data_1LMW
#
_model_server_result.job_id            1AVbfREIWNj2s7ooMZHM8Q 
_model_server_result.datetime_utc      '2024-12-02 13:05:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lmw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1}' 
#
_entry.id    1LMW 
#
_exptl.entry_id    1LMW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'HUMAN LOW MOLECULAR WEIGHT U-PA' 
_entity.formula_weight              395.862 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1LMW 
_cell.length_a            176.7 
_cell.length_b            176.7 
_cell.length_c            54.4 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LMW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E 1 1 
C,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 A CYS 1 1_555 B SG CYS 121 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 31 B CYS 42 1_555 B SG CYS 47 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 39 B CYS 50 1_555 B SG CYS 110 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 135 B CYS 136 1_555 B SG CYS 204 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 167 B CYS 168 1_555 B SG CYS 183 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 194 B CYS 191 1_555 B SG CYS 222 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 C SG CYS 13 C CYS 1 1_555 D SG CYS 121 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 D SG CYS 31 D CYS 42 1_555 D SG CYS 47 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 D SG CYS 39 D CYS 50 1_555 D SG CYS 110 D CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 D SG CYS 135 D CYS 136 1_555 D SG CYS 204 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf11 D SG CYS 167 D CYS 168 1_555 D SG CYS 183 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf12 D SG CYS 194 D CYS 191 1_555 D SG CYS 222 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 E C3 0GJ . B 0GJ 1 1_555 B NE2 HIS 46 B HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? 
covale ? covale2 E C2 0GJ . B 0GJ 1 1_555 B OG SER 198 B SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale3 F C3 0GJ . D 0GJ 1 1_555 D NE2 HIS 46 D HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.566 ? 
covale ? covale4 F C2 0GJ . D 0GJ 1 1_555 D OG SER 198 D SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C14 H28 Cl N6 O5 1' 
_chem_comp.formula_weight    395.862 
_chem_comp.id                0GJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA 0GJ sing 1 n n 
N H 0GJ sing 2 n n 
N H2 0GJ sing 3 n n 
CA C 0GJ sing 4 n n 
CA CB 0GJ sing 5 n n 
CA HA 0GJ sing 6 n n 
C O 0GJ doub 7 n n 
C N1 0GJ sing 8 n n 
CB CG 0GJ sing 9 n n 
CB HB2 0GJ sing 10 n n 
CB HB3 0GJ sing 11 n n 
CG CD 0GJ sing 12 n n 
CG HG2 0GJ sing 13 n n 
CG HG3 0GJ sing 14 n n 
CD OE1 0GJ doub 15 n n 
CD OE2 0GJ sing 16 n n 
OE2 HE2 0GJ sing 17 n n 
N1 CA1 0GJ sing 18 n n 
N1 H1 0GJ sing 19 n n 
CA1 C1 0GJ sing 20 n n 
CA1 HA2 0GJ sing 21 n n 
CA1 HA3 0GJ sing 22 n n 
C1 O1 0GJ doub 23 n n 
C1 N2 0GJ sing 24 n n 
N2 CA2 0GJ sing 25 n n 
N2 H3 0GJ sing 26 n n 
CA2 C2 0GJ sing 27 n n 
CA2 CB1 0GJ sing 28 n n 
CA2 HA1 0GJ sing 29 n n 
C2 O2 0GJ sing 30 n n 
C2 C3 0GJ sing 31 n n 
CB1 CG1 0GJ sing 32 n n 
CB1 HB21 0GJ sing 33 n n 
CB1 HB31 0GJ sing 34 n n 
CG1 CD1 0GJ sing 35 n n 
CG1 HG21 0GJ sing 36 n n 
CG1 HG31 0GJ sing 37 n n 
CD1 NE 0GJ sing 38 n n 
CD1 HD2 0GJ sing 39 n n 
CD1 HD3 0GJ sing 40 n n 
NE CZ 0GJ sing 41 n n 
NE HE 0GJ sing 42 n n 
CZ NH1 0GJ sing 43 n n 
CZ NH2 0GJ doub 44 n n 
NH1 HH11 0GJ sing 45 n n 
NH1 HH12 0GJ sing 46 n n 
NH2 HH21 0GJ sing 47 n n 
NH2 HH22 0GJ sing 48 n n 
C3 H11 0GJ sing 49 n n 
C3 H21 0GJ sing 50 n n 
CL C3 0GJ sing 51 n n 
C2 H27 0GJ sing 52 n n 
O2 H28 0GJ sing 53 n n 
#
_atom_sites.entry_id                     1LMW 
_atom_sites.fract_transf_matrix[1][1]    0.005659 
_atom_sites.fract_transf_matrix[1][2]    0.003267 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 0GJ B 1 1 1 0GJ GLU . 
F 3 0GJ D 1 1 1 0GJ GLU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 0GJ . . . F 3 121.149 137.808 -13.967 1 34.51 ? N 0GJ 1 D 1 
HETATM 2 C CA 0GJ . . . F 3 119.852 137.585 -13.246 1 30.63 ? CA 0GJ 1 D 1 
HETATM 3 C C 0GJ . . . F 3 120.021 136.487 -12.212 1 34.94 ? C 0GJ 1 D 1 
HETATM 4 O O 0GJ . . . F 3 120.234 135.319 -12.57 1 43.64 ? O 0GJ 1 D 1 
HETATM 5 C CB 0GJ . . . F 3 118.759 137.164 -14.228 1 27.41 ? CB 0GJ 1 D 1 
HETATM 6 C CG 0GJ . . . F 3 118.958 137.643 -15.651 1 21.22 ? CG 0GJ 1 D 1 
HETATM 7 C CD 0GJ . . . F 3 118.047 136.938 -16.626 1 22.77 ? CD 0GJ 1 D 1 
HETATM 8 O OE1 0GJ . . . F 3 117.123 136.229 -16.177 1 27.84 ? OE1 0GJ 1 D 1 
HETATM 9 O OE2 0GJ . . . F 3 118.26 137.063 -17.85 1 26.69 ? OE2 0GJ 1 D 1 
HETATM 10 N N1 0GJ . . . F 3 119.916 136.853 -10.936 1 33.26 ? N1 0GJ 1 D 1 
HETATM 11 C CA1 0GJ . . . F 3 120.063 135.881 -9.861 1 33.87 ? CA1 0GJ 1 D 1 
HETATM 12 C C1 0GJ . . . F 3 119.085 134.727 -9.975 1 35.42 ? C1 0GJ 1 D 1 
HETATM 13 O O1 0GJ . . . F 3 118.019 134.868 -10.57 1 37.06 ? O1 0GJ 1 D 1 
HETATM 14 N N2 0GJ . . . F 3 119.474 133.562 -9.464 1 40.78 ? N2 0GJ 1 D 1 
HETATM 15 C CA2 0GJ . . . F 3 118.61 132.375 -9.498 1 38.17 ? CA2 0GJ 1 D 1 
HETATM 16 C C2 0GJ . . . F 3 118.327 132.016 -8.12 1 38.23 ? C2 0GJ 1 D 1 
HETATM 17 O O2 0GJ . . . F 3 117.016 131.377 -7.966 1 44.36 ? O2 0GJ 1 D 1 
HETATM 18 C CB1 0GJ . . . F 3 119.217 131.242 -10.355 1 25.99 ? CB1 0GJ 1 D 1 
HETATM 19 C CG1 0GJ . . . F 3 119.144 131.49 -11.879 1 20.52 ? CG1 0GJ 1 D 1 
HETATM 20 C CD1 0GJ . . . F 3 120.153 130.631 -12.602 1 16.27 ? CD1 0GJ 1 D 1 
HETATM 21 N NE 0GJ . . . F 3 120.112 130.767 -14.054 1 12.44 ? NE 0GJ 1 D 1 
HETATM 22 C CZ 0GJ . . . F 3 120.851 130.013 -14.879 1 19 ? CZ 0GJ 1 D 1 
HETATM 23 N NH1 0GJ . . . F 3 121.665 129.084 -14.383 1 12.22 ? NH1 0GJ 1 D 1 
HETATM 24 N NH2 0GJ . . . F 3 120.802 130.194 -16.197 1 12.21 ? NH2 0GJ 1 D 1 
HETATM 25 C C3 0GJ . . . F 3 118.228 133.17 -7.088 1 42.57 ? C3 0GJ 1 D 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           456 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           25 
#