data_1LLZ # _model_server_result.job_id HI-7BjRou001ErJcSeZGcQ _model_server_result.datetime_utc '2024-12-02 07:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1llz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2070}' # _entry.id 1LLZ # _exptl.entry_id 1LLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LLZ _cell.length_a 166.996 _cell.length_b 166.996 _cell.length_c 221.027 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 1137 A CYS 1137 1_555 C FE1 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc2 A SG CYS 1143 A CYS 1143 1_555 C FE4 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 A SG CYS 1148 A CYS 1148 1_555 C FE3 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 92 n n N1 C10 FMN doub 93 n n C2 O2 FMN doub 94 n n C2 N3 FMN sing 95 n n N3 C4 FMN sing 96 n n N3 HN3 FMN sing 97 n n C4 O4 FMN doub 98 n n C4 C4A FMN sing 99 n n C4A N5 FMN doub 100 n n C4A C10 FMN sing 101 n n N5 C5A FMN sing 102 n n C5A C6 FMN doub 103 n y C5A C9A FMN sing 104 n y C6 C7 FMN sing 105 n y C6 H6 FMN sing 106 n n C7 C7M FMN sing 107 n n C7 C8 FMN doub 108 n y C7M HM71 FMN sing 109 n n C7M HM72 FMN sing 110 n n C7M HM73 FMN sing 111 n n C8 C8M FMN sing 112 n n C8 C9 FMN sing 113 n y C8M HM81 FMN sing 114 n n C8M HM82 FMN sing 115 n n C8M HM83 FMN sing 116 n n C9 C9A FMN doub 117 n y C9 H9 FMN sing 118 n n C9A N10 FMN sing 119 n n N10 C10 FMN sing 120 n n N10 C1' FMN sing 121 n n C1' C2' FMN sing 122 n n C1' "H1'1" FMN sing 123 n n C1' "H1'2" FMN sing 124 n n C2' O2' FMN sing 125 n n C2' C3' FMN sing 126 n n C2' H2' FMN sing 127 n n O2' HO2' FMN sing 128 n n C3' O3' FMN sing 129 n n C3' C4' FMN sing 130 n n C3' H3' FMN sing 131 n n O3' HO3' FMN sing 132 n n C4' O4' FMN sing 133 n n C4' C5' FMN sing 134 n n C4' H4' FMN sing 135 n n O4' HO4' FMN sing 136 n n C5' O5' FMN sing 137 n n C5' "H5'1" FMN sing 138 n n C5' "H5'2" FMN sing 139 n n O5' P FMN sing 140 n n P O1P FMN doub 141 n n P O2P FMN sing 142 n n P O3P FMN sing 143 n n O2P HOP2 FMN sing 144 n n O3P HOP3 FMN sing 145 n n # _atom_sites.entry_id 1LLZ _atom_sites.fract_transf_matrix[1][1] 0.005988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 2070 70 FMN FMN . C 3 F3S A 1 2072 72 F3S F3S . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 183.288 226.3 30.139 1 88.08 ? N1 FMN 2070 A 1 HETATM 2 C C2 FMN . . . B 2 183.041 226.985 28.986 1 89.45 ? C2 FMN 2070 A 1 HETATM 3 O O2 FMN . . . B 2 183.66 226.699 27.966 1 90.56 ? O2 FMN 2070 A 1 HETATM 4 N N3 FMN . . . B 2 182.108 227.997 28.988 1 90.37 ? N3 FMN 2070 A 1 HETATM 5 C C4 FMN . . . B 2 181.416 228.352 30.136 1 90.63 ? C4 FMN 2070 A 1 HETATM 6 O O4 FMN . . . B 2 180.982 229.514 30.214 1 89.78 ? O4 FMN 2070 A 1 HETATM 7 C C4A FMN . . . B 2 181.673 227.632 31.307 1 89.23 ? C4A FMN 2070 A 1 HETATM 8 N N5 FMN . . . B 2 181.016 227.932 32.485 1 88.46 ? N5 FMN 2070 A 1 HETATM 9 C C5A FMN . . . B 2 181.307 227.211 33.614 1 88.36 ? C5A FMN 2070 A 1 HETATM 10 C C6 FMN . . . B 2 180.664 227.488 34.809 1 89.54 ? C6 FMN 2070 A 1 HETATM 11 C C7 FMN . . . B 2 180.957 226.76 35.955 1 88.64 ? C7 FMN 2070 A 1 HETATM 12 C C7M FMN . . . B 2 180.379 227.15 37.271 1 89.23 ? C7M FMN 2070 A 1 HETATM 13 C C8 FMN . . . B 2 181.898 225.763 35.918 1 88.77 ? C8 FMN 2070 A 1 HETATM 14 C C8M FMN . . . B 2 182.483 225.274 37.197 1 89.98 ? C8M FMN 2070 A 1 HETATM 15 C C9 FMN . . . B 2 182.542 225.484 34.728 1 88.71 ? C9 FMN 2070 A 1 HETATM 16 C C9A FMN . . . B 2 182.247 226.196 33.572 1 87.89 ? C9A FMN 2070 A 1 HETATM 17 N N10 FMN . . . B 2 182.908 225.914 32.401 1 86.21 ? N10 FMN 2070 A 1 HETATM 18 C C10 FMN . . . B 2 182.614 226.615 31.279 1 87.15 ? C10 FMN 2070 A 1 HETATM 19 C C1' FMN . . . B 2 183.987 224.88 32.357 1 85.87 ? C1' FMN 2070 A 1 HETATM 20 C C2' FMN . . . B 2 185.39 225.419 32.488 1 83.09 ? C2' FMN 2070 A 1 HETATM 21 O O2' FMN . . . B 2 185.679 226.005 31.27 1 83.69 ? O2' FMN 2070 A 1 HETATM 22 C C3' FMN . . . B 2 186.408 224.322 32.68 1 83.11 ? C3' FMN 2070 A 1 HETATM 23 O O3' FMN . . . B 2 186.541 223.607 31.488 1 83.66 ? O3' FMN 2070 A 1 HETATM 24 C C4' FMN . . . B 2 186.028 223.35 33.771 1 83.69 ? C4' FMN 2070 A 1 HETATM 25 O O4' FMN . . . B 2 185.665 224.044 34.916 1 86.2 ? O4' FMN 2070 A 1 HETATM 26 C C5' FMN . . . B 2 187.197 222.507 34.194 1 84.23 ? C5' FMN 2070 A 1 HETATM 27 O O5' FMN . . . B 2 186.738 221.478 35.012 1 80.64 ? O5' FMN 2070 A 1 HETATM 28 P P FMN . . . B 2 187.056 221.476 36.544 1 76.72 ? P FMN 2070 A 1 HETATM 29 O O1P FMN . . . B 2 187.065 220.084 36.945 1 77.1 ? O1P FMN 2070 A 1 HETATM 30 O O2P FMN . . . B 2 185.972 222.298 37.186 1 79.37 ? O2P FMN 2070 A 1 HETATM 31 O O3P FMN . . . B 2 188.39 222.086 36.907 1 80.97 ? O3P FMN 2070 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #