data_1LM1
#
_model_server_result.job_id            uG0zq5RlwXiaoqEOW-WtLw 
_model_server_result.datetime_utc      '2024-11-30 04:38:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lm1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2070}' 
#
_entry.id    1LM1 
#
_exptl.entry_id    1LM1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LM1 
_cell.length_a            166.083 
_cell.length_b            166.083 
_cell.length_c            219.584 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LM1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 1137 A CYS 1137 1_555 E FE1 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc2 A SG CYS 1143 A CYS 1143 1_555 E FE4 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc3 A SG CYS 1148 A CYS 1148 1_555 E FE3 F3S . A F3S 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 98 n n 
N1 C10 FMN doub 99 n n 
C2 O2 FMN doub 100 n n 
C2 N3 FMN sing 101 n n 
N3 C4 FMN sing 102 n n 
N3 HN3 FMN sing 103 n n 
C4 O4 FMN doub 104 n n 
C4 C4A FMN sing 105 n n 
C4A N5 FMN doub 106 n n 
C4A C10 FMN sing 107 n n 
N5 C5A FMN sing 108 n n 
C5A C6 FMN doub 109 n y 
C5A C9A FMN sing 110 n y 
C6 C7 FMN sing 111 n y 
C6 H6 FMN sing 112 n n 
C7 C7M FMN sing 113 n n 
C7 C8 FMN doub 114 n y 
C7M HM71 FMN sing 115 n n 
C7M HM72 FMN sing 116 n n 
C7M HM73 FMN sing 117 n n 
C8 C8M FMN sing 118 n n 
C8 C9 FMN sing 119 n y 
C8M HM81 FMN sing 120 n n 
C8M HM82 FMN sing 121 n n 
C8M HM83 FMN sing 122 n n 
C9 C9A FMN doub 123 n y 
C9 H9 FMN sing 124 n n 
C9A N10 FMN sing 125 n n 
N10 C10 FMN sing 126 n n 
N10 C1' FMN sing 127 n n 
C1' C2' FMN sing 128 n n 
C1' "H1'1" FMN sing 129 n n 
C1' "H1'2" FMN sing 130 n n 
C2' O2' FMN sing 131 n n 
C2' C3' FMN sing 132 n n 
C2' H2' FMN sing 133 n n 
O2' HO2' FMN sing 134 n n 
C3' O3' FMN sing 135 n n 
C3' C4' FMN sing 136 n n 
C3' H3' FMN sing 137 n n 
O3' HO3' FMN sing 138 n n 
C4' O4' FMN sing 139 n n 
C4' C5' FMN sing 140 n n 
C4' H4' FMN sing 141 n n 
O4' HO4' FMN sing 142 n n 
C5' O5' FMN sing 143 n n 
C5' "H5'1" FMN sing 144 n n 
C5' "H5'2" FMN sing 145 n n 
O5' P FMN sing 146 n n 
P O1P FMN doub 147 n n 
P O2P FMN sing 148 n n 
P O3P FMN sing 149 n n 
O2P HOP2 FMN sing 150 n n 
O3P HOP3 FMN sing 151 n n 
#
_atom_sites.entry_id                     1LM1 
_atom_sites.fract_transf_matrix[1][1]    0.006021 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006021 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 2074 74 ACT ACT . 
C 2 ACT A 1 2075 75 ACT ACT . 
D 3 FMN A 1 2070 70 FMN FMN . 
E 4 F3S A 1 2072 72 F3S F3S . 
F 5 HOH A 1 2076 1 HOH HOH . 
F 5 HOH A 2 2077 2 HOH HOH . 
F 5 HOH A 3 2078 3 HOH HOH . 
F 5 HOH A 4 2079 4 HOH HOH . 
F 5 HOH A 5 2080 5 HOH HOH . 
F 5 HOH A 6 2081 6 HOH HOH . 
F 5 HOH A 7 2082 7 HOH HOH . 
F 5 HOH A 8 2083 8 HOH HOH . 
F 5 HOH A 9 2084 9 HOH HOH . 
F 5 HOH A 10 2085 10 HOH HOH . 
F 5 HOH A 11 2086 11 HOH HOH . 
F 5 HOH A 12 2087 12 HOH HOH . 
F 5 HOH A 13 2088 13 HOH HOH . 
F 5 HOH A 14 2089 14 HOH HOH . 
F 5 HOH A 15 2090 15 HOH HOH . 
F 5 HOH A 16 2091 16 HOH HOH . 
F 5 HOH A 17 2092 17 HOH HOH . 
F 5 HOH A 18 2093 18 HOH HOH . 
F 5 HOH A 19 2094 19 HOH HOH . 
F 5 HOH A 20 2095 20 HOH HOH . 
F 5 HOH A 21 2096 21 HOH HOH . 
F 5 HOH A 22 2097 22 HOH HOH . 
F 5 HOH A 23 2098 23 HOH HOH . 
F 5 HOH A 24 2099 24 HOH HOH . 
F 5 HOH A 25 2100 25 HOH HOH . 
F 5 HOH A 26 2101 26 HOH HOH . 
F 5 HOH A 27 2102 27 HOH HOH . 
F 5 HOH A 28 2103 28 HOH HOH . 
F 5 HOH A 29 2104 29 HOH HOH . 
F 5 HOH A 30 2105 30 HOH HOH . 
F 5 HOH A 31 2106 31 HOH HOH . 
F 5 HOH A 32 2107 32 HOH HOH . 
F 5 HOH A 33 2108 33 HOH HOH . 
F 5 HOH A 34 2109 34 HOH HOH . 
F 5 HOH A 35 2110 35 HOH HOH . 
F 5 HOH A 36 2111 36 HOH HOH . 
F 5 HOH A 37 2112 37 HOH HOH . 
F 5 HOH A 38 2113 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 3 182.128 224.68 30.142 1 57.79 ? N1 FMN 2070 A 1 
HETATM 2 C C2 FMN . . . D 3 182.012 225.359 28.986 1 59.27 ? C2 FMN 2070 A 1 
HETATM 3 O O2 FMN . . . D 3 182.53 224.891 27.986 1 59.72 ? O2 FMN 2070 A 1 
HETATM 4 N N3 FMN . . . D 3 181.321 226.551 28.973 1 62.68 ? N3 FMN 2070 A 1 
HETATM 5 C C4 FMN . . . D 3 180.728 227.024 30.136 1 60.75 ? C4 FMN 2070 A 1 
HETATM 6 O O4 FMN . . . D 3 180.327 228.189 30.202 1 58.78 ? O4 FMN 2070 A 1 
HETATM 7 C C4A FMN . . . D 3 180.866 226.288 31.293 1 56.81 ? C4A FMN 2070 A 1 
HETATM 8 N N5 FMN . . . D 3 180.316 226.731 32.456 1 57.59 ? N5 FMN 2070 A 1 
HETATM 9 C C5A FMN . . . D 3 180.478 226.006 33.61 1 56.2 ? C5A FMN 2070 A 1 
HETATM 10 C C6 FMN . . . D 3 179.937 226.47 34.793 1 56.47 ? C6 FMN 2070 A 1 
HETATM 11 C C7 FMN . . . D 3 180.082 225.734 35.954 1 58.07 ? C7 FMN 2070 A 1 
HETATM 12 C C7M FMN . . . D 3 179.613 226.219 37.285 1 59.29 ? C7M FMN 2070 A 1 
HETATM 13 C C8 FMN . . . D 3 180.787 224.573 35.947 1 59.19 ? C8 FMN 2070 A 1 
HETATM 14 C C8M FMN . . . D 3 181.356 224.225 37.276 1 59.66 ? C8M FMN 2070 A 1 
HETATM 15 C C9 FMN . . . D 3 181.353 224.102 34.763 1 58.79 ? C9 FMN 2070 A 1 
HETATM 16 C C9A FMN . . . D 3 181.19 224.822 33.587 1 57.21 ? C9A FMN 2070 A 1 
HETATM 17 N N10 FMN . . . D 3 181.752 224.401 32.403 1 56.5 ? N10 FMN 2070 A 1 
HETATM 18 C C10 FMN . . . D 3 181.567 225.129 31.277 1 55.28 ? C10 FMN 2070 A 1 
HETATM 19 C C1' FMN . . . D 3 182.803 223.346 32.397 1 55.48 ? C1' FMN 2070 A 1 
HETATM 20 C C2' FMN . . . D 3 184.243 223.835 32.443 1 54.12 ? C2' FMN 2070 A 1 
HETATM 21 O O2' FMN . . . D 3 184.551 224.659 31.355 1 53.42 ? O2' FMN 2070 A 1 
HETATM 22 C C3' FMN . . . D 3 185.193 222.653 32.518 1 54.72 ? C3' FMN 2070 A 1 
HETATM 23 O O3' FMN . . . D 3 185.109 221.916 31.333 1 54.53 ? O3' FMN 2070 A 1 
HETATM 24 C C4' FMN . . . D 3 184.791 221.695 33.646 1 59.38 ? C4' FMN 2070 A 1 
HETATM 25 O O4' FMN . . . D 3 184.316 222.332 34.812 1 61.69 ? O4' FMN 2070 A 1 
HETATM 26 C C5' FMN . . . D 3 185.867 220.714 34.052 1 58.64 ? C5' FMN 2070 A 1 
HETATM 27 O O5' FMN . . . D 3 185.274 219.89 34.986 1 56.51 ? O5' FMN 2070 A 1 
HETATM 28 P P FMN . . . D 3 185.655 219.918 36.511 1 55.33 ? P FMN 2070 A 1 
HETATM 29 O O1P FMN . . . D 3 185.535 218.535 36.962 1 56.08 ? O1P FMN 2070 A 1 
HETATM 30 O O2P FMN . . . D 3 184.73 220.844 37.262 1 55.15 ? O2P FMN 2070 A 1 
HETATM 31 O O3P FMN . . . D 3 187.074 220.392 36.746 1 59.89 ? O3P FMN 2070 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           210 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#