data_1LNF # _model_server_result.job_id NwgC8mBWymbGjgd1NHAlSA _model_server_result.datetime_utc '2024-11-26 12:15:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 1LNF # _exptl.entry_id 1LNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LNF _cell.length_a 93.85 _cell.length_b 93.85 _cell.length_c 131.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL . E VAL 1321 1_555 C N LYS . E LYS 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A OD1 ASP 57 E ASP 57 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc2 A OD2 ASP 57 E ASP 57 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 A OD1 ASP 59 E ASP 59 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A O GLN 61 E GLN 61 1_555 G CA CA . E CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc5 A OD2 ASP 138 E ASP 138 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A NE2 HIS 142 E HIS 142 1_555 D ZN ZN . E ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc7 A NE2 HIS 146 E HIS 146 1_555 D ZN ZN . E ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc8 A OE2 GLU 166 E GLU 166 1_555 D ZN ZN . E ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc9 A OE1 GLU 166 E GLU 166 1_555 D ZN ZN . E ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 A OE1 GLU 177 E GLU 177 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc11 A OE2 GLU 177 E GLU 177 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc12 A OE2 GLU 177 E GLU 177 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc13 A O ASN 183 E ASN 183 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc14 A OD1 ASP 185 E ASP 185 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc15 A OD2 ASP 185 E ASP 185 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc16 A O GLU 187 E GLU 187 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc17 A OE1 GLU 190 E GLU 190 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc18 A OE2 GLU 190 E GLU 190 1_555 E CA CA . E CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc19 A OE2 GLU 190 E GLU 190 1_555 F CA CA . E CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc20 A O TYR 193 E TYR 193 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc21 A O THR 194 E THR 194 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc22 A OG1 THR 194 E THR 194 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc23 A O ILE 197 E ILE 197 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc24 A OD1 ASP 200 E ASP 200 1_555 H CA CA . E CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc25 D ZN ZN . E ZN 800 1_555 J O HOH . E HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc26 D ZN ZN . E ZN 800 1_555 J O HOH . E HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc27 E CA CA . E CA 901 1_555 J O HOH . E HOH 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc28 F CA CA . E CA 902 1_555 J O HOH . E HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc29 F CA CA . E CA 902 1_555 J O HOH . E HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc30 G CA CA . E CA 903 1_555 J O HOH . E HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc31 G CA CA . E CA 903 1_555 J O HOH . E HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc32 G CA CA . E CA 903 1_555 J O HOH . E HOH 966 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc33 H CA CA . E CA 904 1_555 J O HOH . E HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc34 H CA CA . E CA 904 1_555 J O HOH . E HOH 932 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LNF _atom_sites.fract_transf_matrix[1][1] 0.010655 _atom_sites.fract_transf_matrix[1][2] 0.006152 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VAL E 1 1321 1321 VAL VAL . C 3 LYS E 1 1322 1322 LYS LYS . D 4 ZN E 1 800 800 ZN ZN . E 5 CA E 1 901 901 CA CA . F 5 CA E 1 902 902 CA CA . G 5 CA E 1 903 903 CA CA . H 5 CA E 1 904 904 CA CA . I 6 DMS E 1 320 320 DMS DMS . J 7 HOH E 1 390 390 HOH HOH . J 7 HOH E 2 905 905 HOH HOH . J 7 HOH E 3 906 906 HOH HOH . J 7 HOH E 4 907 907 HOH HOH . J 7 HOH E 5 908 908 HOH HOH . J 7 HOH E 6 909 909 HOH HOH . J 7 HOH E 7 910 910 HOH HOH . J 7 HOH E 8 911 911 HOH HOH . J 7 HOH E 9 912 912 HOH HOH . J 7 HOH E 10 913 913 HOH HOH . J 7 HOH E 11 914 914 HOH HOH . J 7 HOH E 12 915 915 HOH HOH . J 7 HOH E 13 916 916 HOH HOH . J 7 HOH E 14 917 917 HOH HOH . J 7 HOH E 15 918 918 HOH HOH . J 7 HOH E 16 919 919 HOH HOH . J 7 HOH E 17 920 920 HOH HOH . J 7 HOH E 18 921 921 HOH HOH . J 7 HOH E 19 922 922 HOH HOH . J 7 HOH E 20 923 923 HOH HOH . J 7 HOH E 21 924 924 HOH HOH . J 7 HOH E 22 925 925 HOH HOH . J 7 HOH E 23 926 926 HOH HOH . J 7 HOH E 24 927 927 HOH HOH . J 7 HOH E 25 928 928 HOH HOH . J 7 HOH E 26 929 929 HOH HOH . J 7 HOH E 27 930 930 HOH HOH . J 7 HOH E 28 931 931 HOH HOH . J 7 HOH E 29 932 932 HOH HOH . J 7 HOH E 30 933 933 HOH HOH . J 7 HOH E 31 934 934 HOH HOH . J 7 HOH E 32 935 935 HOH HOH . J 7 HOH E 33 936 936 HOH HOH . J 7 HOH E 34 937 937 HOH HOH . J 7 HOH E 35 938 938 HOH HOH . J 7 HOH E 36 939 939 HOH HOH . J 7 HOH E 37 940 940 HOH HOH . J 7 HOH E 38 941 941 HOH HOH . J 7 HOH E 39 942 942 HOH HOH . J 7 HOH E 40 943 943 HOH HOH . J 7 HOH E 41 944 944 HOH HOH . J 7 HOH E 42 945 945 HOH HOH . J 7 HOH E 43 946 946 HOH HOH . J 7 HOH E 44 947 947 HOH HOH . J 7 HOH E 45 948 948 HOH HOH . J 7 HOH E 46 949 949 HOH HOH . J 7 HOH E 47 950 950 HOH HOH . J 7 HOH E 48 951 951 HOH HOH . J 7 HOH E 49 952 952 HOH HOH . J 7 HOH E 50 953 953 HOH HOH . J 7 HOH E 51 954 954 HOH HOH . J 7 HOH E 52 955 955 HOH HOH . J 7 HOH E 53 956 956 HOH HOH . J 7 HOH E 54 957 957 HOH HOH . J 7 HOH E 55 958 958 HOH HOH . J 7 HOH E 56 959 959 HOH HOH . J 7 HOH E 57 960 960 HOH HOH . J 7 HOH E 58 961 961 HOH HOH . J 7 HOH E 59 962 962 HOH HOH . J 7 HOH E 60 963 963 HOH HOH . J 7 HOH E 61 964 964 HOH HOH . J 7 HOH E 62 965 965 HOH HOH . J 7 HOH E 63 966 966 HOH HOH . J 7 HOH E 64 967 967 HOH HOH . J 7 HOH E 65 968 968 HOH HOH . J 7 HOH E 66 969 969 HOH HOH . J 7 HOH E 67 970 970 HOH HOH . J 7 HOH E 68 971 971 HOH HOH . J 7 HOH E 69 972 972 HOH HOH . J 7 HOH E 70 973 973 HOH HOH . J 7 HOH E 71 974 974 HOH HOH . J 7 HOH E 72 975 975 HOH HOH . J 7 HOH E 73 976 976 HOH HOH . J 7 HOH E 74 977 977 HOH HOH . J 7 HOH E 75 978 978 HOH HOH . J 7 HOH E 76 979 979 HOH HOH . J 7 HOH E 77 980 980 HOH HOH . J 7 HOH E 78 981 981 HOH HOH . J 7 HOH E 79 982 982 HOH HOH . J 7 HOH E 80 983 983 HOH HOH . J 7 HOH E 81 984 984 HOH HOH . J 7 HOH E 82 985 985 HOH HOH . J 7 HOH E 83 986 986 HOH HOH . J 7 HOH E 84 987 987 HOH HOH . J 7 HOH E 85 988 988 HOH HOH . J 7 HOH E 86 989 989 HOH HOH . J 7 HOH E 87 990 990 HOH HOH . J 7 HOH E 88 991 991 HOH HOH . J 7 HOH E 89 992 992 HOH HOH . J 7 HOH E 90 993 993 HOH HOH . J 7 HOH E 91 994 994 HOH HOH . J 7 HOH E 92 995 995 HOH HOH . J 7 HOH E 93 996 996 HOH HOH . J 7 HOH E 94 997 997 HOH HOH . J 7 HOH E 95 998 998 HOH HOH . J 7 HOH E 96 999 999 HOH HOH . J 7 HOH E 97 1000 1000 HOH HOH . J 7 HOH E 98 1001 1001 HOH HOH . J 7 HOH E 99 1002 1002 HOH HOH . J 7 HOH E 100 1003 1003 HOH HOH . J 7 HOH E 101 1004 1004 HOH HOH . J 7 HOH E 102 1005 1005 HOH HOH . J 7 HOH E 103 1006 1006 HOH HOH . J 7 HOH E 104 1007 1007 HOH HOH . J 7 HOH E 105 1008 1008 HOH HOH . J 7 HOH E 106 1009 1009 HOH HOH . J 7 HOH E 107 1010 1010 HOH HOH . J 7 HOH E 108 1011 1011 HOH HOH . J 7 HOH E 109 1012 1012 HOH HOH . J 7 HOH E 110 1013 1013 HOH HOH . J 7 HOH E 111 1014 1014 HOH HOH . J 7 HOH E 112 1015 1015 HOH HOH . J 7 HOH E 113 1016 1016 HOH HOH . J 7 HOH E 114 1017 1017 HOH HOH . J 7 HOH E 115 1018 1018 HOH HOH . J 7 HOH E 116 1019 1019 HOH HOH . J 7 HOH E 117 1020 1020 HOH HOH . J 7 HOH E 118 1021 1021 HOH HOH . J 7 HOH E 119 1022 1022 HOH HOH . J 7 HOH E 120 1023 1023 HOH HOH . J 7 HOH E 121 1024 1024 HOH HOH . J 7 HOH E 122 1025 1025 HOH HOH . J 7 HOH E 123 1026 1026 HOH HOH . J 7 HOH E 124 1027 1027 HOH HOH . J 7 HOH E 125 1028 1028 HOH HOH . J 7 HOH E 126 1029 1029 HOH HOH . J 7 HOH E 127 1030 1030 HOH HOH . J 7 HOH E 128 1031 1031 HOH HOH . J 7 HOH E 129 1032 1032 HOH HOH . J 7 HOH E 130 1033 1033 HOH HOH . J 7 HOH E 131 1034 1034 HOH HOH . J 7 HOH E 132 1035 1035 HOH HOH . J 7 HOH E 133 1036 1036 HOH HOH . J 7 HOH E 134 1037 1037 HOH HOH . J 7 HOH E 135 1038 1038 HOH HOH . J 7 HOH E 136 1039 1039 HOH HOH . J 7 HOH E 137 1040 1040 HOH HOH . J 7 HOH E 138 1041 1041 HOH HOH . J 7 HOH E 139 1042 1042 HOH HOH . J 7 HOH E 140 1043 1043 HOH HOH . J 7 HOH E 141 1044 1044 HOH HOH . J 7 HOH E 142 1045 1045 HOH HOH . J 7 HOH E 143 1046 1046 HOH HOH . J 7 HOH E 144 1047 1047 HOH HOH . J 7 HOH E 145 1048 1048 HOH HOH . J 7 HOH E 146 1049 1049 HOH HOH . J 7 HOH E 147 1050 1050 HOH HOH . J 7 HOH E 148 1051 1051 HOH HOH . J 7 HOH E 149 1052 1052 HOH HOH . J 7 HOH E 150 1053 1053 HOH HOH . J 7 HOH E 151 1054 1054 HOH HOH . J 7 HOH E 152 1055 1055 HOH HOH . J 7 HOH E 153 1056 1056 HOH HOH . J 7 HOH E 154 1057 1057 HOH HOH . J 7 HOH E 155 1058 1058 HOH HOH . J 7 HOH E 156 1059 1059 HOH HOH . J 7 HOH E 157 1060 1060 HOH HOH . J 7 HOH E 158 1061 1061 HOH HOH . J 7 HOH E 159 1062 1062 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 41.815 _atom_site.Cartn_y 49.745 _atom_site.Cartn_z 4.91 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 901 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #