data_1LNM # _model_server_result.job_id LwuvbCVbAdYeytT9t-ykCw _model_server_result.datetime_utc '2024-11-26 14:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 1LNM # _exptl.entry_id 1LNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIGITOXIGENIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.87 _cell.angle_gamma 90 _cell.entry_id 1LNM _cell.length_a 75.129 _cell.length_b 63.874 _cell.length_c 39.329 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 42 A CYS 42 1_555 A SG CYS 170 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C23 H34 O4' _chem_comp.formula_weight 374.514 _chem_comp.id DTX _chem_comp.mon_nstd_flag . _chem_comp.name DIGITOXIGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(3,14-DIHYDROXY-10,13-DIMETHYL-HEXADECAHYDRO-CYCLOPENTA[A]PHENANTHREN-17-YL)-5H-FURAN-2-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C23 DTX doub 83 n n C23 C22 DTX sing 84 n n C23 O21 DTX sing 85 n n C22 C20 DTX doub 86 n n C22 H22 DTX sing 87 n n O21 C21 DTX sing 88 n n C21 C20 DTX sing 89 n n C21 H211 DTX sing 90 n n C21 H212 DTX sing 91 n n C20 C17 DTX sing 92 n n C17 C16 DTX sing 93 n n C17 C13 DTX sing 94 n n C17 H17 DTX sing 95 n n C16 C15 DTX sing 96 n n C16 H161 DTX sing 97 n n C16 H162 DTX sing 98 n n C13 C12 DTX sing 99 n n C13 C18 DTX sing 100 n n C13 C14 DTX sing 101 n n C12 C11 DTX sing 102 n n C12 H121 DTX sing 103 n n C12 H122 DTX sing 104 n n C11 C9 DTX sing 105 n n C11 H111 DTX sing 106 n n C11 H112 DTX sing 107 n n C18 H181 DTX sing 108 n n C18 H182 DTX sing 109 n n C18 H183 DTX sing 110 n n C14 C15 DTX sing 111 n n C14 O14 DTX sing 112 n n C14 C8 DTX sing 113 n n C15 H151 DTX sing 114 n n C15 H152 DTX sing 115 n n O14 H14O DTX sing 116 n n C8 C7 DTX sing 117 n n C8 C9 DTX sing 118 n n C8 HC8 DTX sing 119 n n C7 C6 DTX sing 120 n n C7 HC71 DTX sing 121 n n C7 HC72 DTX sing 122 n n C9 C10 DTX sing 123 n n C9 HC9 DTX sing 124 n n C10 C1 DTX sing 125 n n C10 C19 DTX sing 126 n n C10 C5 DTX sing 127 n n C1 C2 DTX sing 128 n n C1 HC11 DTX sing 129 n n C1 HC12 DTX sing 130 n n C19 H191 DTX sing 131 n n C19 H192 DTX sing 132 n n C19 H193 DTX sing 133 n n C5 C6 DTX sing 134 n n C5 C4 DTX sing 135 n n C5 HC5 DTX sing 136 n n C6 HC61 DTX sing 137 n n C6 HC62 DTX sing 138 n n C4 C3 DTX sing 139 n n C4 HC41 DTX sing 140 n n C4 HC42 DTX sing 141 n n C3 C2 DTX sing 142 n n C3 O32 DTX sing 143 n n C3 HC3 DTX sing 144 n n C2 HC21 DTX sing 145 n n C2 HC22 DTX sing 146 n n O32 H32O DTX sing 147 n n # _atom_sites.entry_id 1LNM _atom_sites.fract_transf_matrix[1][1] 0.01331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTX A 1 700 700 DTX DGT . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 9 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 12 HOH HOH . C 3 HOH A 13 713 13 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 16 HOH HOH . C 3 HOH A 17 717 17 HOH HOH . C 3 HOH A 18 718 18 HOH HOH . C 3 HOH A 19 719 19 HOH HOH . C 3 HOH A 20 720 20 HOH HOH . C 3 HOH A 21 721 21 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 23 HOH HOH . C 3 HOH A 24 724 24 HOH HOH . C 3 HOH A 25 725 25 HOH HOH . C 3 HOH A 26 726 26 HOH HOH . C 3 HOH A 27 727 27 HOH HOH . C 3 HOH A 28 728 28 HOH HOH . C 3 HOH A 29 729 29 HOH HOH . C 3 HOH A 30 730 30 HOH HOH . C 3 HOH A 31 731 31 HOH HOH . C 3 HOH A 32 732 32 HOH HOH . C 3 HOH A 33 733 33 HOH HOH . C 3 HOH A 34 734 34 HOH HOH . C 3 HOH A 35 735 35 HOH HOH . C 3 HOH A 36 736 36 HOH HOH . C 3 HOH A 37 737 37 HOH HOH . C 3 HOH A 38 738 38 HOH HOH . C 3 HOH A 39 739 39 HOH HOH . C 3 HOH A 40 740 40 HOH HOH . C 3 HOH A 41 741 41 HOH HOH . C 3 HOH A 42 742 42 HOH HOH . C 3 HOH A 43 743 43 HOH HOH . C 3 HOH A 44 744 44 HOH HOH . C 3 HOH A 45 745 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 DTX . . . B 2 14.781 -21.292 37.106 1 39.54 ? O23 DTX 700 A 1 HETATM 2 C C23 DTX . . . B 2 14.04 -22.208 37.035 1 35.59 ? C23 DTX 700 A 1 HETATM 3 C C22 DTX . . . B 2 12.904 -22.525 36.164 1 27.9 ? C22 DTX 700 A 1 HETATM 4 O O21 DTX . . . B 2 14.23 -23.261 37.923 1 28.59 ? O21 DTX 700 A 1 HETATM 5 C C21 DTX . . . B 2 13.224 -24.265 37.662 1 33.19 ? C21 DTX 700 A 1 HETATM 6 C C20 DTX . . . B 2 12.42 -23.74 36.532 1 21.29 ? C20 DTX 700 A 1 HETATM 7 C C17 DTX . . . B 2 11.203 -24.507 36.116 1 18.52 ? C17 DTX 700 A 1 HETATM 8 C C16 DTX . . . B 2 11.556 -26.043 36.112 1 15.4 ? C16 DTX 700 A 1 HETATM 9 C C13 DTX . . . B 2 9.967 -24.317 36.994 1 17.39 ? C13 DTX 700 A 1 HETATM 10 C C12 DTX . . . B 2 8.737 -24.155 36.051 1 23.03 ? C12 DTX 700 A 1 HETATM 11 C C11 DTX . . . B 2 7.376 -24.351 36.706 1 16.41 ? C11 DTX 700 A 1 HETATM 12 C C18 DTX . . . B 2 10.07 -23.118 37.931 1 19.82 ? C18 DTX 700 A 1 HETATM 13 C C14 DTX . . . B 2 9.79 -25.726 37.682 1 19.86 ? C14 DTX 700 A 1 HETATM 14 C C15 DTX . . . B 2 10.262 -26.683 36.612 1 16.07 ? C15 DTX 700 A 1 HETATM 15 O O14 DTX . . . B 2 10.826 -25.864 38.702 1 15.6 ? O14 DTX 700 A 1 HETATM 16 C C8 DTX . . . B 2 8.419 -25.959 38.361 1 17.52 ? C8 DTX 700 A 1 HETATM 17 C C7 DTX . . . B 2 8.393 -27.311 39.079 1 16.47 ? C7 DTX 700 A 1 HETATM 18 C C9 DTX . . . B 2 7.222 -25.746 37.373 1 15.98 ? C9 DTX 700 A 1 HETATM 19 C C10 DTX . . . B 2 5.866 -25.976 38.106 1 14.46 ? C10 DTX 700 A 1 HETATM 20 C C1 DTX . . . B 2 4.706 -25.856 37.078 1 22.86 ? C1 DTX 700 A 1 HETATM 21 C C19 DTX . . . B 2 5.512 -24.881 39.166 1 14.83 ? C19 DTX 700 A 1 HETATM 22 C C5 DTX . . . B 2 5.864 -27.386 38.657 1 23.27 ? C5 DTX 700 A 1 HETATM 23 C C6 DTX . . . B 2 7.004 -27.671 39.646 1 16.96 ? C6 DTX 700 A 1 HETATM 24 C C4 DTX . . . B 2 5.935 -28.426 37.528 1 21.56 ? C4 DTX 700 A 1 HETATM 25 C C3 DTX . . . B 2 4.835 -28.258 36.495 1 35.18 ? C3 DTX 700 A 1 HETATM 26 C C2 DTX . . . B 2 4.86 -26.85 35.934 1 32.78 ? C2 DTX 700 A 1 HETATM 27 O O32 DTX . . . B 2 3.555 -28.483 37.158 1 27.79 ? O32 DTX 700 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #