 3 HOH A 130 1131 1131 HOH TIP . E 3 HOH A 131 1132 1132 HOH TIP . E 3 HOH A 132 1133 1133 HOH TIP . E 3 HOH A 133 1134 1134 HOH TIP . E 3 HOH A 134 1135 1135 HOH TIP . E 3 HOH A 135 1136 1136 HOH TIP . E 3 HOH A 136 1137 1137 HOH TIP . E 3 HOH A 137 1138 1138 HOH TIP . E 3 HOH A 138 1139 1139 HOH TIP . E 3 HOH A 139 1140 1140 HOH TIP . E 3 HOH A 140 1141 1141 HOH TIP . E 3 HOH A 141 1142 1142 HOH TIP . E 3 HOH A 142 1143 1143 HOH TIP . E 3 HOH A 143 1144 1144 HOH TIP . E 3 HOH A 144 1145 1145 HOH TIP . E 3 HOH A 145 1146 1146 HOH TIP . E 3 HOH A 146 1147 1147 HOH TIP . E 3 HOH A 147 1148 1148 HOH TIP . E 3 HOH A 148 1149 1149 HOH TIP . E 3 HOH A 149 1150 1150 HOH TIP . E 3 HOH A 150 1151 1151 HOH TIP . E 3 HOH A 151 1152 1152 HOH TIP . E 3 HOH A 152 1153 1153 HOH TIP . E 3 HOH A 153 1154 1154 HOH TIP . E 3 HOH A 154 1155 1155 HOH TIP . E 3 HOH A 155 1157 1157 HOH TIP . E 3 HOH A 156 1158 1158 HOH TIP . E 3 HOH A 157 1159 1159 HOH TIP . E 3 HOH A 158 1160 1160 HOH TIP . E 3 HOH A 159 1161 1161 HOH TIP . E 3 HOH A 160 1162 1162 HOH TIP . E 3 HOH A 161 1163 1163 HOH TIP . E 3 HOH A 162 1164 1164 HOH TIP . E 3 HOH A 163 1165 1165 HOH TIP . E 3 HOH A 164 1166 1166 HOH TIP . E 3 HOH A 165 1167 1167 HOH TIP . E 3 HOH A 166 1168 1168 HOH TIP . E 3 HOH A 167 1169 1169 HOH TIP . E 3 HOH A 168 1170 1170 HOH TIP . E 3 HOH A 169 1171 1171 HOH TIP . E 3 HOH A 170 1172 1172 HOH TIP . E 3 HOH A 171 1173 1173 HOH TIP . E 3 HOH A 172 1174 1174 HOH TIP . E 3 HOH A 173 1175 1175 HOH TIP . E 3 HOH A 174 1176 1176 HOH TIP . E 3 HOH A 175 1177 1177 HOH TIP . E 3 HOH A 176 1178 1178 HOH TIP . E 3 HOH A 177 1179 1179 HOH TIP . E 3 HOH A 178 1180 1180 HOH TIP . E 3 HOH A 179 1181 1181 HOH TIP . E 3 HOH A 180 1182 1182 HOH TIP . E 3 HOH A 181 1183 1183 HOH TIP . E 3 HOH A 182 1184 1184 HOH TIP . E 3 HOH A 183 1185 1185 HOH TIP . E 3 HOH A 184 1186 1186 HOH TIP . E 3 HOH A 185 1187 1187 HOH TIP . E 3 HOH A 186 1188 1188 HOH TIP . E 3 HOH A 187 1189 1189 HOH TIP . E 3 HOH A 188 1190 1190 HOH TIP . E 3 HOH A 189 1191 1191 HOH TIP . E 3 HOH A 190 1192 1192 HOH TIP . E 3 HOH A 191 1193 1193 HOH TIP . E 3 HOH A 192 1194 1194 HOH TIP . E 3 HOH A 193 1195 1195 HOH TIP . E 3 HOH A 194 1196 1196 HOH TIP . E 3 HOH A 195 1197 1197 HOH TIP . E 3 HOH A 196 1198 1198 HOH TIP . E 3 HOH A 197 1199 1199 HOH TIP . E 3 HOH A 198 1200 1200 HOH TIP . E 3 HOH A 199 1201 1201 HOH TIP . E 3 HOH A 200 1202 1202 HOH TIP . E 3 HOH A 201 1203 1203 HOH TIP . E 3 HOH A 202 1204 1204 HOH TIP . E 3 HOH A 203 1205 1205 HOH TIP . E 3 HOH A 204 1206 1206 HOH TIP . E 3 HOH A 205 1207 1207 HOH TIP . E 3 HOH A 206 1208 1208 HOH TIP . E 3 HOH A 207 1209 1209 HOH TIP . E 3 HOH A 208 1210 1210 HOH TIP . E 3 HOH A 209 1211 1211 HOH TIP . E 3 HOH A 210 1212 1212 HOH TIP . E 3 HOH A 211 1213 1213 HOH TIP . E 3 HOH A 212 1214 1214 HOH TIP . E 3 HOH A 213 1215 1215 HOH TIP . E 3 HOH A 214 1216 1216 HOH TIP . E 3 HOH A 215 1217 1217 HOH TIP . E 3 HOH A 216 1218 1218 HOH TIP . E 3 HOH A 217 1219 1219 HOH TIP . E 3 HOH A 218 1220 1220 HOH TIP . E 3 HOH A 219 1221 1221 HOH TIP . E 3 HOH A 220 1222 1222 HOH TIP . E 3 HOH A 221 1223 1223 HOH TIP . E 3 HOH A 222 1224 1224 HOH TIP . E 3 HOH A 223 1225 1225 HOH TIP . E 3 HOH A 224 1226 1226 HOH TIP . E 3 HOH A 225 1227 1227 HOH TIP . E 3 HOH A 226 1228 1228 HOH TIP . E 3 HOH A 227 1229 1229 HOH TIP . E 3 HOH A 228 1230 1230 HOH TIP . E 3 HOH A 229 1231 1231 HOH TIP . E 3 HOH A 230 1232 1232 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 35.71 _atom_site.Cartn_y -10.824 _atom_site.Cartn_z 62.854 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #