data_1LOS
#
_model_server_result.job_id            k2xgAYSExNMg9312bY6ogg 
_model_server_result.datetime_utc      '2024-11-26 20:05:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1los 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":5004}' 
#
_entry.id    1LOS 
#
_exptl.entry_id    1LOS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              325.169 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "6-AZA URIDINE 5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         82.76 
_cell.angle_beta          89.89 
_cell.angle_gamma         76.91 
_cell.entry_id            1LOS 
_cell.length_a            52.49 
_cell.length_b            56.152 
_cell.length_c            73.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LOS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C8 H12 N3 O9 P' 
_chem_comp.formula_weight    325.169 
_chem_comp.id                UP6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "6-AZA URIDINE 5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     6-AZA-UMP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UP6 sing 330 n y 
N1 N6 UP6 sing 331 n y 
N1 C1' UP6 sing 332 n n 
C2 N3 UP6 sing 333 n y 
C2 O2 UP6 doub 334 n n 
N3 C4 UP6 sing 335 n y 
N3 HN3 UP6 sing 336 n n 
C4 C5 UP6 sing 337 n y 
C4 O4 UP6 doub 338 n n 
C5 N6 UP6 doub 339 n y 
C5 H5 UP6 sing 340 n n 
C1' C2' UP6 sing 341 n n 
C1' O4' UP6 sing 342 n n 
C1' H1' UP6 sing 343 n n 
C2' C3' UP6 sing 344 n n 
C2' O2' UP6 sing 345 n n 
C2' H2' UP6 sing 346 n n 
C3' C4' UP6 sing 347 n n 
C3' O3' UP6 sing 348 n n 
C3' H3' UP6 sing 349 n n 
C4' O4' UP6 sing 350 n n 
C4' C5' UP6 sing 351 n n 
C4' H4' UP6 sing 352 n n 
O2' HO2' UP6 sing 353 n n 
O3' HO3' UP6 sing 354 n n 
C5' O5' UP6 sing 355 n n 
C5' "H5'1" UP6 sing 356 n n 
C5' "H5'2" UP6 sing 357 n n 
O5' P UP6 sing 358 n n 
P O1P UP6 doub 359 n n 
P O2P UP6 sing 360 n n 
P O3P UP6 sing 361 n n 
O2P HOP2 UP6 sing 362 n n 
O3P HOP3 UP6 sing 363 n n 
#
_atom_sites.entry_id                     1LOS 
_atom_sites.fract_transf_matrix[1][1]    0.019051 
_atom_sites.fract_transf_matrix[1][2]    -0.004432 
_atom_sites.fract_transf_matrix[1][3]    0.000538 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018284 
_atom_sites.fract_transf_matrix[2][3]    -0.002377 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UP6 A 1 5001 5001 UP6 AZA . 
F 2 UP6 B 1 5002 5002 UP6 AZA . 
G 2 UP6 C 1 5003 5003 UP6 AZA . 
H 2 UP6 D 1 5004 5004 UP6 AZA . 
I 3 HOH A 1 4001 4001 HOH TIP . 
I 3 HOH A 2 4004 4004 HOH TIP . 
I 3 HOH A 3 4007 4007 HOH TIP . 
I 3 HOH A 4 4010 4010 HOH TIP . 
I 3 HOH A 5 4012 4012 HOH TIP . 
I 3 HOH A 6 4015 4015 HOH TIP . 
I 3 HOH A 7 4016 4016 HOH TIP . 
I 3 HOH A 8 4022 4022 HOH TIP . 
I 3 HOH A 9 4024 4024 HOH TIP . 
I 3 HOH A 10 4026 4026 HOH TIP . 
I 3 HOH A 11 4030 4030 HOH TIP . 
I 3 HOH A 12 4033 4033 HOH TIP . 
I 3 HOH A 13 4036 4036 HOH TIP . 
I 3 HOH A 14 4037 4037 HOH TIP . 
I 3 HOH A 15 4038 4038 HOH TIP . 
I 3 HOH A 16 4040 4040 HOH TIP . 
I 3 HOH A 17 4041 4041 HOH TIP . 
I 3 HOH A 18 4042 4042 HOH TIP . 
I 3 HOH A 19 4049 4049 HOH TIP . 
I 3 HOH A 20 4053 4053 HOH TIP . 
I 3 HOH A 21 4060 4060 HOH TIP . 
I 3 HOH A 22 4062 4062 HOH TIP . 
I 3 HOH A 23 4068 4068 HOH TIP . 
I 3 HOH A 24 4070 4070 HOH TIP . 
I 3 HOH A 25 4073 4073 HOH TIP . 
I 3 HOH A 26 4075 4075 HOH TIP . 
I 3 HOH A 27 4079 4079 HOH TIP . 
I 3 HOH A 28 4080 4080 HOH TIP . 
I 3 HOH A 29 4081 4081 HOH TIP . 
I 3 HOH A 30 4082 4082 HOH TIP . 
I 3 HOH A 31 4083 4083 HOH TIP . 
I 3 HOH A 32 4084 4084 HOH TIP . 
I 3 HOH A 33 4085 4085 HOH TIP . 
I 3 HOH A 34 4087 4087 HOH TIP . 
I 3 HOH A 35 4088 4088 HOH TIP . 
I 3 HOH A 36 4091 4091 HOH TIP . 
I 3 HOH A 37 4092 4092 HOH TIP . 
I 3 HOH A 38 4093 4093 HOH TIP . 
I 3 HOH A 39 4094 4094 HOH TIP . 
I 3 HOH A 40 4095 4095 HOH TIP . 
I 3 HOH A 41 4096 4096 HOH TIP . 
I 3 HOH A 42 4097 4097 HOH TIP . 
I 3 HOH A 43 4098 4098 HOH TIP . 
I 3 HOH A 44 4099 4099 HOH TIP . 
I 3 HOH A 45 4100 4100 HOH TIP . 
I 3 HOH A 46 4101 4101 HOH TIP . 
I 3 HOH A 47 4102 4102 HOH TIP . 
I 3 HOH A 48 4104 4104 HOH TIP . 
I 3 HOH A 49 4105 4105 HOH TIP . 
I 3 HOH A 50 4108 4108 HOH TIP . 
I 3 HOH A 51 4109 4109 HOH TIP . 
I 3 HOH A 52 4111 4111 HOH TIP . 
I 3 HOH A 53 4113 4113 HOH TIP . 
I 3 HOH A 54 4115 4115 HOH TIP . 
I 3 HOH A 55 4116 4116 HOH TIP . 
I 3 HOH A 56 4117 4117 HOH TIP . 
I 3 HOH A 57 4118 4118 HOH TIP . 
I 3 HOH A 58 4119 4119 HOH TIP . 
I 3 HOH A 59 4120 4120 HOH TIP . 
I 3 HOH A 60 4121 4121 HOH TIP . 
I 3 HOH A 61 4122 4122 HOH TIP . 
I 3 HOH A 62 4123 4123 HOH TIP . 
I 3 HOH A 63 4124 4124 HOH TIP . 
I 3 HOH A 64 4126 4126 HOH TIP . 
I 3 HOH A 65 4127 4127 HOH TIP . 
I 3 HOH A 66 4128 4128 HOH TIP . 
I 3 HOH A 67 4129 4129 HOH TIP . 
I 3 HOH A 68 4130 4130 HOH TIP . 
I 3 HOH A 69 4131 4131 HOH TIP . 
I 3 HOH A 70 4132 4132 HOH TIP . 
I 3 HOH A 71 4133 4133 HOH TIP . 
I 3 HOH A 72 4134 4134 HOH TIP . 
I 3 HOH A 73 4135 4135 HOH TIP . 
I 3 HOH A 74 4136 4136 HOH TIP . 
I 3 HOH A 75 4137 4137 HOH TIP . 
I 3 HOH A 76 4138 4138 HOH TIP . 
I 3 HOH A 77 4139 4139 HOH TIP . 
I 3 HOH A 78 4140 4140 HOH TIP . 
I 3 HOH A 79 4141 4141 HOH TIP . 
I 3 HOH A 80 4142 4142 HOH TIP . 
I 3 HOH A 81 4143 4143 HOH TIP . 
I 3 HOH A 82 4149 4149 HOH TIP . 
I 3 HOH A 83 4196 4196 HOH TIP . 
I 3 HOH A 84 4197 4197 HOH TIP . 
I 3 HOH A 85 4199 4199 HOH TIP . 
I 3 HOH A 86 4206 4206 HOH TIP . 
J 3 HOH B 1 4002 4002 HOH TIP . 
J 3 HOH B 2 4005 4005 HOH TIP . 
J 3 HOH B 3 4006 4006 HOH TIP . 
J 3 HOH B 4 4008 4008 HOH TIP . 
J 3 HOH B 5 4011 4011 HOH TIP . 
J 3 HOH B 6 4017 4017 HOH TIP . 
J 3 HOH B 7 4020 4020 HOH TIP . 
J 3 HOH B 8 4021 4021 HOH TIP . 
J 3 HOH B 9 4027 4027 HOH TIP . 
J 3 HOH B 10 4032 4032 HOH TIP . 
J 3 HOH B 11 4035 4035 HOH TIP . 
J 3 HOH B 12 4052 4052 HOH TIP . 
J 3 HOH B 13 4055 4055 HOH TIP . 
J 3 HOH B 14 4057 4057 HOH TIP . 
J 3 HOH B 15 4058 4058 HOH TIP . 
J 3 HOH B 16 4061 4061 HOH TIP . 
J 3 HOH B 17 4064 4064 HOH TIP . 
J 3 HOH B 18 4069 4069 HOH TIP . 
J 3 HOH B 19 4072 4072 HOH TIP . 
J 3 HOH B 20 4076 4076 HOH TIP . 
J 3 HOH B 21 4077 4077 HOH TIP . 
J 3 HOH B 22 4078 4078 HOH TIP . 
J 3 HOH B 23 4086 4086 HOH TIP . 
J 3 HOH B 24 4089 4089 HOH TIP . 
J 3 HOH B 25 4090 4090 HOH TIP . 
J 3 HOH B 26 4103 4103 HOH TIP . 
J 3 HOH B 27 4106 4106 HOH TIP . 
J 3 HOH B 28 4107 4107 HOH TIP . 
J 3 HOH B 29 4110 4110 HOH TIP . 
J 3 HOH B 30 4112 4112 HOH TIP . 
J 3 HOH B 31 4144 4144 HOH TIP . 
J 3 HOH B 32 4145 4145 HOH TIP . 
J 3 HOH B 33 4146 4146 HOH TIP . 
J 3 HOH B 34 4147 4147 HOH TIP . 
J 3 HOH B 35 4148 4148 HOH TIP . 
J 3 HOH B 36 4150 4150 HOH TIP . 
J 3 HOH B 37 4151 4151 HOH TIP . 
J 3 HOH B 38 4152 4152 HOH TIP . 
J 3 HOH B 39 4153 4153 HOH TIP . 
J 3 HOH B 40 4198 4198 HOH TIP . 
J 3 HOH B 41 4200 4200 HOH TIP . 
J 3 HOH B 42 4201 4201 HOH TIP . 
J 3 HOH B 43 4202 4202 HOH TIP . 
J 3 HOH B 44 4203 4203 HOH TIP . 
J 3 HOH B 45 4204 4204 HOH TIP . 
K 3 HOH C 1 4013 4013 HOH TIP . 
K 3 HOH C 2 4019 4019 HOH TIP . 
K 3 HOH C 3 4029 4029 HOH TIP . 
K 3 HOH C 4 4031 4031 HOH TIP . 
K 3 HOH C 5 4045 4045 HOH TIP . 
K 3 HOH C 6 4048 4048 HOH TIP . 
K 3 HOH C 7 4063 4063 HOH TIP . 
K 3 HOH C 8 4066 4066 HOH TIP . 
K 3 HOH C 9 4067 4067 HOH TIP . 
K 3 HOH C 10 4071 4071 HOH TIP . 
K 3 HOH C 11 4114 4114 HOH TIP . 
K 3 HOH C 12 4125 4125 HOH TIP . 
K 3 HOH C 13 4154 4154 HOH TIP . 
K 3 HOH C 14 4156 4156 HOH TIP . 
K 3 HOH C 15 4157 4157 HOH TIP . 
K 3 HOH C 16 4158 4158 HOH TIP . 
K 3 HOH C 17 4159 4159 HOH TIP . 
K 3 HOH C 18 4160 4160 HOH TIP . 
K 3 HOH C 19 4162 4162 HOH TIP . 
K 3 HOH C 20 4163 4163 HOH TIP . 
K 3 HOH C 21 4164 4164 HOH TIP . 
K 3 HOH C 22 4165 4165 HOH TIP . 
K 3 HOH C 23 4166 4166 HOH TIP . 
K 3 HOH C 24 4167 4167 HOH TIP . 
K 3 HOH C 25 4168 4168 HOH TIP . 
K 3 HOH C 26 4169 4169 HOH TIP . 
K 3 HOH C 27 4171 4171 HOH TIP . 
K 3 HOH C 28 4194 4194 HOH TIP . 
L 3 HOH D 1 4003 4003 HOH TIP . 
L 3 HOH D 2 4009 4009 HOH TIP . 
L 3 HOH D 3 4014 4014 HOH TIP . 
L 3 HOH D 4 4018 4018 HOH TIP . 
L 3 HOH D 5 4023 4023 HOH TIP . 
L 3 HOH D 6 4025 4025 HOH TIP . 
L 3 HOH D 7 4028 4028 HOH TIP . 
L 3 HOH D 8 4034 4034 HOH TIP . 
L 3 HOH D 9 4039 4039 HOH TIP . 
L 3 HOH D 10 4043 4043 HOH TIP . 
L 3 HOH D 11 4044 4044 HOH TIP . 
L 3 HOH D 12 4046 4046 HOH TIP . 
L 3 HOH D 13 4047 4047 HOH TIP . 
L 3 HOH D 14 4050 4050 HOH TIP . 
L 3 HOH D 15 4051 4051 HOH TIP . 
L 3 HOH D 16 4054 4054 HOH TIP . 
L 3 HOH D 17 4056 4056 HOH TIP . 
L 3 HOH D 18 4059 4059 HOH TIP . 
L 3 HOH D 19 4065 4065 HOH TIP . 
L 3 HOH D 20 4074 4074 HOH TIP . 
L 3 HOH D 21 4155 4155 HOH TIP . 
L 3 HOH D 22 4161 4161 HOH TIP . 
L 3 HOH D 23 4170 4170 HOH TIP . 
L 3 HOH D 24 4172 4172 HOH TIP . 
L 3 HOH D 25 4173 4173 HOH TIP . 
L 3 HOH D 26 4174 4174 HOH TIP . 
L 3 HOH D 27 4175 4175 HOH TIP . 
L 3 HOH D 28 4176 4176 HOH TIP . 
L 3 HOH D 29 4177 4177 HOH TIP . 
L 3 HOH D 30 4178 4178 HOH TIP . 
L 3 HOH D 31 4179 4179 HOH TIP . 
L 3 HOH D 32 4180 4180 HOH TIP . 
L 3 HOH D 33 4181 4181 HOH TIP . 
L 3 HOH D 34 4182 4182 HOH TIP . 
L 3 HOH D 35 4183 4183 HOH TIP . 
L 3 HOH D 36 4184 4184 HOH TIP . 
L 3 HOH D 37 4185 4185 HOH TIP . 
L 3 HOH D 38 4186 4186 HOH TIP . 
L 3 HOH D 39 4187 4187 HOH TIP . 
L 3 HOH D 40 4188 4188 HOH TIP . 
L 3 HOH D 41 4189 4189 HOH TIP . 
L 3 HOH D 42 4190 4190 HOH TIP . 
L 3 HOH D 43 4191 4191 HOH TIP . 
L 3 HOH D 44 4192 4192 HOH TIP . 
L 3 HOH D 45 4193 4193 HOH TIP . 
L 3 HOH D 46 4195 4195 HOH TIP . 
L 3 HOH D 47 4205 4205 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UP6 . . . H 2 63.546 44.629 62.939 1 31.55 ? N1 UP6 5004 D 1 
HETATM 2 C C2 UP6 . . . H 2 64.748 44.392 62.236 1 32.1 ? C2 UP6 5004 D 1 
HETATM 3 N N3 UP6 . . . H 2 65.674 45.423 62.303 1 30.23 ? N3 UP6 5004 D 1 
HETATM 4 C C4 UP6 . . . H 2 65.521 46.648 62.987 1 33.05 ? C4 UP6 5004 D 1 
HETATM 5 C C5 UP6 . . . H 2 64.269 46.792 63.664 1 36.43 ? C5 UP6 5004 D 1 
HETATM 6 N N6 UP6 . . . H 2 63.365 45.821 63.62 1 32.61 ? N6 UP6 5004 D 1 
HETATM 7 O O2 UP6 . . . H 2 64.918 43.353 61.635 1 33.58 ? O2 UP6 5004 D 1 
HETATM 8 O O4 UP6 . . . H 2 66.419 47.448 62.954 1 39.85 ? O4 UP6 5004 D 1 
HETATM 9 C C1' UP6 . . . H 2 62.477 43.633 62.977 1 31.4 ? C1' UP6 5004 D 1 
HETATM 10 C C2' UP6 . . . H 2 61.818 43.102 61.695 1 33.1 ? C2' UP6 5004 D 1 
HETATM 11 C C3' UP6 . . . H 2 61.308 41.717 62.106 1 31.18 ? C3' UP6 5004 D 1 
HETATM 12 C C4' UP6 . . . H 2 62.365 41.298 63.128 1 31.59 ? C4' UP6 5004 D 1 
HETATM 13 O O2' UP6 . . . H 2 60.792 43.962 61.148 1 32.99 ? O2' UP6 5004 D 1 
HETATM 14 O O3' UP6 . . . H 2 59.947 41.763 62.609 1 33.22 ? O3' UP6 5004 D 1 
HETATM 15 O O4' UP6 . . . H 2 62.841 42.508 63.749 1 30.49 ? O4' UP6 5004 D 1 
HETATM 16 C C5' UP6 . . . H 2 63.575 40.533 62.601 1 29.38 ? C5' UP6 5004 D 1 
HETATM 17 O O5' UP6 . . . H 2 63.109 39.353 61.919 1 34.56 ? O5' UP6 5004 D 1 
HETATM 18 P P UP6 . . . H 2 64.067 38.375 61.061 1 36.23 ? P UP6 5004 D 1 
HETATM 19 O O1P UP6 . . . H 2 64.826 38.98 59.929 1 36.93 ? O1P UP6 5004 D 1 
HETATM 20 O O2P UP6 . . . H 2 63.212 37.3 60.475 1 36.6 ? O2P UP6 5004 D 1 
HETATM 21 O O3P UP6 . . . H 2 64.956 37.626 62.226 1 33.54 ? O3P UP6 5004 D 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           1295 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           21 
#