data_1LMC # _model_server_result.job_id ady2CKgAVFN9KU6YTGbU8A _model_server_result.datetime_utc '2024-10-20 08:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":130}' # _entry.id 1LMC # _exptl.entry_id 1LMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 551.543 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BULGECIN A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LMC _cell.length_a 76.57 _cell.length_b 76.57 _cell.length_c 54.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C16 H29 N3 O14 S2' _chem_comp.formula_weight 551.543 _chem_comp.id BUL _chem_comp.mon_nstd_flag . _chem_comp.name 'BULGECIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LMC _atom_sites.fract_transf_matrix[1][1] 0.01306 _atom_sites.fract_transf_matrix[1][2] 0.00754 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BUL A 1 130 130 BUL BUL . C 3 HOH A 1 134 134 HOH HOH . C 3 HOH A 2 135 135 HOH HOH . C 3 HOH A 3 136 136 HOH HOH . C 3 HOH A 4 137 137 HOH HOH . C 3 HOH A 5 138 138 HOH HOH . C 3 HOH A 6 139 139 HOH HOH . C 3 HOH A 7 140 140 HOH HOH . C 3 HOH A 8 141 141 HOH HOH . C 3 HOH A 9 142 142 HOH HOH . C 3 HOH A 10 143 143 HOH HOH . C 3 HOH A 11 144 144 HOH HOH . C 3 HOH A 12 145 145 HOH HOH . C 3 HOH A 13 146 146 HOH HOH . C 3 HOH A 14 147 147 HOH HOH . C 3 HOH A 15 148 148 HOH HOH . C 3 HOH A 16 149 149 HOH HOH . C 3 HOH A 17 150 150 HOH HOH . C 3 HOH A 18 151 151 HOH HOH . C 3 HOH A 19 152 152 HOH HOH . C 3 HOH A 20 153 153 HOH HOH . C 3 HOH A 21 154 154 HOH HOH . C 3 HOH A 22 155 155 HOH HOH . C 3 HOH A 23 156 156 HOH HOH . C 3 HOH A 24 157 157 HOH HOH . C 3 HOH A 25 158 158 HOH HOH . C 3 HOH A 26 159 159 HOH HOH . C 3 HOH A 27 160 160 HOH HOH . C 3 HOH A 28 161 161 HOH HOH . C 3 HOH A 29 162 162 HOH HOH . C 3 HOH A 30 163 163 HOH HOH . C 3 HOH A 31 164 164 HOH HOH . C 3 HOH A 32 165 165 HOH HOH . C 3 HOH A 33 166 166 HOH HOH . C 3 HOH A 34 167 167 HOH HOH . C 3 HOH A 35 168 168 HOH HOH . C 3 HOH A 36 169 169 HOH HOH . C 3 HOH A 37 170 170 HOH HOH . C 3 HOH A 38 171 171 HOH HOH . C 3 HOH A 39 172 172 HOH HOH . C 3 HOH A 40 173 173 HOH HOH . C 3 HOH A 41 174 174 HOH HOH . C 3 HOH A 42 175 175 HOH HOH . C 3 HOH A 43 176 176 HOH HOH . C 3 HOH A 44 177 177 HOH HOH . C 3 HOH A 45 178 178 HOH HOH . C 3 HOH A 46 179 179 HOH HOH . C 3 HOH A 47 180 180 HOH HOH . C 3 HOH A 48 181 181 HOH HOH . C 3 HOH A 49 182 182 HOH HOH . C 3 HOH A 50 183 183 HOH HOH . C 3 HOH A 51 184 184 HOH HOH . C 3 HOH A 52 185 185 HOH HOH . C 3 HOH A 53 186 186 HOH HOH . C 3 HOH A 54 187 187 HOH HOH . C 3 HOH A 55 188 188 HOH HOH . C 3 HOH A 56 189 189 HOH HOH . C 3 HOH A 57 190 190 HOH HOH . C 3 HOH A 58 191 191 HOH HOH . C 3 HOH A 59 192 192 HOH HOH . C 3 HOH A 60 193 193 HOH HOH . C 3 HOH A 61 194 194 HOH HOH . C 3 HOH A 62 195 195 HOH HOH . C 3 HOH A 63 196 196 HOH HOH . C 3 HOH A 64 197 197 HOH HOH . C 3 HOH A 65 198 198 HOH HOH . C 3 HOH A 66 199 199 HOH HOH . C 3 HOH A 67 200 200 HOH HOH . C 3 HOH A 68 201 201 HOH HOH . C 3 HOH A 69 202 202 HOH HOH . C 3 HOH A 70 203 203 HOH HOH . C 3 HOH A 71 204 204 HOH HOH . C 3 HOH A 72 205 205 HOH HOH . C 3 HOH A 73 206 206 HOH HOH . C 3 HOH A 74 207 207 HOH HOH . C 3 HOH A 75 208 208 HOH HOH . C 3 HOH A 76 209 209 HOH HOH . C 3 HOH A 77 210 210 HOH HOH . C 3 HOH A 78 211 211 HOH HOH . C 3 HOH A 79 212 212 HOH HOH . C 3 HOH A 80 213 213 HOH HOH . C 3 HOH A 81 214 214 HOH HOH . C 3 HOH A 82 215 215 HOH HOH . C 3 HOH A 83 216 216 HOH HOH . C 3 HOH A 84 217 217 HOH HOH . C 3 HOH A 85 218 218 HOH HOH . C 3 HOH A 86 219 219 HOH HOH . C 3 HOH A 87 220 220 HOH HOH . C 3 HOH A 88 221 221 HOH HOH . C 3 HOH A 89 222 222 HOH HOH . C 3 HOH A 90 223 223 HOH HOH . C 3 HOH A 91 224 224 HOH HOH . C 3 HOH A 92 225 225 HOH HOH . C 3 HOH A 93 226 226 HOH HOH . C 3 HOH A 94 227 227 HOH HOH . C 3 HOH A 95 228 228 HOH HOH . C 3 HOH A 96 229 229 HOH HOH . C 3 HOH A 97 230 230 HOH HOH . C 3 HOH A 98 231 231 HOH HOH . C 3 HOH A 99 232 232 HOH HOH . C 3 HOH A 100 233 233 HOH HOH . C 3 HOH A 101 234 234 HOH HOH . C 3 HOH A 102 235 235 HOH HOH . C 3 HOH A 103 236 236 HOH HOH . C 3 HOH A 104 237 237 HOH HOH . C 3 HOH A 105 238 238 HOH HOH . C 3 HOH A 106 239 239 HOH HOH . C 3 HOH A 107 240 240 HOH HOH . C 3 HOH A 108 241 241 HOH HOH . C 3 HOH A 109 242 242 HOH HOH . C 3 HOH A 110 243 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 BUL . . . B 2 16.1 59.142 28.34 0 29.59 ? O1 BUL 130 A 1 HETATM 2 C C2 BUL . . . B 2 15.629 58.491 27.158 0 31.19 ? C2 BUL 130 A 1 HETATM 3 C C3 BUL . . . B 2 14.483 57.573 27.538 0 25.17 ? C3 BUL 130 A 1 HETATM 4 C C4 BUL . . . B 2 13.324 58.388 28.104 0 25.92 ? C4 BUL 130 A 1 HETATM 5 C C5 BUL . . . B 2 13.804 59.376 29.217 0 22.27 ? C5 BUL 130 A 1 HETATM 6 C C6 BUL . . . B 2 15.172 59.85 29.064 0 27.02 ? C6 BUL 130 A 1 HETATM 7 N N7 BUL . . . B 2 19.432 57.756 24.498 0 27.59 ? N7 BUL 130 A 1 HETATM 8 C C8 BUL . . . B 2 19.596 59.115 25.215 0 28.66 ? C8 BUL 130 A 1 HETATM 9 C C9 BUL . . . B 2 18.861 58.979 26.554 0 23.63 ? C9 BUL 130 A 1 HETATM 10 C C10 BUL . . . B 2 17.631 58.198 25.979 0 26.02 ? C10 BUL 130 A 1 HETATM 11 C C11 BUL . . . B 2 18.151 57.06 25.037 0 24.09 ? C11 BUL 130 A 1 HETATM 12 C C12 BUL . . . B 2 15.719 60.927 29.948 0 37.25 ? C12 BUL 130 A 1 HETATM 13 O O13 BUL . . . B 2 16.537 61.833 29.141 0 34.49 ? O13 BUL 130 A 1 HETATM 14 O O14 BUL . . . B 2 12.721 60.305 29.104 0 31.95 ? O14 BUL 130 A 1 HETATM 15 O O15 BUL . . . B 2 12.857 57.268 28.869 0 26.13 ? O15 BUL 130 A 1 HETATM 16 N N16 BUL . . . B 2 14.16 56.699 26.432 0 24.93 ? N16 BUL 130 A 1 HETATM 17 C C17 BUL . . . B 2 14.424 55.381 26.372 0 23.05 ? C17 BUL 130 A 1 HETATM 18 O O18 BUL . . . B 2 15.008 54.753 27.241 0 22.97 ? O18 BUL 130 A 1 HETATM 19 C C19 BUL . . . B 2 14.176 54.777 25.013 0 24.35 ? C19 BUL 130 A 1 HETATM 20 O O20 BUL . . . B 2 16.706 57.62 26.842 0 27.42 ? O20 BUL 130 A 1 HETATM 21 C C21 BUL . . . B 2 17.263 56.75 23.808 0 26.13 ? C21 BUL 130 A 1 HETATM 22 O O22 BUL . . . B 2 17.033 57.879 22.988 0 28.19 ? O22 BUL 130 A 1 HETATM 23 C C23 BUL . . . B 2 21.083 59.343 25.54 0 37.05 ? C23 BUL 130 A 1 HETATM 24 O O24 BUL . . . B 2 21.701 59.069 24.505 0 36.75 ? O24 BUL 130 A 1 HETATM 25 N N25 BUL . . . B 2 21.204 60.456 26.323 0 37.25 ? N25 BUL 130 A 1 HETATM 26 C C26 BUL . . . B 2 22.358 61.409 26.134 0 37.25 ? C26 BUL 130 A 1 HETATM 27 C C27 BUL . . . B 2 22.708 62.036 27.466 0 32.5 ? C27 BUL 130 A 1 HETATM 28 S S28 BUL . . . B 2 24.514 62.2 27.756 0 37.25 ? S28 BUL 130 A 1 HETATM 29 O O29 BUL . . . B 2 24.77 63.43 27.033 0 36.81 ? O29 BUL 130 A 1 HETATM 30 O O30 BUL . . . B 2 24.645 61.86 29.149 0 37.25 ? O30 BUL 130 A 1 HETATM 31 O O31 BUL . . . B 2 25.053 61.068 27.073 0 37.25 ? O31 BUL 130 A 1 HETATM 32 S S32 BUL . . . B 2 11.831 60.477 30.315 0 34.75 ? S32 BUL 130 A 1 HETATM 33 O O33 BUL . . . B 2 11.672 61.885 30.543 0 35.28 ? O33 BUL 130 A 1 HETATM 34 O O34 BUL . . . B 2 10.9 59.374 30.339 0 26.5 ? O34 BUL 130 A 1 HETATM 35 O O35 BUL . . . B 2 12.476 59.851 31.427 0 36.22 ? O35 BUL 130 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #