data_1LLW # _model_server_result.job_id b3ZnFvLyp6ehgGQH7qHZRA _model_server_result.datetime_utc '2024-11-05 19:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1llw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2073}' # _entry.id 1LLW # _exptl.entry_id 1LLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LLW _cell.length_a 166.521 _cell.length_b 166.521 _cell.length_c 219.874 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 1137 A CYS 1137 1_555 C FE1 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? metalc ? metalc2 A SG CYS 1143 A CYS 1143 1_555 C FE4 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A SG CYS 1148 A CYS 1148 1_555 C FE3 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 1LLW _atom_sites.fract_transf_matrix[1][1] 0.006005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 2070 70 FMN FMN . C 3 F3S A 1 2072 72 F3S F3S . D 4 AKG A 1 2073 73 AKG 2OG . E 5 HOH A 1 2074 1 HOH HOH . E 5 HOH A 2 2075 2 HOH HOH . E 5 HOH A 3 2076 3 HOH HOH . E 5 HOH A 4 2077 4 HOH HOH . E 5 HOH A 5 2078 5 HOH HOH . E 5 HOH A 6 2079 6 HOH HOH . E 5 HOH A 7 2080 7 HOH HOH . E 5 HOH A 8 2081 8 HOH HOH . E 5 HOH A 9 2082 9 HOH HOH . E 5 HOH A 10 2083 10 HOH HOH . E 5 HOH A 11 2084 11 HOH HOH . E 5 HOH A 12 2085 12 HOH HOH . E 5 HOH A 13 2086 13 HOH HOH . E 5 HOH A 14 2087 14 HOH HOH . E 5 HOH A 15 2088 15 HOH HOH . E 5 HOH A 16 2089 16 HOH HOH . E 5 HOH A 17 2090 17 HOH HOH . E 5 HOH A 18 2091 18 HOH HOH . E 5 HOH A 19 2092 19 HOH HOH . E 5 HOH A 20 2093 20 HOH HOH . E 5 HOH A 21 2094 21 HOH HOH . E 5 HOH A 22 2095 22 HOH HOH . E 5 HOH A 23 2096 23 HOH HOH . E 5 HOH A 24 2097 24 HOH HOH . E 5 HOH A 25 2098 25 HOH HOH . E 5 HOH A 26 2099 26 HOH HOH . E 5 HOH A 27 2100 27 HOH HOH . E 5 HOH A 28 2101 28 HOH HOH . E 5 HOH A 29 2102 29 HOH HOH . E 5 HOH A 30 2103 30 HOH HOH . E 5 HOH A 31 2104 31 HOH HOH . E 5 HOH A 32 2105 32 HOH HOH . E 5 HOH A 33 2106 33 HOH HOH . E 5 HOH A 34 2107 34 HOH HOH . E 5 HOH A 35 2108 35 HOH HOH . E 5 HOH A 36 2109 36 HOH HOH . E 5 HOH A 37 2110 37 HOH HOH . E 5 HOH A 38 2111 38 HOH HOH . E 5 HOH A 39 2112 39 HOH HOH . E 5 HOH A 40 2113 40 HOH HOH . E 5 HOH A 41 2114 41 HOH HOH . E 5 HOH A 42 2115 42 HOH HOH . E 5 HOH A 43 2116 43 HOH HOH . E 5 HOH A 44 2117 44 HOH HOH . E 5 HOH A 45 2118 45 HOH HOH . E 5 HOH A 46 2119 46 HOH HOH . E 5 HOH A 47 2120 47 HOH HOH . E 5 HOH A 48 2121 48 HOH HOH . E 5 HOH A 49 2122 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . D 4 177.17 225.933 32.344 1 85.55 ? C1 AKG 2073 A 1 HETATM 2 O O1 AKG . . . D 4 177.509 224.665 32.446 1 85.96 ? O1 AKG 2073 A 1 HETATM 3 O O2 AKG . . . D 4 177.205 226.718 33.377 1 85.55 ? O2 AKG 2073 A 1 HETATM 4 C C2 AKG . . . D 4 176.653 226.534 31.053 1 87.22 ? C2 AKG 2073 A 1 HETATM 5 O O5 AKG . . . D 4 175.939 225.739 30.275 1 89.21 ? O5 AKG 2073 A 1 HETATM 6 C C3 AKG . . . D 4 176.922 227.992 30.756 1 87.88 ? C3 AKG 2073 A 1 HETATM 7 C C4 AKG . . . D 4 175.675 228.654 30.164 1 85.43 ? C4 AKG 2073 A 1 HETATM 8 C C5 AKG . . . D 4 175.756 230.147 30.057 1 81.69 ? C5 AKG 2073 A 1 HETATM 9 O O3 AKG . . . D 4 175.359 230.794 28.995 1 82.45 ? O3 AKG 2073 A 1 HETATM 10 O O4 AKG . . . D 4 176.218 230.869 31.033 1 82.83 ? O4 AKG 2073 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #