data_1LOO # _model_server_result.job_id iOW1XKuncmOtnHENBf4xdw _model_server_result.datetime_utc '2024-11-18 03:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1loo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":458}' # _entry.id 1LOO # _exptl.entry_id 1LOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LOO _cell.length_a 69.935 _cell.length_b 69.935 _cell.length_c 198.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 139.87 139.87 99.045 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1LOO _atom_sites.fract_transf_matrix[1][1] 0.014299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 458 452 GTP GTP . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 511 HOH HOH . C 3 HOH A 12 512 512 HOH HOH . C 3 HOH A 13 513 513 HOH HOH . C 3 HOH A 14 514 514 HOH HOH . C 3 HOH A 15 515 515 HOH HOH . C 3 HOH A 16 516 516 HOH HOH . C 3 HOH A 17 517 517 HOH HOH . C 3 HOH A 18 518 518 HOH HOH . C 3 HOH A 19 519 519 HOH HOH . C 3 HOH A 20 520 520 HOH HOH . C 3 HOH A 21 521 521 HOH HOH . C 3 HOH A 22 522 522 HOH HOH . C 3 HOH A 23 523 523 HOH HOH . C 3 HOH A 24 524 524 HOH HOH . C 3 HOH A 25 525 525 HOH HOH . C 3 HOH A 26 526 526 HOH HOH . C 3 HOH A 27 527 527 HOH HOH . C 3 HOH A 28 528 528 HOH HOH . C 3 HOH A 29 529 529 HOH HOH . C 3 HOH A 30 530 530 HOH HOH . C 3 HOH A 31 531 531 HOH HOH . C 3 HOH A 32 532 532 HOH HOH . C 3 HOH A 33 533 533 HOH HOH . C 3 HOH A 34 534 534 HOH HOH . C 3 HOH A 35 535 535 HOH HOH . C 3 HOH A 36 536 536 HOH HOH . C 3 HOH A 37 537 537 HOH HOH . C 3 HOH A 38 538 538 HOH HOH . C 3 HOH A 39 539 539 HOH HOH . C 3 HOH A 40 540 540 HOH HOH . C 3 HOH A 41 541 541 HOH HOH . C 3 HOH A 42 542 542 HOH HOH . C 3 HOH A 43 543 543 HOH HOH . C 3 HOH A 44 544 544 HOH HOH . C 3 HOH A 45 545 545 HOH HOH . C 3 HOH A 46 546 546 HOH HOH . C 3 HOH A 47 547 547 HOH HOH . C 3 HOH A 48 548 548 HOH HOH . C 3 HOH A 49 549 549 HOH HOH . C 3 HOH A 50 550 550 HOH HOH . C 3 HOH A 51 551 551 HOH HOH . C 3 HOH A 52 552 552 HOH HOH . C 3 HOH A 53 553 553 HOH HOH . C 3 HOH A 54 554 554 HOH HOH . C 3 HOH A 55 555 555 HOH HOH . C 3 HOH A 56 556 556 HOH HOH . C 3 HOH A 57 557 557 HOH HOH . C 3 HOH A 58 558 558 HOH HOH . C 3 HOH A 59 559 559 HOH HOH . C 3 HOH A 60 560 560 HOH HOH . C 3 HOH A 61 561 561 HOH HOH . C 3 HOH A 62 562 562 HOH HOH . C 3 HOH A 63 563 563 HOH HOH . C 3 HOH A 64 564 564 HOH HOH . C 3 HOH A 65 565 565 HOH HOH . C 3 HOH A 66 566 566 HOH HOH . C 3 HOH A 67 567 567 HOH HOH . C 3 HOH A 68 568 568 HOH HOH . C 3 HOH A 69 569 569 HOH HOH . C 3 HOH A 70 570 570 HOH HOH . C 3 HOH A 71 571 571 HOH HOH . C 3 HOH A 72 572 572 HOH HOH . C 3 HOH A 73 573 573 HOH HOH . C 3 HOH A 74 574 574 HOH HOH . C 3 HOH A 75 575 575 HOH HOH . C 3 HOH A 76 576 576 HOH HOH . C 3 HOH A 77 577 577 HOH HOH . C 3 HOH A 78 578 578 HOH HOH . C 3 HOH A 79 579 579 HOH HOH . C 3 HOH A 80 580 580 HOH HOH . C 3 HOH A 81 581 581 HOH HOH . C 3 HOH A 82 582 582 HOH HOH . C 3 HOH A 83 583 583 HOH HOH . C 3 HOH A 84 584 584 HOH HOH . C 3 HOH A 85 585 585 HOH HOH . C 3 HOH A 86 586 586 HOH HOH . C 3 HOH A 87 587 587 HOH HOH . C 3 HOH A 88 588 588 HOH HOH . C 3 HOH A 89 589 589 HOH HOH . C 3 HOH A 90 590 590 HOH HOH . C 3 HOH A 91 591 591 HOH HOH . C 3 HOH A 92 592 592 HOH HOH . C 3 HOH A 93 593 593 HOH HOH . C 3 HOH A 94 594 594 HOH HOH . C 3 HOH A 95 595 595 HOH HOH . C 3 HOH A 96 596 596 HOH HOH . C 3 HOH A 97 597 597 HOH HOH . C 3 HOH A 98 598 598 HOH HOH . C 3 HOH A 99 599 599 HOH HOH . C 3 HOH A 100 600 600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 60.681 56.014 37.217 0.5 44.46 ? PG GTP 458 A 1 HETATM 2 O O1G GTP . . . B 2 61.767 57.056 36.996 0.5 41.99 ? O1G GTP 458 A 1 HETATM 3 O O2G GTP . . . B 2 60.744 55.387 38.6 0.5 44.81 ? O2G GTP 458 A 1 HETATM 4 O O3G GTP . . . B 2 59.292 56.521 36.88 0.5 46.06 ? O3G GTP 458 A 1 HETATM 5 O O3B GTP . . . B 2 60.979 54.831 36.133 0.5 48.19 ? O3B GTP 458 A 1 HETATM 6 P PB GTP . . . B 2 61.407 53.299 36.491 1 47.76 ? PB GTP 458 A 1 HETATM 7 O O1B GTP . . . B 2 62.917 53.351 36.627 1 48.47 ? O1B GTP 458 A 1 HETATM 8 O O2B GTP . . . B 2 60.704 53.054 37.815 1 52.87 ? O2B GTP 458 A 1 HETATM 9 O O3A GTP . . . B 2 61.08 52.005 35.557 1 49.11 ? O3A GTP 458 A 1 HETATM 10 P PA GTP . . . B 2 60.157 50.713 35.946 1 50.52 ? PA GTP 458 A 1 HETATM 11 O O1A GTP . . . B 2 60.986 49.494 35.852 1 51.08 ? O1A GTP 458 A 1 HETATM 12 O O2A GTP . . . B 2 59.402 50.966 37.194 1 57.64 ? O2A GTP 458 A 1 HETATM 13 O O5' GTP . . . B 2 59.107 50.662 34.751 1 52 ? O5' GTP 458 A 1 HETATM 14 C C5' GTP . . . B 2 59.468 51.05 33.428 1 44.77 ? C5' GTP 458 A 1 HETATM 15 C C4' GTP . . . B 2 58.847 50.101 32.435 1 44.74 ? C4' GTP 458 A 1 HETATM 16 O O4' GTP . . . B 2 59.866 49.516 31.585 1 43.62 ? O4' GTP 458 A 1 HETATM 17 C C3' GTP . . . B 2 58.088 48.94 33.069 1 44.3 ? C3' GTP 458 A 1 HETATM 18 O O3' GTP . . . B 2 56.786 48.805 32.503 1 43.87 ? O3' GTP 458 A 1 HETATM 19 C C2' GTP . . . B 2 59.001 47.744 32.831 1 43.79 ? C2' GTP 458 A 1 HETATM 20 O O2' GTP . . . B 2 58.311 46.518 32.72 1 48.58 ? O2' GTP 458 A 1 HETATM 21 C C1' GTP . . . B 2 59.661 48.123 31.507 1 43.46 ? C1' GTP 458 A 1 HETATM 22 N N9 GTP . . . B 2 60.96 47.487 31.325 1 39.97 ? N9 GTP 458 A 1 HETATM 23 C C8 GTP . . . B 2 62.015 47.497 32.205 1 38.11 ? C8 GTP 458 A 1 HETATM 24 N N7 GTP . . . B 2 63.061 46.86 31.758 1 39.69 ? N7 GTP 458 A 1 HETATM 25 C C5 GTP . . . B 2 62.674 46.401 30.508 1 40.1 ? C5 GTP 458 A 1 HETATM 26 C C6 GTP . . . B 2 63.387 45.641 29.546 1 37.52 ? C6 GTP 458 A 1 HETATM 27 O O6 GTP . . . B 2 64.537 45.208 29.61 1 35.95 ? O6 GTP 458 A 1 HETATM 28 N N1 GTP . . . B 2 62.617 45.395 28.416 1 38.84 ? N1 GTP 458 A 1 HETATM 29 C C2 GTP . . . B 2 61.327 45.824 28.228 1 39.93 ? C2 GTP 458 A 1 HETATM 30 N N2 GTP . . . B 2 60.751 45.487 27.054 1 37.8 ? N2 GTP 458 A 1 HETATM 31 N N3 GTP . . . B 2 60.648 46.532 29.12 1 40.04 ? N3 GTP 458 A 1 HETATM 32 C C4 GTP . . . B 2 61.378 46.782 30.227 1 40.76 ? C4 GTP 458 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #