data_1LNL # _model_server_result.job_id zF1vs1ZMkuXRmrJbFf3q-Q _model_server_result.datetime_utc '2024-12-02 06:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1LNL # _exptl.entry_id 1LNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LNL _cell.length_a 105.486 _cell.length_b 105.486 _cell.length_c 374.988 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 105.486 105.486 562.482 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 47 1_555 A SG CYS 61 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 174 A CYS 171 1_555 A SG CYS 241 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? disulf ? disulf3 A SG CYS 331 A CYS 328 1_555 A SG CYS 337 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 50 B CYS 47 1_555 B SG CYS 61 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? disulf ? disulf5 B SG CYS 174 B CYS 171 1_555 B SG CYS 241 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf6 B SG CYS 331 B CYS 328 1_555 B SG CYS 337 B CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 C SG CYS 50 C CYS 47 1_555 C SG CYS 61 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf8 C SG CYS 174 C CYS 171 1_555 C SG CYS 241 C CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? disulf ? disulf9 C SG CYS 331 C CYS 328 1_555 C SG CYS 337 C CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A ND1 HIS 2 A HIS -2 1_555 G CU CU . B CU 5503 6_456 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc2 A NE2 HIS 44 A HIS 41 1_555 E CU CU . A CU 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc3 A NE2 HIS 73 A HIS 70 1_555 E CU CU . A CU 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 A NE2 HIS 184 A HIS 181 1_555 F CU CU . A CU 5012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc5 A NE2 HIS 188 A HIS 185 1_555 F CU CU . A CU 5012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 A NE2 HIS 215 A HIS 212 1_555 F CU CU . A CU 5012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 B NE2 HIS 2 B HIS -2 1_555 J CU CU . B CU 5506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc8 B NE ARG 3 B ARG -1 1_555 J CU CU . B CU 5506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 B NH2 ARG 3 B ARG -1 1_555 J CU CU . B CU 5506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc10 B NE2 HIS 44 B HIS 41 1_555 H CU CU . B CU 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc11 B NE2 HIS 64 B HIS 61 1_555 H CU CU . B CU 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 B NE2 HIS 73 B HIS 70 1_555 H CU CU . B CU 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc13 B NE2 HIS 120 B HIS 117 1_555 G CU CU . B CU 5503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 B NE2 HIS 188 B HIS 185 1_555 I CU CU . B CU 5015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc15 B NE2 HIS 215 B HIS 212 1_555 I CU CU . B CU 5015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc16 B NE2 HIS 280 B HIS 277 1_555 O CU CU . C CU 5509 8_676 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc17 H CU CU . B CU 5004 1_555 I CU CU . B CU 5015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc18 J CU CU . B CU 5506 8_766 C NE2 HIS 280 C HIS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc19 C ND1 HIS 2 C HIS -2 1_555 O CU CU . C CU 5509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc20 C NE ARG 3 C ARG -1 1_555 O CU CU . C CU 5509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc21 C NH2 ARG 3 C ARG -1 1_555 O CU CU . C CU 5509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc22 C NE2 HIS 44 C HIS 41 1_555 M CU CU . C CU 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc23 C NE2 HIS 64 C HIS 61 1_555 M CU CU . C CU 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc24 C NE2 HIS 73 C HIS 70 1_555 M CU CU . C CU 5007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc25 C NE2 HIS 184 C HIS 181 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc26 C NE2 HIS 188 C HIS 185 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc27 C NE2 HIS 215 C HIS 212 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc28 M CU CU . C CU 5007 1_555 N CU CU . C CU 5018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1LNL _atom_sites.fract_transf_matrix[1][1] 0.00948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 600 600 NAG NAG . E 3 CU A 1 5001 5001 CU CU . F 3 CU A 1 5012 5012 CU CU . G 3 CU B 1 5503 5503 CU CU . H 3 CU B 1 5004 5004 CU CU . I 3 CU B 1 5015 5015 CU CU . J 3 CU B 1 5506 5506 CU CU . K 2 NAG C 1 650 650 NAG NAG . L 2 NAG C 1 651 651 NAG NAG . M 3 CU C 1 5007 5007 CU CU . N 3 CU C 1 5018 5018 CU CU . O 3 CU C 1 5509 5509 CU CU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 64.681 -11.614 217.959 1 77.87 ? C1 NAG 600 A 1 HETATM 2 C C2 NAG . . . D 2 64.436 -12.032 216.482 1 77.87 ? C2 NAG 600 A 1 HETATM 3 C C3 NAG . . . D 2 64.379 -13.6 216.204 1 77.87 ? C3 NAG 600 A 1 HETATM 4 C C4 NAG . . . D 2 65.406 -14.408 217.057 1 77.87 ? C4 NAG 600 A 1 HETATM 5 C C5 NAG . . . D 2 65.453 -13.889 218.519 1 77.87 ? C5 NAG 600 A 1 HETATM 6 C C6 NAG . . . D 2 66.485 -14.724 219.355 1 77.87 ? C6 NAG 600 A 1 HETATM 7 C C7 NAG . . . D 2 63.182 -10.774 214.83 1 77.87 ? C7 NAG 600 A 1 HETATM 8 C C8 NAG . . . D 2 62.538 -11.559 213.662 1 77.87 ? C8 NAG 600 A 1 HETATM 9 N N2 NAG . . . D 2 63.212 -11.328 216.076 1 77.87 ? N2 NAG 600 A 1 HETATM 10 O O1 NAG . . . D 2 65.025 -10.202 217.921 1 77.87 ? O1 NAG 600 A 1 HETATM 11 O O3 NAG . . . D 2 64.431 -13.998 214.806 1 77.87 ? O3 NAG 600 A 1 HETATM 12 O O4 NAG . . . D 2 65.102 -15.808 217.109 1 77.87 ? O4 NAG 600 A 1 HETATM 13 O O5 NAG . . . D 2 65.707 -12.445 218.567 1 77.87 ? O5 NAG 600 A 1 HETATM 14 O O6 NAG . . . D 2 66.244 -16.125 219.336 1 77.87 ? O6 NAG 600 A 1 HETATM 15 O O7 NAG . . . D 2 63.68 -9.626 214.634 1 77.87 ? O7 NAG 600 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #