data_1LM3 # _model_server_result.job_id wBdWu_iNB_31gLn27jtImQ _model_server_result.datetime_utc '2024-11-12 20:57:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":107}' # _entry.id 1LM3 # _exptl.entry_id 1LM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LM3 _cell.length_a 42.098 _cell.length_b 48.995 _cell.length_c 114.419 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 7 B MET 7 1_555 D FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 A OG1 THR 9 B THR 9 1_555 C MG MG . B MG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc3 A NE2 HIS 102 B HIS 102 1_555 D FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 B SD MET 7 D MET 7 1_555 G FE HEM . D HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 B OD1 ASP 74 D ASP 74 1_555 E MG MG . D MG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc6 B NE2 HIS 102 D HIS 102 1_555 G FE HEM . D HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LM3 _atom_sites.fract_transf_matrix[1][1] 0.023754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG B 1 107 25 MG MG . D 3 HEM B 1 200 200 HEM HEC . E 2 MG D 1 107 61 MG MG . F 2 MG D 1 108 70 MG MG . G 3 HEM D 1 200 200 HEM HEC . H 4 HOH B 1 201 1 HOH HOH . H 4 HOH B 2 202 2 HOH HOH . H 4 HOH B 3 203 3 HOH HOH . H 4 HOH B 4 204 4 HOH HOH . H 4 HOH B 5 205 13 HOH HOH . H 4 HOH B 6 206 14 HOH HOH . H 4 HOH B 7 207 15 HOH HOH . H 4 HOH B 8 208 16 HOH HOH . H 4 HOH B 9 209 17 HOH HOH . H 4 HOH B 10 210 18 HOH HOH . H 4 HOH B 11 211 19 HOH HOH . H 4 HOH B 12 212 20 HOH HOH . H 4 HOH B 13 213 21 HOH HOH . H 4 HOH B 14 214 22 HOH HOH . H 4 HOH B 15 215 23 HOH HOH . H 4 HOH B 16 216 26 HOH HOH . H 4 HOH B 17 217 27 HOH HOH . H 4 HOH B 18 218 28 HOH HOH . H 4 HOH B 19 219 29 HOH HOH . H 4 HOH B 20 220 30 HOH HOH . H 4 HOH B 21 221 36 HOH HOH . H 4 HOH B 22 222 37 HOH HOH . H 4 HOH B 23 223 38 HOH HOH . H 4 HOH B 24 224 39 HOH HOH . H 4 HOH B 25 225 40 HOH HOH . H 4 HOH B 26 226 41 HOH HOH . H 4 HOH B 27 227 43 HOH HOH . H 4 HOH B 28 228 45 HOH HOH . H 4 HOH B 29 229 46 HOH HOH . H 4 HOH B 30 230 47 HOH HOH . H 4 HOH B 31 231 64 HOH HOH . H 4 HOH B 32 232 65 HOH HOH . H 4 HOH B 33 233 67 HOH HOH . H 4 HOH B 34 234 68 HOH HOH . H 4 HOH B 35 235 69 HOH HOH . H 4 HOH B 36 236 71 HOH HOH . H 4 HOH B 37 237 74 HOH HOH . I 4 HOH D 1 201 5 HOH HOH . I 4 HOH D 2 202 6 HOH HOH . I 4 HOH D 3 203 7 HOH HOH . I 4 HOH D 4 204 8 HOH HOH . I 4 HOH D 5 205 9 HOH HOH . I 4 HOH D 6 206 10 HOH HOH . I 4 HOH D 7 207 11 HOH HOH . I 4 HOH D 8 208 12 HOH HOH . I 4 HOH D 9 209 24 HOH HOH . I 4 HOH D 10 210 31 HOH HOH . I 4 HOH D 11 211 32 HOH HOH . I 4 HOH D 12 212 33 HOH HOH . I 4 HOH D 13 213 42 HOH HOH . I 4 HOH D 14 214 48 HOH HOH . I 4 HOH D 15 215 50 HOH HOH . I 4 HOH D 16 216 51 HOH HOH . I 4 HOH D 17 217 52 HOH HOH . I 4 HOH D 18 218 54 HOH HOH . I 4 HOH D 19 219 55 HOH HOH . I 4 HOH D 20 220 56 HOH HOH . I 4 HOH D 21 221 57 HOH HOH . I 4 HOH D 22 222 59 HOH HOH . I 4 HOH D 23 223 60 HOH HOH . I 4 HOH D 24 224 62 HOH HOH . I 4 HOH D 25 225 63 HOH HOH . I 4 HOH D 26 226 72 HOH HOH . I 4 HOH D 27 227 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 1.676 _atom_site.Cartn_y 11.211 _atom_site.Cartn_z 4.064 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 107 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #