data_1LOR # _model_server_result.job_id Zh0iypRkaNDUCGVA053MAw _model_server_result.datetime_utc '2024-10-17 03:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 1LOR # _exptl.entry_id 1LOR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-HYDROXYURIDINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LOR _cell.length_a 58.365 _cell.length_b 103.796 _cell.length_c 73.821 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.796 73.821 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 N2 O10 P' _chem_comp.formula_weight 340.181 _chem_comp.id BMP _chem_comp.mon_nstd_flag . _chem_comp.name "6-HYDROXYURIDINE-5'-PHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 BMP doub 70 n n P OP2 BMP sing 71 n n P OP3 BMP sing 72 n n P O5' BMP sing 73 n n OP2 HOP2 BMP sing 74 n n OP3 HOP3 BMP sing 75 n n O5' C5' BMP sing 76 n n C5' C4' BMP sing 77 n n C5' H5' BMP sing 78 n n C5' "H5''" BMP sing 79 n n C4' O4' BMP sing 80 n n C4' C3' BMP sing 81 n n C4' H4' BMP sing 82 n n O4' C1' BMP sing 83 n n C3' O3' BMP sing 84 n n C3' C2' BMP sing 85 n n C3' H3' BMP sing 86 n n O3' HO3' BMP sing 87 n n C2' O2' BMP sing 88 n n C2' C1' BMP sing 89 n n C2' H2' BMP sing 90 n n O2' HO2' BMP sing 91 n n C1' N1 BMP sing 92 n n C1' H1' BMP sing 93 n n N1 C2 BMP sing 94 n n N1 C6 BMP sing 95 n n C2 O2 BMP doub 96 n n C2 N3 BMP sing 97 n n N3 C4 BMP sing 98 n n N3 HN3 BMP sing 99 n n C4 O4 BMP doub 100 n n C4 C5 BMP sing 101 n n C5 C6 BMP doub 102 n n C5 H51 BMP sing 103 n n C6 O1 BMP sing 104 n n O1 HO1 BMP sing 105 n n # _atom_sites.entry_id 1LOR _atom_sites.fract_transf_matrix[1][1] 0.017134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BMP A 1 2001 2001 BMP BMP . C 3 HOH A 1 1001 1001 HOH TIP . C 3 HOH A 2 1002 1002 HOH TIP . C 3 HOH A 3 1003 1003 HOH TIP . C 3 HOH A 4 1004 1004 HOH TIP . C 3 HOH A 5 1005 1005 HOH TIP . C 3 HOH A 6 1006 1006 HOH TIP . C 3 HOH A 7 1007 1007 HOH TIP . C 3 HOH A 8 1008 1008 HOH TIP . C 3 HOH A 9 1009 1009 HOH TIP . C 3 HOH A 10 1010 1010 HOH TIP . C 3 HOH A 11 1011 1011 HOH TIP . C 3 HOH A 12 1012 1012 HOH TIP . C 3 HOH A 13 1013 1013 HOH TIP . C 3 HOH A 14 1014 1014 HOH TIP . C 3 HOH A 15 1015 1015 HOH TIP . C 3 HOH A 16 1016 1016 HOH TIP . C 3 HOH A 17 1017 1017 HOH TIP . C 3 HOH A 18 1018 1018 HOH TIP . C 3 HOH A 19 1019 1019 HOH TIP . C 3 HOH A 20 1020 1020 HOH TIP . C 3 HOH A 21 1021 1021 HOH TIP . C 3 HOH A 22 1022 1022 HOH TIP . C 3 HOH A 23 1023 1023 HOH TIP . C 3 HOH A 24 1024 1024 HOH TIP . C 3 HOH A 25 1025 1025 HOH TIP . C 3 HOH A 26 1026 1026 HOH TIP . C 3 HOH A 27 1027 1027 HOH TIP . C 3 HOH A 28 1028 1028 HOH TIP . C 3 HOH A 29 1029 1029 HOH TIP . C 3 HOH A 30 1030 1030 HOH TIP . C 3 HOH A 31 1031 1031 HOH TIP . C 3 HOH A 32 1032 1032 HOH TIP . C 3 HOH A 33 1033 1033 HOH TIP . C 3 HOH A 34 1034 1034 HOH TIP . C 3 HOH A 35 1035 1035 HOH TIP . C 3 HOH A 36 1036 1036 HOH TIP . C 3 HOH A 37 1037 1037 HOH TIP . C 3 HOH A 38 1038 1038 HOH TIP . C 3 HOH A 39 1039 1039 HOH TIP . C 3 HOH A 40 1040 1040 HOH TIP . C 3 HOH A 41 1041 1041 HOH TIP . C 3 HOH A 42 1042 1042 HOH TIP . C 3 HOH A 43 1043 1043 HOH TIP . C 3 HOH A 44 1044 1044 HOH TIP . C 3 HOH A 45 1045 1045 HOH TIP . C 3 HOH A 46 1046 1046 HOH TIP . C 3 HOH A 47 1047 1047 HOH TIP . C 3 HOH A 48 1048 1048 HOH TIP . C 3 HOH A 49 1049 1049 HOH TIP . C 3 HOH A 50 1050 1050 HOH TIP . C 3 HOH A 51 1051 1051 HOH TIP . C 3 HOH A 52 1052 1052 HOH TIP . C 3 HOH A 53 1053 1053 HOH TIP . C 3 HOH A 54 1054 1054 HOH TIP . C 3 HOH A 55 1055 1055 HOH TIP . C 3 HOH A 56 1056 1056 HOH TIP . C 3 HOH A 57 1057 1057 HOH TIP . C 3 HOH A 58 1058 1058 HOH TIP . C 3 HOH A 59 1059 1059 HOH TIP . C 3 HOH A 60 1060 1060 HOH TIP . C 3 HOH A 61 1061 1061 HOH TIP . C 3 HOH A 62 1062 1062 HOH TIP . C 3 HOH A 63 1063 1063 HOH TIP . C 3 HOH A 64 1064 1064 HOH TIP . C 3 HOH A 65 1065 1065 HOH TIP . C 3 HOH A 66 1066 1066 HOH TIP . C 3 HOH A 67 1067 1067 HOH TIP . C 3 HOH A 68 1068 1068 HOH TIP . C 3 HOH A 69 1069 1069 HOH TIP . C 3 HOH A 70 1070 1070 HOH TIP . C 3 HOH A 71 1071 1071 HOH TIP . C 3 HOH A 72 1072 1072 HOH TIP . C 3 HOH A 73 1073 1073 HOH TIP . C 3 HOH A 74 1074 1074 HOH TIP . C 3 HOH A 75 1075 1075 HOH TIP . C 3 HOH A 76 1076 1076 HOH TIP . C 3 HOH A 77 1077 1077 HOH TIP . C 3 HOH A 78 1078 1078 HOH TIP . C 3 HOH A 79 1079 1079 HOH TIP . C 3 HOH A 80 1080 1080 HOH TIP . C 3 HOH A 81 1081 1081 HOH TIP . C 3 HOH A 82 1082 1082 HOH TIP . C 3 HOH A 83 1083 1083 HOH TIP . C 3 HOH A 84 1084 1084 HOH TIP . C 3 HOH A 85 1085 1085 HOH TIP . C 3 HOH A 86 1086 1086 HOH TIP . C 3 HOH A 87 1087 1087 HOH TIP . C 3 HOH A 88 1088 1088 HOH TIP . C 3 HOH A 89 1089 1089 HOH TIP . C 3 HOH A 90 1090 1090 HOH TIP . C 3 HOH A 91 1091 1091 HOH TIP . C 3 HOH A 92 1092 1092 HOH TIP . C 3 HOH A 93 1093 1093 HOH TIP . C 3 HOH A 94 1094 1094 HOH TIP . C 3 HOH A 95 1095 1095 HOH TIP . C 3 HOH A 96 1096 1096 HOH TIP . C 3 HOH A 97 1097 1097 HOH TIP . C 3 HOH A 98 1098 1098 HOH TIP . C 3 HOH A 99 1099 1099 HOH TIP . C 3 HOH A 100 1100 1100 HOH TIP . C 3 HOH A 101 1101 1101 HOH TIP . C 3 HOH A 102 1102 1102 HOH TIP . C 3 HOH A 103 1103 1103 HOH TIP . C 3 HOH A 104 1104 1104 HOH TIP . C 3 HOH A 105 1105 1105 HOH TIP . C 3 HOH A 106 1106 1106 HOH TIP . C 3 HOH A 107 1107 1107 HOH TIP . C 3 HOH A 108 1108 1108 HOH TIP . C 3 HOH A 109 1109 1109 HOH TIP . C 3 HOH A 110 1110 1110 HOH TIP . C 3 HOH A 111 1111 1111 HOH TIP . C 3 HOH A 112 1112 1112 HOH TIP . C 3 HOH A 113 1113 1113 HOH TIP . C 3 HOH A 114 1114 1114 HOH TIP . C 3 HOH A 115 1115 1115 HOH TIP . C 3 HOH A 116 1116 1116 HOH TIP . C 3 HOH A 117 1117 1117 HOH TIP . C 3 HOH A 118 1118 1118 HOH TIP . C 3 HOH A 119 1119 1119 HOH TIP . C 3 HOH A 120 1120 1120 HOH TIP . C 3 HOH A 121 1121 1121 HOH TIP . C 3 HOH A 122 1122 1122 HOH TIP . C 3 HOH A 123 1123 1123 HOH TIP . C 3 HOH A 124 1124 1124 HOH TIP . C 3 HOH A 125 1125 1125 HOH TIP . C 3 HOH A 126 1126 1126 HOH TIP . C 3 HOH A 127 1127 1127 HOH TIP . C 3 HOH A 128 1128 1128 HOH TIP . C 3 HOH A 129 1129 1129 HOH TIP . C 3 HOH A 130 1130 1130 HOH TIP . C 3 HOH A 131 1131 1131 HOH TIP . C 3 HOH A 132 1132 1132 HOH TIP . C 3 HOH A 133 1133 1133 HOH TIP . C 3 HOH A 134 1134 1134 HOH TIP . C 3 HOH A 135 1135 1135 HOH TIP . C 3 HOH A 136 1136 1136 HOH TIP . C 3 HOH A 137 1137 1137 HOH TIP . C 3 HOH A 138 1138 1138 HOH TIP . C 3 HOH A 139 1139 1139 HOH TIP . C 3 HOH A 140 1140 1140 HOH TIP . C 3 HOH A 141 1141 1141 HOH TIP . C 3 HOH A 142 1142 1142 HOH TIP . C 3 HOH A 143 1143 1143 HOH TIP . C 3 HOH A 144 1144 1144 HOH TIP . C 3 HOH A 145 1145 1145 HOH TIP . C 3 HOH A 146 1146 1146 HOH TIP . C 3 HOH A 147 1147 1147 HOH TIP . C 3 HOH A 148 1148 1148 HOH TIP . C 3 HOH A 149 1149 1149 HOH TIP . C 3 HOH A 150 1150 1150 HOH TIP . C 3 HOH A 151 1151 1151 HOH TIP . C 3 HOH A 152 1152 1152 HOH TIP . C 3 HOH A 153 1153 1153 HOH TIP . C 3 HOH A 154 1154 1154 HOH TIP . C 3 HOH A 155 1155 1155 HOH TIP . C 3 HOH A 156 1156 1156 HOH TIP . C 3 HOH A 157 1157 1157 HOH TIP . C 3 HOH A 158 1158 1158 HOH TIP . C 3 HOH A 159 1159 1159 HOH TIP . C 3 HOH A 160 1160 1160 HOH TIP . C 3 HOH A 161 1161 1161 HOH TIP . C 3 HOH A 162 1162 1162 HOH TIP . C 3 HOH A 163 1163 1163 HOH TIP . C 3 HOH A 164 1164 1164 HOH TIP . C 3 HOH A 165 1165 1165 HOH TIP . C 3 HOH A 166 1166 1166 HOH TIP . C 3 HOH A 167 1167 1167 HOH TIP . C 3 HOH A 168 1168 1168 HOH TIP . C 3 HOH A 169 1169 1169 HOH TIP . C 3 HOH A 170 1170 1170 HOH TIP . C 3 HOH A 171 1171 1171 HOH TIP . C 3 HOH A 172 1172 1172 HOH TIP . C 3 HOH A 173 1173 1173 HOH TIP . C 3 HOH A 174 1174 1174 HOH TIP . C 3 HOH A 175 1175 1175 HOH TIP . C 3 HOH A 176 1176 1176 HOH TIP . C 3 HOH A 177 1177 1177 HOH TIP . C 3 HOH A 178 1178 1178 HOH TIP . C 3 HOH A 179 1179 1179 HOH TIP . C 3 HOH A 180 1180 1180 HOH TIP . C 3 HOH A 181 1181 1181 HOH TIP . C 3 HOH A 182 1182 1182 HOH TIP . C 3 HOH A 183 1183 1183 HOH TIP . C 3 HOH A 184 1184 1184 HOH TIP . C 3 HOH A 185 1185 1185 HOH TIP . C 3 HOH A 186 1186 1186 HOH TIP . C 3 HOH A 187 1187 1187 HOH TIP . C 3 HOH A 188 1188 1188 HOH TIP . C 3 HOH A 189 1189 1189 HOH TIP . C 3 HOH A 190 1190 1190 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P BMP . . . B 2 39.342 34.747 35.196 1 7.42 ? P BMP 2001 A 1 HETATM 2 O OP1 BMP . . . B 2 40.588 34.847 34.36 1 7.69 ? OP1 BMP 2001 A 1 HETATM 3 O OP2 BMP . . . B 2 38.18 34.487 34.319 1 7.38 ? OP2 BMP 2001 A 1 HETATM 4 O OP3 BMP . . . B 2 39.361 33.569 36.305 1 8.37 ? OP3 BMP 2001 A 1 HETATM 5 O O5' BMP . . . B 2 38.993 36.096 35.978 1 6.66 ? O5' BMP 2001 A 1 HETATM 6 C C5' BMP . . . B 2 39.927 36.743 36.835 1 8.68 ? C5' BMP 2001 A 1 HETATM 7 C C4' BMP . . . B 2 39.249 37.97 37.402 1 5.96 ? C4' BMP 2001 A 1 HETATM 8 O O4' BMP . . . B 2 40.187 38.659 38.238 1 6.73 ? O4' BMP 2001 A 1 HETATM 9 C C3' BMP . . . B 2 38.675 39.007 36.459 1 7.37 ? C3' BMP 2001 A 1 HETATM 10 O O3' BMP . . . B 2 37.509 39.657 36.996 1 7.98 ? O3' BMP 2001 A 1 HETATM 11 C C2' BMP . . . B 2 39.835 39.998 36.338 1 5.51 ? C2' BMP 2001 A 1 HETATM 12 O O2' BMP . . . B 2 39.421 41.332 35.988 1 7.28 ? O2' BMP 2001 A 1 HETATM 13 C C1' BMP . . . B 2 40.514 39.904 37.706 1 6.39 ? C1' BMP 2001 A 1 HETATM 14 N N1 BMP . . . B 2 41.953 40.189 37.841 1 5.57 ? N1 BMP 2001 A 1 HETATM 15 C C2 BMP . . . B 2 42.865 39.491 37.03 1 6.91 ? C2 BMP 2001 A 1 HETATM 16 O O2 BMP . . . B 2 42.472 38.655 36.237 1 7.07 ? O2 BMP 2001 A 1 HETATM 17 N N3 BMP . . . B 2 44.179 39.818 37.213 1 6.4 ? N3 BMP 2001 A 1 HETATM 18 C C4 BMP . . . B 2 44.691 40.754 38.111 1 7.4 ? C4 BMP 2001 A 1 HETATM 19 O O4 BMP . . . B 2 45.896 40.916 38.14 1 8.28 ? O4 BMP 2001 A 1 HETATM 20 C C5 BMP . . . B 2 43.698 41.416 38.913 1 6.94 ? C5 BMP 2001 A 1 HETATM 21 C C6 BMP . . . B 2 42.396 41.141 38.779 1 7.76 ? C6 BMP 2001 A 1 HETATM 22 O O1 BMP . . . B 2 41.515 41.7 39.477 1 7.72 ? O1 BMP 2001 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #