data_1LOQ # _model_server_result.job_id fCTl-vi7Z2LyneyAeZjawQ _model_server_result.datetime_utc '2024-11-23 07:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1loq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 1LOQ # _exptl.entry_id 1LOQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LOQ _cell.length_a 58.322 _cell.length_b 103.405 _cell.length_c 73.931 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LOQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 58.322 0 110.8965 3 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.405 73.931 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 64 A GLY 64 1_555 A N CSO 65 A CSO 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSO 65 A CSO 65 1_555 A N ARG 66 A ARG 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C9 H13 N2 O9 P' _chem_comp.formula_weight 324.181 _chem_comp.id U5P _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 U5P sing 344 n n N1 C6 U5P sing 345 n n N1 C1' U5P sing 346 n n C2 N3 U5P sing 347 n n C2 O2 U5P doub 348 n n N3 C4 U5P sing 349 n n N3 HN3 U5P sing 350 n n C4 C5 U5P sing 351 n n C4 O4 U5P doub 352 n n C5 C6 U5P doub 353 n n C5 H5 U5P sing 354 n n C6 H6 U5P sing 355 n n C1' C2' U5P sing 356 n n C1' O4' U5P sing 357 n n C1' H1' U5P sing 358 n n C2' O2' U5P sing 359 n n C2' C3' U5P sing 360 n n C2' H2' U5P sing 361 n n O2' HO2' U5P sing 362 n n C3' C4' U5P sing 363 n n C3' O3' U5P sing 364 n n C3' H3' U5P sing 365 n n C4' O4' U5P sing 366 n n C4' C5' U5P sing 367 n n C4' H4' U5P sing 368 n n O3' HO3' U5P sing 369 n n C5' O5' U5P sing 370 n n C5' "H5'1" U5P sing 371 n n C5' "H5'2" U5P sing 372 n n O5' P U5P sing 373 n n P O1P U5P doub 374 n n P O2P U5P sing 375 n n P O3P U5P sing 376 n n O2P HOP2 U5P sing 377 n n O3P HOP3 U5P sing 378 n n # _atom_sites.entry_id 1LOQ _atom_sites.fract_transf_matrix[1][1] 0.017146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U5P A 1 2001 2001 U5P UMP . C 3 HOH A 1 3001 3001 HOH TIP . C 3 HOH A 2 3002 3002 HOH TIP . C 3 HOH A 3 3003 3003 HOH TIP . C 3 HOH A 4 3004 3004 HOH TIP . C 3 HOH A 5 3005 3005 HOH TIP . C 3 HOH A 6 3006 3006 HOH TIP . C 3 HOH A 7 3007 3007 HOH TIP . C 3 HOH A 8 3008 3008 HOH TIP . C 3 HOH A 9 3009 3009 HOH TIP . C 3 HOH A 10 3010 3010 HOH TIP . C 3 HOH A 11 3011 3011 HOH TIP . C 3 HOH A 12 3012 3012 HOH TIP . C 3 HOH A 13 3013 3013 HOH TIP . C 3 HOH A 14 3014 3014 HOH TIP . C 3 HOH A 15 3015 3015 HOH TIP . C 3 HOH A 16 3016 3016 HOH TIP . C 3 HOH A 17 3017 3017 HOH TIP . C 3 HOH A 18 3018 3018 HOH TIP . C 3 HOH A 19 3019 3019 HOH TIP . C 3 HOH A 20 3020 3020 HOH TIP . C 3 HOH A 21 3021 3021 HOH TIP . C 3 HOH A 22 3022 3022 HOH TIP . C 3 HOH A 23 3023 3023 HOH TIP . C 3 HOH A 24 3024 3024 HOH TIP . C 3 HOH A 25 3025 3025 HOH TIP . C 3 HOH A 26 3026 3026 HOH TIP . C 3 HOH A 27 3027 3027 HOH TIP . C 3 HOH A 28 3028 3028 HOH TIP . C 3 HOH A 29 3029 3029 HOH TIP . C 3 HOH A 30 3030 3030 HOH TIP . C 3 HOH A 31 3031 3031 HOH TIP . C 3 HOH A 32 3032 3032 HOH TIP . C 3 HOH A 33 3033 3033 HOH TIP . C 3 HOH A 34 3034 3034 HOH TIP . C 3 HOH A 35 3035 3035 HOH TIP . C 3 HOH A 36 3036 3036 HOH TIP . C 3 HOH A 37 3037 3037 HOH TIP . C 3 HOH A 38 3038 3038 HOH TIP . C 3 HOH A 39 3039 3039 HOH TIP . C 3 HOH A 40 3040 3040 HOH TIP . C 3 HOH A 41 3041 3041 HOH TIP . C 3 HOH A 42 3042 3042 HOH TIP . C 3 HOH A 43 3043 3043 HOH TIP . C 3 HOH A 44 3044 3044 HOH TIP . C 3 HOH A 45 3045 3045 HOH TIP . C 3 HOH A 46 3046 3046 HOH TIP . C 3 HOH A 47 3047 3047 HOH TIP . C 3 HOH A 48 3048 3048 HOH TIP . C 3 HOH A 49 3049 3049 HOH TIP . C 3 HOH A 50 3050 3050 HOH TIP . C 3 HOH A 51 3051 3051 HOH TIP . C 3 HOH A 52 3052 3052 HOH TIP . C 3 HOH A 53 3053 3053 HOH TIP . C 3 HOH A 54 3054 3054 HOH TIP . C 3 HOH A 55 3055 3055 HOH TIP . C 3 HOH A 56 3056 3056 HOH TIP . C 3 HOH A 57 3057 3057 HOH TIP . C 3 HOH A 58 3058 3058 HOH TIP . C 3 HOH A 59 3059 3059 HOH TIP . C 3 HOH A 60 3060 3060 HOH TIP . C 3 HOH A 61 3061 3061 HOH TIP . C 3 HOH A 62 3062 3062 HOH TIP . C 3 HOH A 63 3063 3063 HOH TIP . C 3 HOH A 64 3064 3064 HOH TIP . C 3 HOH A 65 3065 3065 HOH TIP . C 3 HOH A 66 3066 3066 HOH TIP . C 3 HOH A 67 3067 3067 HOH TIP . C 3 HOH A 68 3068 3068 HOH TIP . C 3 HOH A 69 3069 3069 HOH TIP . C 3 HOH A 70 3070 3070 HOH TIP . C 3 HOH A 71 3071 3071 HOH TIP . C 3 HOH A 72 3072 3072 HOH TIP . C 3 HOH A 73 3073 3073 HOH TIP . C 3 HOH A 74 3074 3074 HOH TIP . C 3 HOH A 75 3075 3075 HOH TIP . C 3 HOH A 76 3076 3076 HOH TIP . C 3 HOH A 77 3077 3077 HOH TIP . C 3 HOH A 78 3078 3078 HOH TIP . C 3 HOH A 79 3079 3079 HOH TIP . C 3 HOH A 80 3080 3080 HOH TIP . C 3 HOH A 81 3081 3081 HOH TIP . C 3 HOH A 82 3082 3082 HOH TIP . C 3 HOH A 83 3083 3083 HOH TIP . C 3 HOH A 84 3084 3084 HOH TIP . C 3 HOH A 85 3085 3085 HOH TIP . C 3 HOH A 86 3086 3086 HOH TIP . C 3 HOH A 87 3087 3087 HOH TIP . C 3 HOH A 88 3088 3088 HOH TIP . C 3 HOH A 89 3089 3089 HOH TIP . C 3 HOH A 90 3090 3090 HOH TIP . C 3 HOH A 91 3091 3091 HOH TIP . C 3 HOH A 92 3092 3092 HOH TIP . C 3 HOH A 93 3093 3093 HOH TIP . C 3 HOH A 94 3094 3094 HOH TIP . C 3 HOH A 95 3095 3095 HOH TIP . C 3 HOH A 96 3096 3096 HOH TIP . C 3 HOH A 97 3097 3097 HOH TIP . C 3 HOH A 98 3098 3098 HOH TIP . C 3 HOH A 99 3099 3099 HOH TIP . C 3 HOH A 100 3100 3100 HOH TIP . C 3 HOH A 101 3101 3101 HOH TIP . C 3 HOH A 102 3102 3102 HOH TIP . C 3 HOH A 103 3103 3103 HOH TIP . C 3 HOH A 104 3104 3104 HOH TIP . C 3 HOH A 105 3105 3105 HOH TIP . C 3 HOH A 106 3106 3106 HOH TIP . C 3 HOH A 107 3107 3107 HOH TIP . C 3 HOH A 108 3108 3108 HOH TIP . C 3 HOH A 109 3109 3109 HOH TIP . C 3 HOH A 110 3110 3110 HOH TIP . C 3 HOH A 111 3111 3111 HOH TIP . C 3 HOH A 112 3112 3112 HOH TIP . C 3 HOH A 113 3113 3113 HOH TIP . C 3 HOH A 114 3114 3114 HOH TIP . C 3 HOH A 115 3115 3115 HOH TIP . C 3 HOH A 116 3116 3116 HOH TIP . C 3 HOH A 117 3117 3117 HOH TIP . C 3 HOH A 118 3118 3118 HOH TIP . C 3 HOH A 119 3119 3119 HOH TIP . C 3 HOH A 120 3120 3120 HOH TIP . C 3 HOH A 121 3121 3121 HOH TIP . C 3 HOH A 122 3122 3122 HOH TIP . C 3 HOH A 123 3123 3123 HOH TIP . C 3 HOH A 124 3124 3124 HOH TIP . C 3 HOH A 125 3125 3125 HOH TIP . C 3 HOH A 126 3126 3126 HOH TIP . C 3 HOH A 127 3127 3127 HOH TIP . C 3 HOH A 128 3128 3128 HOH TIP . C 3 HOH A 129 3129 3129 HOH TIP . C 3 HOH A 130 3130 3130 HOH TIP . C 3 HOH A 131 3131 3131 HOH TIP . C 3 HOH A 132 3132 3132 HOH TIP . C 3 HOH A 133 3133 3133 HOH TIP . C 3 HOH A 134 3134 3134 HOH TIP . C 3 HOH A 135 3135 3135 HOH TIP . C 3 HOH A 136 3136 3136 HOH TIP . C 3 HOH A 137 3137 3137 HOH TIP . C 3 HOH A 138 3138 3138 HOH TIP . C 3 HOH A 139 3139 3139 HOH TIP . C 3 HOH A 140 3140 3140 HOH TIP . C 3 HOH A 141 3141 3141 HOH TIP . C 3 HOH A 142 3142 3142 HOH TIP . C 3 HOH A 143 3143 3143 HOH TIP . C 3 HOH A 144 3144 3144 HOH TIP . C 3 HOH A 145 3145 3145 HOH TIP . C 3 HOH A 146 3146 3146 HOH TIP . C 3 HOH A 147 3147 3147 HOH TIP . C 3 HOH A 148 3148 3148 HOH TIP . C 3 HOH A 149 3149 3149 HOH TIP . C 3 HOH A 150 3150 3150 HOH TIP . C 3 HOH A 151 3151 3151 HOH TIP . C 3 HOH A 152 3152 3152 HOH TIP . C 3 HOH A 153 3153 3153 HOH TIP . C 3 HOH A 154 3154 3154 HOH TIP . C 3 HOH A 155 3155 3155 HOH TIP . C 3 HOH A 156 3156 3156 HOH TIP . C 3 HOH A 157 3157 3157 HOH TIP . C 3 HOH A 158 3158 3158 HOH TIP . C 3 HOH A 159 3159 3159 HOH TIP . C 3 HOH A 160 3160 3160 HOH TIP . C 3 HOH A 161 3161 3161 HOH TIP . C 3 HOH A 162 3162 3162 HOH TIP . C 3 HOH A 163 3163 3163 HOH TIP . C 3 HOH A 164 3164 3164 HOH TIP . C 3 HOH A 165 3165 3165 HOH TIP . C 3 HOH A 166 3166 3166 HOH TIP . C 3 HOH A 167 3167 3167 HOH TIP . C 3 HOH A 168 3168 3168 HOH TIP . C 3 HOH A 169 3169 3169 HOH TIP . C 3 HOH A 170 3170 3170 HOH TIP . C 3 HOH A 171 3171 3171 HOH TIP . C 3 HOH A 172 3172 3172 HOH TIP . C 3 HOH A 173 3173 3173 HOH TIP . C 3 HOH A 174 3174 3174 HOH TIP . C 3 HOH A 175 3175 3175 HOH TIP . C 3 HOH A 176 3176 3176 HOH TIP . C 3 HOH A 177 3177 3177 HOH TIP . C 3 HOH A 178 3178 3178 HOH TIP . C 3 HOH A 179 3179 3179 HOH TIP . C 3 HOH A 180 3180 3180 HOH TIP . C 3 HOH A 181 3181 3181 HOH TIP . C 3 HOH A 182 3182 3182 HOH TIP . C 3 HOH A 183 3183 3183 HOH TIP . C 3 HOH A 184 3184 3184 HOH TIP . C 3 HOH A 185 3185 3185 HOH TIP . C 3 HOH A 186 3186 3186 HOH TIP . C 3 HOH A 187 3187 3187 HOH TIP . C 3 HOH A 188 3188 3188 HOH TIP . C 3 HOH A 189 3189 3189 HOH TIP . C 3 HOH A 190 3190 3190 HOH TIP . C 3 HOH A 191 3191 3191 HOH TIP . C 3 HOH A 192 3192 3192 HOH TIP . C 3 HOH A 193 3193 3193 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 U5P . . . B 2 41.705 40.216 37.935 1 8.89 ? N1 U5P 2001 A 1 HETATM 2 C C2 U5P . . . B 2 42.639 39.497 37.192 1 10.19 ? C2 U5P 2001 A 1 HETATM 3 N N3 U5P . . . B 2 43.961 39.869 37.374 1 8.59 ? N3 U5P 2001 A 1 HETATM 4 C C4 U5P . . . B 2 44.44 40.878 38.214 1 9.77 ? C4 U5P 2001 A 1 HETATM 5 C C5 U5P . . . B 2 43.414 41.567 38.941 1 10.15 ? C5 U5P 2001 A 1 HETATM 6 C C6 U5P . . . B 2 42.128 41.237 38.791 1 10.78 ? C6 U5P 2001 A 1 HETATM 7 O O2 U5P . . . B 2 42.284 38.614 36.453 1 9.22 ? O2 U5P 2001 A 1 HETATM 8 O O4 U5P . . . B 2 45.638 41.064 38.254 1 9.79 ? O4 U5P 2001 A 1 HETATM 9 C C1' U5P . . . B 2 40.276 39.894 37.822 1 7.37 ? C1' U5P 2001 A 1 HETATM 10 C C2' U5P . . . B 2 39.602 40.015 36.475 1 6.59 ? C2' U5P 2001 A 1 HETATM 11 O O2' U5P . . . B 2 39.166 41.375 36.259 1 10.28 ? O2' U5P 2001 A 1 HETATM 12 C C3' U5P . . . B 2 38.476 38.977 36.546 1 6.82 ? C3' U5P 2001 A 1 HETATM 13 C C4' U5P . . . B 2 39.058 37.929 37.471 1 7.49 ? C4' U5P 2001 A 1 HETATM 14 O O3' U5P . . . B 2 37.305 39.57 37.097 1 8.78 ? O3' U5P 2001 A 1 HETATM 15 O O4' U5P . . . B 2 39.99 38.633 38.308 1 8 ? O4' U5P 2001 A 1 HETATM 16 C C5' U5P . . . B 2 39.746 36.724 36.878 1 11.94 ? C5' U5P 2001 A 1 HETATM 17 O O5' U5P . . . B 2 38.789 36.063 36.03 1 8.12 ? O5' U5P 2001 A 1 HETATM 18 P P U5P . . . B 2 39.118 34.704 35.257 1 8.38 ? P U5P 2001 A 1 HETATM 19 O O1P U5P . . . B 2 40.393 34.817 34.432 1 9.33 ? O1P U5P 2001 A 1 HETATM 20 O O2P U5P . . . B 2 37.95 34.472 34.379 1 7.82 ? O2P U5P 2001 A 1 HETATM 21 O O3P U5P . . . B 2 39.18 33.533 36.351 1 8.56 ? O3P U5P 2001 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #