data_1LOL
#
_model_server_result.job_id            35QP7l_xYIGlmMCI3r3dBA 
_model_server_result.datetime_utc      '2024-11-26 23:58:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lol 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2001}' 
#
_entry.id    1LOL 
#
_exptl.entry_id    1LOL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              365.213 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "XANTHOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.28 
_cell.angle_gamma         90 
_cell.entry_id            1LOL 
_cell.length_a            57.57 
_cell.length_b            55.482 
_cell.length_c            66.129 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LOL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H14 N4 O9 P 1' 
_chem_comp.formula_weight    365.213 
_chem_comp.id                XMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "XANTHOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P XMP sing 363 n n 
P O2P XMP sing 364 n n 
P O5' XMP sing 365 n n 
P O3P XMP doub 366 n n 
O1P HOP1 XMP sing 367 n n 
O2P HOP2 XMP sing 368 n n 
O5' C5' XMP sing 369 n n 
C5' C4' XMP sing 370 n n 
C5' "H5'2" XMP sing 371 n n 
C5' "H5'1" XMP sing 372 n n 
C4' O4' XMP sing 373 n n 
C4' C3' XMP sing 374 n n 
C4' H4' XMP sing 375 n n 
O4' C1' XMP sing 376 n n 
C1' N9 XMP sing 377 n n 
C1' C2' XMP sing 378 n n 
C1' H1' XMP sing 379 n n 
N9 C4 XMP sing 380 n y 
N9 C8 XMP sing 381 n y 
C4 N3 XMP sing 382 n n 
C4 C5 XMP doub 383 n y 
N3 C2 XMP sing 384 n n 
N3 H3 XMP sing 385 n n 
N1 C2 XMP sing 386 n n 
N1 C6 XMP sing 387 n n 
N1 H1 XMP sing 388 n n 
C2 O2 XMP doub 389 n n 
C6 O6 XMP doub 390 n n 
C6 C5 XMP sing 391 n n 
C5 N7 XMP sing 392 n y 
N7 C8 XMP doub 393 n y 
N7 H7 XMP sing 394 n n 
C8 H8 XMP sing 395 n n 
C2' O2' XMP sing 396 n n 
C2' C3' XMP sing 397 n n 
C2' H2' XMP sing 398 n n 
O2' H2O1 XMP sing 399 n n 
C3' O3' XMP sing 400 n n 
C3' H3' XMP sing 401 n n 
O3' H3O1 XMP sing 402 n n 
#
_atom_sites.entry_id                     1LOL 
_atom_sites.fract_transf_matrix[1][1]    0.01737 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001301 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018024 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BU2 A 1 5001 5001 BU2 DIO . 
D 3 XMP A 1 2001 2001 XMP XMP . 
E 2 BU2 B 1 5002 5002 BU2 DIO . 
F 3 XMP B 1 2002 2002 XMP XMP . 
G 4 HOH A 1 3005 3005 HOH TIP . 
G 4 HOH A 2 3007 3007 HOH TIP . 
G 4 HOH A 3 3008 3008 HOH TIP . 
G 4 HOH A 4 3009 3009 HOH TIP . 
G 4 HOH A 5 3011 3011 HOH TIP . 
G 4 HOH A 6 3012 3012 HOH TIP . 
G 4 HOH A 7 3013 3013 HOH TIP . 
G 4 HOH A 8 3015 3015 HOH TIP . 
G 4 HOH A 9 3017 3017 HOH TIP . 
G 4 HOH A 10 3019 3019 HOH TIP . 
G 4 HOH A 11 3021 3021 HOH TIP . 
G 4 HOH A 12 3022 3022 HOH TIP . 
G 4 HOH A 13 3023 3023 HOH TIP . 
G 4 HOH A 14 3024 3024 HOH TIP . 
G 4 HOH A 15 3028 3028 HOH TIP . 
G 4 HOH A 16 3030 3030 HOH TIP . 
G 4 HOH A 17 3031 3031 HOH TIP . 
G 4 HOH A 18 3033 3033 HOH TIP . 
G 4 HOH A 19 3034 3034 HOH TIP . 
G 4 HOH A 20 3038 3038 HOH TIP . 
G 4 HOH A 21 3039 3039 HOH TIP . 
G 4 HOH A 22 3040 3040 HOH TIP . 
G 4 HOH A 23 3042 3042 HOH TIP . 
G 4 HOH A 24 3044 3044 HOH TIP . 
G 4 HOH A 25 3045 3045 HOH TIP . 
G 4 HOH A 26 3046 3046 HOH TIP . 
G 4 HOH A 27 3048 3048 HOH TIP . 
G 4 HOH A 28 3050 3050 HOH TIP . 
G 4 HOH A 29 3051 3051 HOH TIP . 
G 4 HOH A 30 3057 3057 HOH TIP . 
G 4 HOH A 31 3058 3058 HOH TIP . 
G 4 HOH A 32 3060 3060 HOH TIP . 
G 4 HOH A 33 3061 3061 HOH TIP . 
G 4 HOH A 34 3062 3062 HOH TIP . 
G 4 HOH A 35 3063 3063 HOH TIP . 
G 4 HOH A 36 3065 3065 HOH TIP . 
G 4 HOH A 37 3067 3067 HOH TIP . 
G 4 HOH A 38 3069 3069 HOH TIP . 
G 4 HOH A 39 3072 3072 HOH TIP . 
G 4 HOH A 40 3073 3073 HOH TIP . 
G 4 HOH A 41 3074 3074 HOH TIP . 
G 4 HOH A 42 3075 3075 HOH TIP . 
G 4 HOH A 43 3077 3077 HOH TIP . 
G 4 HOH A 44 3079 3079 HOH TIP . 
G 4 HOH A 45 3080 3080 HOH TIP . 
G 4 HOH A 46 3081 3081 HOH TIP . 
G 4 HOH A 47 3082 3082 HOH TIP . 
G 4 HOH A 48 3084 3084 HOH TIP . 
G 4 HOH A 49 3085 3085 HOH TIP . 
G 4 HOH A 50 3086 3086 HOH TIP . 
G 4 HOH A 51 3087 3087 HOH TIP . 
G 4 HOH A 52 3088 3088 HOH TIP . 
G 4 HOH A 53 3089 3089 HOH TIP . 
G 4 HOH A 54 3090 3090 HOH TIP . 
G 4 HOH A 55 3091 3091 HOH TIP . 
G 4 HOH A 56 3093 3093 HOH TIP . 
G 4 HOH A 57 3094 3094 HOH TIP . 
G 4 HOH A 58 3095 3095 HOH TIP . 
G 4 HOH A 59 3096 3096 HOH TIP . 
G 4 HOH A 60 3098 3098 HOH TIP . 
G 4 HOH A 61 3099 3099 HOH TIP . 
G 4 HOH A 62 3100 3100 HOH TIP . 
G 4 HOH A 63 3101 3101 HOH TIP . 
G 4 HOH A 64 3103 3103 HOH TIP . 
G 4 HOH A 65 3106 3106 HOH TIP . 
G 4 HOH A 66 3109 3109 HOH TIP . 
G 4 HOH A 67 3110 3110 HOH TIP . 
G 4 HOH A 68 3114 3114 HOH TIP . 
G 4 HOH A 69 3115 3115 HOH TIP . 
G 4 HOH A 70 3116 3116 HOH TIP . 
G 4 HOH A 71 3117 3117 HOH TIP . 
G 4 HOH A 72 3119 3119 HOH TIP . 
G 4 HOH A 73 3120 3120 HOH TIP . 
G 4 HOH A 74 3121 3121 HOH TIP . 
G 4 HOH A 75 3123 3123 HOH TIP . 
G 4 HOH A 76 3125 3125 HOH TIP . 
G 4 HOH A 77 3126 3126 HOH TIP . 
G 4 HOH A 78 3129 3129 HOH TIP . 
G 4 HOH A 79 3130 3130 HOH TIP . 
G 4 HOH A 80 3131 3131 HOH TIP . 
G 4 HOH A 81 3135 3135 HOH TIP . 
G 4 HOH A 82 3138 3138 HOH TIP . 
G 4 HOH A 83 3141 3141 HOH TIP . 
G 4 HOH A 84 3144 3144 HOH TIP . 
G 4 HOH A 85 3152 3152 HOH TIP . 
G 4 HOH A 86 3157 3157 HOH TIP . 
G 4 HOH A 87 3163 3163 HOH TIP . 
G 4 HOH A 88 3164 3164 HOH TIP . 
G 4 HOH A 89 3166 3166 HOH TIP . 
G 4 HOH A 90 3170 3170 HOH TIP . 
G 4 HOH A 91 3172 3172 HOH TIP . 
G 4 HOH A 92 3173 3173 HOH TIP . 
G 4 HOH A 93 3174 3174 HOH TIP . 
G 4 HOH A 94 3178 3178 HOH TIP . 
G 4 HOH A 95 3179 3179 HOH TIP . 
G 4 HOH A 96 3181 3181 HOH TIP . 
H 4 HOH B 1 3001 3001 HOH TIP . 
H 4 HOH B 2 3002 3002 HOH TIP . 
H 4 HOH B 3 3003 3003 HOH TIP . 
H 4 HOH B 4 3004 3004 HOH TIP . 
H 4 HOH B 5 3006 3006 HOH TIP . 
H 4 HOH B 6 3010 3010 HOH TIP . 
H 4 HOH B 7 3014 3014 HOH TIP . 
H 4 HOH B 8 3016 3016 HOH TIP . 
H 4 HOH B 9 3018 3018 HOH TIP . 
H 4 HOH B 10 3020 3020 HOH TIP . 
H 4 HOH B 11 3025 3025 HOH TIP . 
H 4 HOH B 12 3026 3026 HOH TIP . 
H 4 HOH B 13 3027 3027 HOH TIP . 
H 4 HOH B 14 3029 3029 HOH TIP . 
H 4 HOH B 15 3032 3032 HOH TIP . 
H 4 HOH B 16 3035 3035 HOH TIP . 
H 4 HOH B 17 3036 3036 HOH TIP . 
H 4 HOH B 18 3037 3037 HOH TIP . 
H 4 HOH B 19 3041 3041 HOH TIP . 
H 4 HOH B 20 3043 3043 HOH TIP . 
H 4 HOH B 21 3047 3047 HOH TIP . 
H 4 HOH B 22 3049 3049 HOH TIP . 
H 4 HOH B 23 3052 3052 HOH TIP . 
H 4 HOH B 24 3053 3053 HOH TIP . 
H 4 HOH B 25 3054 3054 HOH TIP . 
H 4 HOH B 26 3055 3055 HOH TIP . 
H 4 HOH B 27 3056 3056 HOH TIP . 
H 4 HOH B 28 3059 3059 HOH TIP . 
H 4 HOH B 29 3064 3064 HOH TIP . 
H 4 HOH B 30 3066 3066 HOH TIP . 
H 4 HOH B 31 3068 3068 HOH TIP . 
H 4 HOH B 32 3070 3070 HOH TIP . 
H 4 HOH B 33 3071 3071 HOH TIP . 
H 4 HOH B 34 3076 3076 HOH TIP . 
H 4 HOH B 35 3078 3078 HOH TIP . 
H 4 HOH B 36 3083 3083 HOH TIP . 
H 4 HOH B 37 3092 3092 HOH TIP . 
H 4 HOH B 38 3097 3097 HOH TIP . 
H 4 HOH B 39 3102 3102 HOH TIP . 
H 4 HOH B 40 3104 3104 HOH TIP . 
H 4 HOH B 41 3105 3105 HOH TIP . 
H 4 HOH B 42 3107 3107 HOH TIP . 
H 4 HOH B 43 3108 3108 HOH TIP . 
H 4 HOH B 44 3111 3111 HOH TIP . 
H 4 HOH B 45 3112 3112 HOH TIP . 
H 4 HOH B 46 3113 3113 HOH TIP . 
H 4 HOH B 47 3118 3118 HOH TIP . 
H 4 HOH B 48 3122 3122 HOH TIP . 
H 4 HOH B 49 3124 3124 HOH TIP . 
H 4 HOH B 50 3127 3127 HOH TIP . 
H 4 HOH B 51 3128 3128 HOH TIP . 
H 4 HOH B 52 3132 3132 HOH TIP . 
H 4 HOH B 53 3133 3133 HOH TIP . 
H 4 HOH B 54 3134 3134 HOH TIP . 
H 4 HOH B 55 3136 3136 HOH TIP . 
H 4 HOH B 56 3137 3137 HOH TIP . 
H 4 HOH B 57 3139 3139 HOH TIP . 
H 4 HOH B 58 3140 3140 HOH TIP . 
H 4 HOH B 59 3142 3142 HOH TIP . 
H 4 HOH B 60 3143 3143 HOH TIP . 
H 4 HOH B 61 3146 3146 HOH TIP . 
H 4 HOH B 62 3147 3147 HOH TIP . 
H 4 HOH B 63 3148 3148 HOH TIP . 
H 4 HOH B 64 3149 3149 HOH TIP . 
H 4 HOH B 65 3150 3150 HOH TIP . 
H 4 HOH B 66 3151 3151 HOH TIP . 
H 4 HOH B 67 3153 3153 HOH TIP . 
H 4 HOH B 68 3154 3154 HOH TIP . 
H 4 HOH B 69 3155 3155 HOH TIP . 
H 4 HOH B 70 3156 3156 HOH TIP . 
H 4 HOH B 71 3158 3158 HOH TIP . 
H 4 HOH B 72 3159 3159 HOH TIP . 
H 4 HOH B 73 3160 3160 HOH TIP . 
H 4 HOH B 74 3161 3161 HOH TIP . 
H 4 HOH B 75 3162 3162 HOH TIP . 
H 4 HOH B 76 3165 3165 HOH TIP . 
H 4 HOH B 77 3167 3167 HOH TIP . 
H 4 HOH B 78 3168 3168 HOH TIP . 
H 4 HOH B 79 3169 3169 HOH TIP . 
H 4 HOH B 80 3171 3171 HOH TIP . 
H 4 HOH B 81 3175 3175 HOH TIP . 
H 4 HOH B 82 3176 3176 HOH TIP . 
H 4 HOH B 83 3177 3177 HOH TIP . 
H 4 HOH B 84 3180 3180 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P XMP . . . D 3 3.293 36.948 44.605 1 20.47 ? P XMP 2001 A 1 
HETATM 2 O O1P XMP . . . D 3 4.121 37.49 43.525 1 20.7 ? O1P XMP 2001 A 1 
HETATM 3 O O2P XMP . . . D 3 2.086 36.228 44.064 1 19.26 ? O2P XMP 2001 A 1 
HETATM 4 O O5' XMP . . . D 3 2.711 38.138 45.513 1 20.71 ? O5' XMP 2001 A 1 
HETATM 5 O O3P XMP . . . D 3 4.11 36.055 45.571 1 19.12 ? O3P XMP 2001 A 1 
HETATM 6 C C5' XMP . . . D 3 2.58 38.043 46.935 1 16.09 ? C5' XMP 2001 A 1 
HETATM 7 C C4' XMP . . . D 3 1.975 39.312 47.477 1 17.05 ? C4' XMP 2001 A 1 
HETATM 8 O O4' XMP . . . D 3 2.965 40.348 47.169 1 17.13 ? O4' XMP 2001 A 1 
HETATM 9 C C1' XMP . . . D 3 2.283 41.581 46.876 1 17.99 ? C1' XMP 2001 A 1 
HETATM 10 N N9 XMP . . . D 3 2.809 42.062 45.577 1 19.78 ? N9 XMP 2001 A 1 
HETATM 11 C C4 XMP . . . D 3 3.531 43.228 45.431 1 19.26 ? C4 XMP 2001 A 1 
HETATM 12 N N3 XMP . . . D 3 3.877 44.12 46.432 1 21.99 ? N3 XMP 2001 A 1 
HETATM 13 N N1 XMP . . . D 3 4.945 45.331 44.604 1 22.03 ? N1 XMP 2001 A 1 
HETATM 14 C C2 XMP . . . D 3 4.598 45.171 45.95 1 24.19 ? C2 XMP 2001 A 1 
HETATM 15 O O2 XMP . . . D 3 5.002 46.067 46.686 1 24.18 ? O2 XMP 2001 A 1 
HETATM 16 C C6 XMP . . . D 3 4.58 44.402 43.577 1 22.34 ? C6 XMP 2001 A 1 
HETATM 17 O O6 XMP . . . D 3 4.912 44.596 42.414 1 25.75 ? O6 XMP 2001 A 1 
HETATM 18 C C5 XMP . . . D 3 3.829 43.305 44.086 1 21.01 ? C5 XMP 2001 A 1 
HETATM 19 N N7 XMP . . . D 3 3.301 42.199 43.369 1 23.28 ? N7 XMP 2001 A 1 
HETATM 20 C C8 XMP . . . D 3 2.716 41.512 44.318 1 20.88 ? C8 XMP 2001 A 1 
HETATM 21 C C2' XMP . . . D 3 0.786 41.319 46.967 1 17.24 ? C2' XMP 2001 A 1 
HETATM 22 O O2' XMP . . . D 3 0.241 41.755 48.219 1 17.8 ? O2' XMP 2001 A 1 
HETATM 23 C C3' XMP . . . D 3 0.695 39.828 46.826 1 14.21 ? C3' XMP 2001 A 1 
HETATM 24 O O3' XMP . . . D 3 -0.478 39.334 47.451 1 20.65 ? O3' XMP 2001 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           840 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           24 
#