data_1LNE # _model_server_result.job_id BsIynjthMRhuMZ11eefKlg _model_server_result.datetime_utc '2024-11-06 00:45:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 1LNE # _exptl.entry_id 1LNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LNE _cell.length_a 93.888 _cell.length_b 93.888 _cell.length_c 131.164 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL . E VAL 1321 1_555 C N LYS . E LYS 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A OD1 ASP 57 E ASP 57 1_555 G CD CD . E CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 A OD2 ASP 57 E ASP 57 1_555 G CD CD . E CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc3 A OD1 ASP 59 E ASP 59 1_555 G CD CD . E CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A O GLN 61 E GLN 61 1_555 G CD CD . E CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 A OD2 ASP 138 E ASP 138 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 A NE2 HIS 142 E HIS 142 1_555 D CD CD . E CD 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc7 A OE2 GLU 143 E GLU 143 1_555 D CD CD . E CD 900 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc8 A NE2 HIS 146 E HIS 146 1_555 D CD CD . E CD 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 A OE2 GLU 166 E GLU 166 1_555 D CD CD . E CD 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc10 A OE1 GLU 166 E GLU 166 1_555 D CD CD . E CD 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc11 A OE1 GLU 177 E GLU 177 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc12 A OE2 GLU 177 E GLU 177 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc13 A OE2 GLU 177 E GLU 177 1_555 F CD CD . E CD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc14 A O ASN 183 E ASN 183 1_555 F CD CD . E CD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc15 A OD1 ASP 185 E ASP 185 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc16 A OD2 ASP 185 E ASP 185 1_555 F CD CD . E CD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc17 A O GLU 187 E GLU 187 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc18 A OE1 GLU 190 E GLU 190 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc19 A OE2 GLU 190 E GLU 190 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc20 A OE2 GLU 190 E GLU 190 1_555 F CD CD . E CD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc21 A O TYR 193 E TYR 193 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc22 A O THR 194 E THR 194 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc23 A OG1 THR 194 E THR 194 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc24 A O ILE 197 E ILE 197 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc25 A OD1 ASP 200 E ASP 200 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc26 A OD1 ASP 213 E ASP 213 1_555 I CD CD . E CD 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc27 A OD2 ASP 213 E ASP 213 1_555 I CD CD . E CD 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc28 A O HIS 231 E HIS 231 1_555 I CD CD . E CD 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc29 D CD CD . E CD 900 1_555 K O HOH . E HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc30 D CD CD . E CD 900 1_555 K O HOH . E HOH 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc31 E CA CA . E CA 901 1_555 K O HOH . E HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc32 F CD CD . E CD 902 1_555 K O HOH . E HOH 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc33 F CD CD . E CD 902 1_555 K O HOH . E HOH 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc34 G CD CD . E CD 903 1_555 K O HOH . E HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc35 G CD CD . E CD 903 1_555 K O HOH . E HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc36 G CD CD . E CD 903 1_555 K O HOH . E HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc37 H CA CA . E CA 904 1_555 K O HOH . E HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc38 H CA CA . E CA 904 1_555 K O HOH . E HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc39 I CD CD . E CD 905 1_555 K O HOH . E HOH 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc40 I CD CD . E CD 905 1_555 K O HOH . E HOH 1056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc41 I CD CD . E CD 905 1_555 K O HOH . E HOH 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LNE _atom_sites.fract_transf_matrix[1][1] 0.010651 _atom_sites.fract_transf_matrix[1][2] 0.006149 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VAL E 1 1321 1321 VAL VAL . C 3 LYS E 1 1322 1322 LYS LYS . D 4 CD E 1 900 900 CD CD . E 5 CA E 1 901 901 CA CA . F 4 CD E 1 902 902 CD CD . G 4 CD E 1 903 903 CD CD . H 5 CA E 1 904 904 CA CA . I 4 CD E 1 905 905 CD CD . J 6 DMS E 1 320 320 DMS DMS . K 7 HOH E 1 906 906 HOH HOH . K 7 HOH E 2 907 907 HOH HOH . K 7 HOH E 3 908 908 HOH HOH . K 7 HOH E 4 909 909 HOH HOH . K 7 HOH E 5 910 910 HOH HOH . K 7 HOH E 6 911 911 HOH HOH . K 7 HOH E 7 912 912 HOH HOH . K 7 HOH E 8 913 913 HOH HOH . K 7 HOH E 9 914 914 HOH HOH . K 7 HOH E 10 915 915 HOH HOH . K 7 HOH E 11 916 916 HOH HOH . K 7 HOH E 12 917 917 HOH HOH . K 7 HOH E 13 918 918 HOH HOH . K 7 HOH E 14 919 919 HOH HOH . K 7 HOH E 15 920 920 HOH HOH . K 7 HOH E 16 921 921 HOH HOH . K 7 HOH E 17 922 922 HOH HOH . K 7 HOH E 18 923 923 HOH HOH . K 7 HOH E 19 924 924 HOH HOH . K 7 HOH E 20 925 925 HOH HOH . K 7 HOH E 21 926 926 HOH HOH . K 7 HOH E 22 927 927 HOH HOH . K 7 HOH E 23 928 928 HOH HOH . K 7 HOH E 24 929 929 HOH HOH . K 7 HOH E 25 930 930 HOH HOH . K 7 HOH E 26 931 931 HOH HOH . K 7 HOH E 27 932 932 HOH HOH . K 7 HOH E 28 933 933 HOH HOH . K 7 HOH E 29 934 934 HOH HOH . K 7 HOH E 30 935 935 HOH HOH . K 7 HOH E 31 936 936 HOH HOH . K 7 HOH E 32 937 937 HOH HOH . K 7 HOH E 33 938 938 HOH HOH . K 7 HOH E 34 939 939 HOH HOH . K 7 HOH E 35 940 940 HOH HOH . K 7 HOH E 36 941 941 HOH HOH . K 7 HOH E 37 942 942 HOH HOH . K 7 HOH E 38 943 943 HOH HOH . K 7 HOH E 39 944 944 HOH HOH . K 7 HOH E 40 945 945 HOH HOH . K 7 HOH E 41 946 946 HOH HOH . K 7 HOH E 42 947 947 HOH HOH . K 7 HOH E 43 948 948 HOH HOH . K 7 HOH E 44 949 949 HOH HOH . K 7 HOH E 45 950 950 HOH HOH . K 7 HOH E 46 951 951 HOH HOH . K 7 HOH E 47 952 952 HOH HOH . K 7 HOH E 48 953 953 HOH HOH . K 7 HOH E 49 954 954 HOH HOH . K 7 HOH E 50 955 955 HOH HOH . K 7 HOH E 51 956 956 HOH HOH . K 7 HOH E 52 957 957 HOH HOH . K 7 HOH E 53 958 958 HOH HOH . K 7 HOH E 54 959 959 HOH HOH . K 7 HOH E 55 960 960 HOH HOH . K 7 HOH E 56 961 961 HOH HOH . K 7 HOH E 57 962 962 HOH HOH . K 7 HOH E 58 963 963 HOH HOH . K 7 HOH E 59 964 964 HOH HOH . K 7 HOH E 60 965 965 HOH HOH . K 7 HOH E 61 966 966 HOH HOH . K 7 HOH E 62 967 967 HOH HOH . K 7 HOH E 63 968 968 HOH HOH . K 7 HOH E 64 969 969 HOH HOH . K 7 HOH E 65 970 970 HOH HOH . K 7 HOH E 66 971 971 HOH HOH . K 7 HOH E 67 972 972 HOH HOH . K 7 HOH E 68 973 973 HOH HOH . K 7 HOH E 69 974 974 HOH HOH . K 7 HOH E 70 975 975 HOH HOH . K 7 HOH E 71 976 976 HOH HOH . K 7 HOH E 72 977 977 HOH HOH . K 7 HOH E 73 978 978 HOH HOH . K 7 HOH E 74 979 979 HOH HOH . K 7 HOH E 75 980 980 HOH HOH . K 7 HOH E 76 981 981 HOH HOH . K 7 HOH E 77 982 982 HOH HOH . K 7 HOH E 78 983 983 HOH HOH . K 7 HOH E 79 984 984 HOH HOH . K 7 HOH E 80 985 985 HOH HOH . K 7 HOH E 81 986 986 HOH HOH . K 7 HOH E 82 987 987 HOH HOH . K 7 HOH E 83 988 988 HOH HOH . K 7 HOH E 84 989 989 HOH HOH . K 7 HOH E 85 990 990 HOH HOH . K 7 HOH E 86 991 991 HOH HOH . K 7 HOH E 87 992 992 HOH HOH . K 7 HOH E 88 993 993 HOH HOH . K 7 HOH E 89 994 994 HOH HOH . K 7 HOH E 90 995 995 HOH HOH . K 7 HOH E 91 996 996 HOH HOH . K 7 HOH E 92 997 997 HOH HOH . K 7 HOH E 93 998 998 HOH HOH . K 7 HOH E 94 999 999 HOH HOH . K 7 HOH E 95 1000 1000 HOH HOH . K 7 HOH E 96 1001 1001 HOH HOH . K 7 HOH E 97 1002 1002 HOH HOH . K 7 HOH E 98 1003 1003 HOH HOH . K 7 HOH E 99 1004 1004 HOH HOH . K 7 HOH E 100 1005 1005 HOH HOH . K 7 HOH E 101 1006 1006 HOH HOH . K 7 HOH E 102 1007 1007 HOH HOH . K 7 HOH E 103 1008 1008 HOH HOH . K 7 HOH E 104 1009 1009 HOH HOH . K 7 HOH E 105 1010 1010 HOH HOH . K 7 HOH E 106 1011 1011 HOH HOH . K 7 HOH E 107 1012 1012 HOH HOH . K 7 HOH E 108 1013 1013 HOH HOH . K 7 HOH E 109 1014 1014 HOH HOH . K 7 HOH E 110 1015 1015 HOH HOH . K 7 HOH E 111 1016 1016 HOH HOH . K 7 HOH E 112 1017 1017 HOH HOH . K 7 HOH E 113 1018 1018 HOH HOH . K 7 HOH E 114 1019 1019 HOH HOH . K 7 HOH E 115 1020 1020 HOH HOH . K 7 HOH E 116 1021 1021 HOH HOH . K 7 HOH E 117 1022 1022 HOH HOH . K 7 HOH E 118 1023 1023 HOH HOH . K 7 HOH E 119 1024 1024 HOH HOH . K 7 HOH E 120 1025 1025 HOH HOH . K 7 HOH E 121 1026 1026 HOH HOH . K 7 HOH E 122 1027 1027 HOH HOH . K 7 HOH E 123 1028 1028 HOH HOH . K 7 HOH E 124 1029 1029 HOH HOH . K 7 HOH E 125 1030 1030 HOH HOH . K 7 HOH E 126 1031 1031 HOH HOH . K 7 HOH E 127 1032 1032 HOH HOH . K 7 HOH E 128 1033 1033 HOH HOH . K 7 HOH E 129 1034 1034 HOH HOH . K 7 HOH E 130 1035 1035 HOH HOH . K 7 HOH E 131 1036 1036 HOH HOH . K 7 HOH E 132 1037 1037 HOH HOH . K 7 HOH E 133 1038 1038 HOH HOH . K 7 HOH E 134 1039 1039 HOH HOH . K 7 HOH E 135 1040 1040 HOH HOH . K 7 HOH E 136 1041 1041 HOH HOH . K 7 HOH E 137 1042 1042 HOH HOH . K 7 HOH E 138 1043 1043 HOH HOH . K 7 HOH E 139 1044 1044 HOH HOH . K 7 HOH E 140 1045 1045 HOH HOH . K 7 HOH E 141 1046 1046 HOH HOH . K 7 HOH E 142 1047 1047 HOH HOH . K 7 HOH E 143 1048 1048 HOH HOH . K 7 HOH E 144 1049 1049 HOH HOH . K 7 HOH E 145 1050 1050 HOH HOH . K 7 HOH E 146 1051 1051 HOH HOH . K 7 HOH E 147 1052 1052 HOH HOH . K 7 HOH E 148 1053 1053 HOH HOH . K 7 HOH E 149 1054 1054 HOH HOH . K 7 HOH E 150 1055 1055 HOH HOH . K 7 HOH E 151 1056 1056 HOH HOH . K 7 HOH E 152 1057 1057 HOH HOH . K 7 HOH E 153 1058 1058 HOH HOH . K 7 HOH E 154 1059 1059 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 41.623 _atom_site.Cartn_y 50.704 _atom_site.Cartn_z 8.483 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 902 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #