data_1LNL # _model_server_result.job_id E_nV1GZfZunrrmByC5HzQQ _model_server_result.datetime_utc '2024-12-02 06:58:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":5503}' # _entry.id 1LNL # _exptl.entry_id 1LNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LNL _cell.length_a 105.486 _cell.length_b 105.486 _cell.length_c 374.988 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 105.486 105.486 562.482 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 47 1_555 A SG CYS 61 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 174 A CYS 171 1_555 A SG CYS 241 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? disulf ? disulf3 A SG CYS 331 A CYS 328 1_555 A SG CYS 337 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 50 B CYS 47 1_555 B SG CYS 61 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? disulf ? disulf5 B SG CYS 174 B CYS 171 1_555 B SG CYS 241 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf6 B SG CYS 331 B CYS 328 1_555 B SG CYS 337 B CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 C SG CYS 50 C CYS 47 1_555 C SG CYS 61 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf8 C SG CYS 174 C CYS 171 1_555 C SG CYS 241 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? disulf ? disulf9 C SG CYS 331 C CYS 328 1_555 C SG CYS 337 C CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A ND1 HIS 2 A HIS -2 1_555 G CU CU . B CU 5503 6_456 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc2 A NE2 HIS 44 A HIS 41 1_555 E CU CU . A CU 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc3 A NE2 HIS 73 A HIS 70 1_555 E CU CU . A CU 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 A NE2 HIS 184 A HIS 181 1_555 F CU CU . A CU 5012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 A NE2 HIS 188 A HIS 185 1_555 F CU CU . A CU 5012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 A NE2 HIS 215 A HIS 212 1_555 F CU CU . A CU 5012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 B NE2 HIS 2 B HIS -2 1_555 J CU CU . B CU 5506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc8 B NE ARG 3 B ARG -1 1_555 J CU CU . B CU 5506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 B NH2 ARG 3 B ARG -1 1_555 J CU CU . B CU 5506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc10 B NE2 HIS 44 B HIS 41 1_555 H CU CU . B CU 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc11 B NE2 HIS 64 B HIS 61 1_555 H CU CU . B CU 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 B NE2 HIS 73 B HIS 70 1_555 H CU CU . B CU 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc13 B NE2 HIS 120 B HIS 117 1_555 G CU CU . B CU 5503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 B NE2 HIS 188 B HIS 185 1_555 I CU CU . B CU 5015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc15 B NE2 HIS 215 B HIS 212 1_555 I CU CU . B CU 5015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc16 B NE2 HIS 280 B HIS 277 1_555 O CU CU . C CU 5509 8_676 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc17 H CU CU . B CU 5004 1_555 I CU CU . B CU 5015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc18 J CU CU . B CU 5506 8_766 C NE2 HIS 280 C HIS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc19 C ND1 HIS 2 C HIS -2 1_555 O CU CU . C CU 5509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc20 C NE ARG 3 C ARG -1 1_555 O CU CU . C CU 5509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc21 C NH2 ARG 3 C ARG -1 1_555 O CU CU . C CU 5509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc22 C NE2 HIS 44 C HIS 41 1_555 M CU CU . C CU 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc23 C NE2 HIS 64 C HIS 61 1_555 M CU CU . C CU 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc24 C NE2 HIS 73 C HIS 70 1_555 M CU CU . C CU 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc25 C NE2 HIS 184 C HIS 181 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc26 C NE2 HIS 188 C HIS 185 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc27 C NE2 HIS 215 C HIS 212 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc28 M CU CU . C CU 5007 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LNL _atom_sites.fract_transf_matrix[1][1] 0.00948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 600 600 NAG NAG . E 3 CU A 1 5001 5001 CU CU . F 3 CU A 1 5012 5012 CU CU . G 3 CU B 1 5503 5503 CU CU . H 3 CU B 1 5004 5004 CU CU . I 3 CU B 1 5015 5015 CU CU . J 3 CU B 1 5506 5506 CU CU . K 2 NAG C 1 650 650 NAG NAG . L 2 NAG C 1 651 651 NAG NAG . M 3 CU C 1 5007 5007 CU CU . N 3 CU C 1 5018 5018 CU CU . O 3 CU C 1 5509 5509 CU CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 102.556 _atom_site.Cartn_y 53.581 _atom_site.Cartn_z 233.42 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 5503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #