data_1LNB # _model_server_result.job_id aY643-aJs0xeZlw5dHOL-Q _model_server_result.datetime_utc '2024-11-06 00:29:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lnb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 1LNB # _exptl.entry_id 1LNB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LNB _cell.length_a 93.6 _cell.length_b 93.6 _cell.length_c 131.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL . E VAL 1321 1_555 C N LYS . E LYS 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? metalc ? metalc1 A OD1 ASP 57 E ASP 57 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A OD2 ASP 57 E ASP 57 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 A OD1 ASP 59 E ASP 59 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 A O GLN 61 E GLN 61 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A OD2 ASP 138 E ASP 138 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 A NE2 HIS 142 E HIS 142 1_555 D FE FE . E FE 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc7 A NE2 HIS 146 E HIS 146 1_555 D FE FE . E FE 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc8 A OE2 GLU 166 E GLU 166 1_555 D FE FE . E FE 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc9 A OE1 GLU 177 E GLU 177 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc10 A OE2 GLU 177 E GLU 177 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc11 A OE2 GLU 177 E GLU 177 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc12 A O ASN 183 E ASN 183 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc13 A OD1 ASP 185 E ASP 185 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc14 A OD2 ASP 185 E ASP 185 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc15 A O GLU 187 E GLU 187 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc16 A OE1 GLU 190 E GLU 190 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc17 A OE2 GLU 190 E GLU 190 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc18 A OE2 GLU 190 E GLU 190 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc19 A O TYR 193 E TYR 193 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc20 A O THR 194 E THR 194 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc21 A OG1 THR 194 E THR 194 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc22 A O ILE 197 E ILE 197 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc23 A OD1 ASP 200 E ASP 200 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc24 D FE FE . E FE 900 1_555 J O HOH . E HOH 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc25 D FE FE . E FE 900 1_555 J O HOH . E HOH 1480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc26 E CA CA . E CA 901 1_555 J O HOH . E HOH 1342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc27 F CA CA . E CA 902 1_555 J O HOH . E HOH 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc28 F CA CA . E CA 902 1_555 J O HOH . E HOH 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc29 G CA CA . E CA 903 1_555 J O HOH . E HOH 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc30 G CA CA . E CA 903 1_555 J O HOH . E HOH 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc31 G CA CA . E CA 903 1_555 J O HOH . E HOH 1328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc32 H CA CA . E CA 904 1_555 J O HOH . E HOH 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc33 H CA CA . E CA 904 1_555 J O HOH . E HOH 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LNB _atom_sites.fract_transf_matrix[1][1] 0.010684 _atom_sites.fract_transf_matrix[1][2] 0.006168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VAL E 1 1321 1321 VAL VAL . C 3 LYS E 1 1322 1322 LYS LYS . D 4 FE E 1 900 900 FE FE . E 5 CA E 1 901 901 CA CA . F 5 CA E 1 902 902 CA CA . G 5 CA E 1 903 903 CA CA . H 5 CA E 1 904 904 CA CA . I 6 DMS E 1 320 320 DMS DMS . J 7 HOH E 1 1323 905 HOH HOH . J 7 HOH E 2 1324 906 HOH HOH . J 7 HOH E 3 1325 907 HOH HOH . J 7 HOH E 4 1326 908 HOH HOH . J 7 HOH E 5 1327 909 HOH HOH . J 7 HOH E 6 1328 910 HOH HOH . J 7 HOH E 7 1329 911 HOH HOH . J 7 HOH E 8 1330 912 HOH HOH . J 7 HOH E 9 1331 913 HOH HOH . J 7 HOH E 10 1332 914 HOH HOH . J 7 HOH E 11 1333 915 HOH HOH . J 7 HOH E 12 1334 916 HOH HOH . J 7 HOH E 13 1335 917 HOH HOH . J 7 HOH E 14 1336 918 HOH HOH . J 7 HOH E 15 1337 919 HOH HOH . J 7 HOH E 16 1338 920 HOH HOH . J 7 HOH E 17 1339 921 HOH HOH . J 7 HOH E 18 1340 922 HOH HOH . J 7 HOH E 19 1341 923 HOH HOH . J 7 HOH E 20 1342 924 HOH HOH . J 7 HOH E 21 1343 925 HOH HOH . J 7 HOH E 22 1344 926 HOH HOH . J 7 HOH E 23 1345 927 HOH HOH . J 7 HOH E 24 1346 928 HOH HOH . J 7 HOH E 25 1347 929 HOH HOH . J 7 HOH E 26 1348 930 HOH HOH . J 7 HOH E 27 1349 931 HOH HOH . J 7 HOH E 28 1350 932 HOH HOH . J 7 HOH E 29 1351 933 HOH HOH . J 7 HOH E 30 1352 934 HOH HOH . J 7 HOH E 31 1353 935 HOH HOH . J 7 HOH E 32 1354 936 HOH HOH . J 7 HOH E 33 1355 937 HOH HOH . J 7 HOH E 34 1356 938 HOH HOH . J 7 HOH E 35 1357 939 HOH HOH . J 7 HOH E 36 1358 940 HOH HOH . J 7 HOH E 37 1359 941 HOH HOH . J 7 HOH E 38 1360 942 HOH HOH . J 7 HOH E 39 1361 943 HOH HOH . J 7 HOH E 40 1362 944 HOH HOH . J 7 HOH E 41 1363 945 HOH HOH . J 7 HOH E 42 1364 946 HOH HOH . J 7 HOH E 43 1365 947 HOH HOH . J 7 HOH E 44 1366 948 HOH HOH . J 7 HOH E 45 1367 949 HOH HOH . J 7 HOH E 46 1368 950 HOH HOH . J 7 HOH E 47 1369 951 HOH HOH . J 7 HOH E 48 1370 952 HOH HOH . J 7 HOH E 49 1371 953 HOH HOH . J 7 HOH E 50 1372 954 HOH HOH . J 7 HOH E 51 1373 955 HOH HOH . J 7 HOH E 52 1374 956 HOH HOH . J 7 HOH E 53 1375 957 HOH HOH . J 7 HOH E 54 1376 958 HOH HOH . J 7 HOH E 55 1377 959 HOH HOH . J 7 HOH E 56 1378 960 HOH HOH . J 7 HOH E 57 1379 961 HOH HOH . J 7 HOH E 58 1380 962 HOH HOH . J 7 HOH E 59 1381 963 HOH HOH . J 7 HOH E 60 1382 964 HOH HOH . J 7 HOH E 61 1383 965 HOH HOH . J 7 HOH E 62 1384 966 HOH HOH . J 7 HOH E 63 1385 967 HOH HOH . J 7 HOH E 64 1386 968 HOH HOH . J 7 HOH E 65 1387 969 HOH HOH . J 7 HOH E 66 1388 970 HOH HOH . J 7 HOH E 67 1389 971 HOH HOH . J 7 HOH E 68 1390 972 HOH HOH . J 7 HOH E 69 1391 973 HOH HOH . J 7 HOH E 70 1392 974 HOH HOH . J 7 HOH E 71 1393 975 HOH HOH . J 7 HOH E 72 1394 976 HOH HOH . J 7 HOH E 73 1395 977 HOH HOH . J 7 HOH E 74 1396 978 HOH HOH . J 7 HOH E 75 1397 979 HOH HOH . J 7 HOH E 76 1398 980 HOH HOH . J 7 HOH E 77 1399 981 HOH HOH . J 7 HOH E 78 1400 982 HOH HOH . J 7 HOH E 79 1401 983 HOH HOH . J 7 HOH E 80 1402 984 HOH HOH . J 7 HOH E 81 1403 985 HOH HOH . J 7 HOH E 82 1404 986 HOH HOH . J 7 HOH E 83 1405 987 HOH HOH . J 7 HOH E 84 1406 988 HOH HOH . J 7 HOH E 85 1407 989 HOH HOH . J 7 HOH E 86 1408 990 HOH HOH . J 7 HOH E 87 1409 991 HOH HOH . J 7 HOH E 88 1410 992 HOH HOH . J 7 HOH E 89 1411 993 HOH HOH . J 7 HOH E 90 1412 994 HOH HOH . J 7 HOH E 91 1413 995 HOH HOH . J 7 HOH E 92 1414 996 HOH HOH . J 7 HOH E 93 1415 997 HOH HOH . J 7 HOH E 94 1416 998 HOH HOH . J 7 HOH E 95 1417 999 HOH HOH . J 7 HOH E 96 1418 1000 HOH HOH . J 7 HOH E 97 1419 1001 HOH HOH . J 7 HOH E 98 1420 1002 HOH HOH . J 7 HOH E 99 1421 1003 HOH HOH . J 7 HOH E 100 1422 1004 HOH HOH . J 7 HOH E 101 1423 1005 HOH HOH . J 7 HOH E 102 1424 1006 HOH HOH . J 7 HOH E 103 1425 1007 HOH HOH . J 7 HOH E 104 1426 1008 HOH HOH . J 7 HOH E 105 1427 1009 HOH HOH . J 7 HOH E 106 1428 1010 HOH HOH . J 7 HOH E 107 1429 1011 HOH HOH . J 7 HOH E 108 1430 1012 HOH HOH . J 7 HOH E 109 1431 1013 HOH HOH . J 7 HOH E 110 1432 1014 HOH HOH . J 7 HOH E 111 1433 1015 HOH HOH . J 7 HOH E 112 1434 1016 HOH HOH . J 7 HOH E 113 1435 1017 HOH HOH . J 7 HOH E 114 1436 1018 HOH HOH . J 7 HOH E 115 1437 1019 HOH HOH . J 7 HOH E 116 1438 1020 HOH HOH . J 7 HOH E 117 1439 1021 HOH HOH . J 7 HOH E 118 1440 1022 HOH HOH . J 7 HOH E 119 1441 1023 HOH HOH . J 7 HOH E 120 1442 1024 HOH HOH . J 7 HOH E 121 1443 1025 HOH HOH . J 7 HOH E 122 1444 1026 HOH HOH . J 7 HOH E 123 1445 1027 HOH HOH . J 7 HOH E 124 1446 1028 HOH HOH . J 7 HOH E 125 1447 1029 HOH HOH . J 7 HOH E 126 1448 1030 HOH HOH . J 7 HOH E 127 1449 1031 HOH HOH . J 7 HOH E 128 1450 1032 HOH HOH . J 7 HOH E 129 1451 1033 HOH HOH . J 7 HOH E 130 1452 1034 HOH HOH . J 7 HOH E 131 1453 1035 HOH HOH . J 7 HOH E 132 1454 1036 HOH HOH . J 7 HOH E 133 1455 1037 HOH HOH . J 7 HOH E 134 1456 1038 HOH HOH . J 7 HOH E 135 1457 1039 HOH HOH . J 7 HOH E 136 1458 1040 HOH HOH . J 7 HOH E 137 1459 1041 HOH HOH . J 7 HOH E 138 1460 1042 HOH HOH . J 7 HOH E 139 1461 1043 HOH HOH . J 7 HOH E 140 1462 1044 HOH HOH . J 7 HOH E 141 1463 1045 HOH HOH . J 7 HOH E 142 1464 1046 HOH HOH . J 7 HOH E 143 1465 1047 HOH HOH . J 7 HOH E 144 1466 1048 HOH HOH . J 7 HOH E 145 1467 1049 HOH HOH . J 7 HOH E 146 1468 1050 HOH HOH . J 7 HOH E 147 1469 1051 HOH HOH . J 7 HOH E 148 1470 1052 HOH HOH . J 7 HOH E 149 1471 1053 HOH HOH . J 7 HOH E 150 1472 1054 HOH HOH . J 7 HOH E 151 1473 1055 HOH HOH . J 7 HOH E 152 1474 1056 HOH HOH . J 7 HOH E 153 1475 1057 HOH HOH . J 7 HOH E 154 1476 1058 HOH HOH . J 7 HOH E 155 1477 1059 HOH HOH . J 7 HOH E 156 1478 1060 HOH HOH . J 7 HOH E 157 1479 1 HOH HOH . J 7 HOH E 158 1480 2 HOH HOH . J 7 HOH E 159 1481 390 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 41.394 _atom_site.Cartn_y 50.601 _atom_site.Cartn_z 8.433 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 902 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #