data_1LMW # _model_server_result.job_id MyhvLu72l_KKBmXocv2NJA _model_server_result.datetime_utc '2024-11-07 12:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1LMW # _exptl.entry_id 1LMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'HUMAN LOW MOLECULAR WEIGHT U-PA' _entity.formula_weight 395.862 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LMW _cell.length_a 176.7 _cell.length_b 176.7 _cell.length_c 54.4 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 1 1_555 B SG CYS 121 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 B SG CYS 31 B CYS 42 1_555 B SG CYS 47 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 39 B CYS 50 1_555 B SG CYS 110 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 135 B CYS 136 1_555 B SG CYS 204 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 167 B CYS 168 1_555 B SG CYS 183 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 194 B CYS 191 1_555 B SG CYS 222 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 C SG CYS 13 C CYS 1 1_555 D SG CYS 121 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 D SG CYS 31 D CYS 42 1_555 D SG CYS 47 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 D SG CYS 39 D CYS 50 1_555 D SG CYS 110 D CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 D SG CYS 135 D CYS 136 1_555 D SG CYS 204 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf11 D SG CYS 167 D CYS 168 1_555 D SG CYS 183 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 D SG CYS 194 D CYS 191 1_555 D SG CYS 222 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 E C3 0GJ . B 0GJ 1 1_555 B NE2 HIS 46 B HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale2 E C2 0GJ . B 0GJ 1 1_555 B OG SER 198 B SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale3 F C3 0GJ . D 0GJ 1 1_555 D NE2 HIS 46 D HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.566 ? covale ? covale4 F C2 0GJ . D 0GJ 1 1_555 D OG SER 198 D SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C14 H28 Cl N6 O5 1' _chem_comp.formula_weight 395.862 _chem_comp.id 0GJ _chem_comp.mon_nstd_flag . _chem_comp.name L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0GJ sing 1 n n N H 0GJ sing 2 n n N H2 0GJ sing 3 n n CA C 0GJ sing 4 n n CA CB 0GJ sing 5 n n CA HA 0GJ sing 6 n n C O 0GJ doub 7 n n C N1 0GJ sing 8 n n CB CG 0GJ sing 9 n n CB HB2 0GJ sing 10 n n CB HB3 0GJ sing 11 n n CG CD 0GJ sing 12 n n CG HG2 0GJ sing 13 n n CG HG3 0GJ sing 14 n n CD OE1 0GJ doub 15 n n CD OE2 0GJ sing 16 n n OE2 HE2 0GJ sing 17 n n N1 CA1 0GJ sing 18 n n N1 H1 0GJ sing 19 n n CA1 C1 0GJ sing 20 n n CA1 HA2 0GJ sing 21 n n CA1 HA3 0GJ sing 22 n n C1 O1 0GJ doub 23 n n C1 N2 0GJ sing 24 n n N2 CA2 0GJ sing 25 n n N2 H3 0GJ sing 26 n n CA2 C2 0GJ sing 27 n n CA2 CB1 0GJ sing 28 n n CA2 HA1 0GJ sing 29 n n C2 O2 0GJ sing 30 n n C2 C3 0GJ sing 31 n n CB1 CG1 0GJ sing 32 n n CB1 HB21 0GJ sing 33 n n CB1 HB31 0GJ sing 34 n n CG1 CD1 0GJ sing 35 n n CG1 HG21 0GJ sing 36 n n CG1 HG31 0GJ sing 37 n n CD1 NE 0GJ sing 38 n n CD1 HD2 0GJ sing 39 n n CD1 HD3 0GJ sing 40 n n NE CZ 0GJ sing 41 n n NE HE 0GJ sing 42 n n CZ NH1 0GJ sing 43 n n CZ NH2 0GJ doub 44 n n NH1 HH11 0GJ sing 45 n n NH1 HH12 0GJ sing 46 n n NH2 HH21 0GJ sing 47 n n NH2 HH22 0GJ sing 48 n n C3 H11 0GJ sing 49 n n C3 H21 0GJ sing 50 n n CL C3 0GJ sing 51 n n C2 H27 0GJ sing 52 n n O2 H28 0GJ sing 53 n n # _atom_sites.entry_id 1LMW _atom_sites.fract_transf_matrix[1][1] 0.005659 _atom_sites.fract_transf_matrix[1][2] 0.003267 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 0GJ B 1 1 1 0GJ GLU . F 3 0GJ D 1 1 1 0GJ GLU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0GJ . . . E 3 117.355 146.215 3.111 1 46.94 ? N 0GJ 1 B 1 HETATM 2 C CA 0GJ . . . E 3 116.344 145.648 2.168 1 40.06 ? CA 0GJ 1 B 1 HETATM 3 C C 0GJ . . . E 3 115.904 146.697 1.172 1 35.89 ? C 0GJ 1 B 1 HETATM 4 O O 0GJ . . . E 3 115.201 147.644 1.54 1 34.66 ? O 0GJ 1 B 1 HETATM 5 C CB 0GJ . . . E 3 115.105 145.188 2.925 1 36.43 ? CB 0GJ 1 B 1 HETATM 6 C CG 0GJ . . . E 3 115.338 144.901 4.382 1 33.21 ? CG 0GJ 1 B 1 HETATM 7 C CD 0GJ . . . E 3 114.046 144.732 5.125 1 34.96 ? CD 0GJ 1 B 1 HETATM 8 O OE1 0GJ . . . E 3 112.979 144.664 4.453 1 33.89 ? OE1 0GJ 1 B 1 HETATM 9 O OE2 0GJ . . . E 3 114.096 144.677 6.38 1 28.67 ? OE2 0GJ 1 B 1 HETATM 10 N N1 0GJ . . . E 3 116.271 146.494 -0.089 1 32.74 ? N1 0GJ 1 B 1 HETATM 11 C CA1 0GJ . . . E 3 115.888 147.431 -1.132 1 34.58 ? CA1 0GJ 1 B 1 HETATM 12 C C1 0GJ . . . E 3 114.389 147.686 -1.278 1 34.15 ? C1 0GJ 1 B 1 HETATM 13 O O1 0GJ . . . E 3 113.542 146.822 -0.995 1 34.79 ? O1 0GJ 1 B 1 HETATM 14 N N2 0GJ . . . E 3 114.06 148.88 -1.759 1 27.04 ? N2 0GJ 1 B 1 HETATM 15 C CA2 0GJ . . . E 3 112.673 149.269 -1.948 1 28.67 ? CA2 0GJ 1 B 1 HETATM 16 C C2 0GJ . . . E 3 112.393 149.411 -3.425 1 36.1 ? C2 0GJ 1 B 1 HETATM 17 O O2 0GJ . . . E 3 111.04 149.127 -3.836 1 39.62 ? O2 0GJ 1 B 1 HETATM 18 C CB1 0GJ . . . E 3 112.36 150.485 -1.08 1 9.43 ? CB1 0GJ 1 B 1 HETATM 19 C CG1 0GJ . . . E 3 112.369 150.159 0.4 1 5.42 ? CG1 0GJ 1 B 1 HETATM 20 C CD1 0GJ . . . E 3 112.174 151.391 1.214 1 2 ? CD1 0GJ 1 B 1 HETATM 21 N NE 0GJ . . . E 3 112.054 151.074 2.629 1 5.3 ? NE 0GJ 1 B 1 HETATM 22 C CZ 0GJ . . . E 3 112.006 152.002 3.57 1 12.45 ? CZ 0GJ 1 B 1 HETATM 23 N NH1 0GJ . . . E 3 112.094 153.276 3.198 1 13.6 ? NH1 0GJ 1 B 1 HETATM 24 N NH2 0GJ . . . E 3 111.846 151.672 4.863 1 6.39 ? NH2 0GJ 1 B 1 HETATM 25 C C3 0GJ . . . E 3 113.226 148.462 -4.404 1 43.01 ? C3 0GJ 1 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #